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1 stalled forks from degradation by the MRE11 nuclease.
2 methyltransferase, EZH2 is not known to be a nuclease.
3 gulate the activities of XPB ATPase and Bax1 nuclease.
4 ounding a constitutive, potentially harmful, nuclease.
5 SB) formation, in this case by the SLX4/SLX1 nuclease.
6 by a long-range step involving EXO1 or DNA2 nuclease.
7 roduced by RNase 1, a highly active secreted nuclease.
8 ingle-stranded DNA created by Mre11 and CtIP nucleases.
9 eaks (DSBs) after genome editing with CRISPR nucleases.
10 e and the degradation activity of endogenous nucleases.
11 eukaryotic cells possess multiple resection nucleases.
12 ded in open chromatin that are accessible to nucleases.
13 avage outcomes across engineered and natural nucleases.
14 adenylate (cA4) and deactivate the ancillary nucleases.
15 o limit Csm6 activity in the absence of ring nucleases.
16 oolset of RNA-programmable CRISPR-associated nucleases.
17 may be shared by other 5' structure-specific nucleases.
18 ions of divalent cations and the presence of nucleases.
19 d quantity of circulating tumor cell-derived nucleases.
20 res that could afford protection from plasma nucleases.
21 ge sites and coordinating damage incision by nucleases.
24 tivity and light-induced SMALL RNA DEGRADING NUCLEASE 1 shortens the half-life of several miRNAs in d
27 A2 nuclease/helicase is a structure-specific nuclease, 5'-to-3' helicase, and DNA-dependent ATPase.
28 at employs coexpression of CRISPR-associated nucleases 9 and 12a (Cas9 and Cas12a) and machine-learni
29 tion of the mitochondrial genome by designer nucleases(9,10).Here we describe an interbacterial toxin
34 question of how and when Mus81-Mms4 and Yen1 nucleases act on DNA replication or recombination struct
35 e potential for clinical implementation of a nuclease-activatable fluorescent probe for early diagnos
37 ems, where they likely function as accessory nucleases activated by cyclic oligoadenylate second mess
40 et preserves the spatial organization of the nuclease active site, arguing that OLD proteins use a co
41 HEPN nuclease motifs create Las1's composite nuclease active site, but the roles of the individual HE
45 i hosts, indicating that both the ATPase and nuclease activities are required for OLD function in viv
52 L in vitro We noted that stimulation of Pso2 nuclease activity is specific to eukaryotic RecQ4 subfam
55 investigated each variant's effect on the 5' nuclease activity of PLD3, finding that some variants le
56 e structure to license a metal-dependent DNA nuclease activity specific for nicking of supercoiled DN
57 ISPR enzymes are RNA-targeting proteins with nuclease activity that enable specific and robust target
58 antly, Hrq1 also stimulated Pso2 translesion nuclease activity through a site-specific ICL in vitro W
59 e DNA repair function of EXO5 due to loss of nuclease activity, as well as failure of nuclear localiz
61 leading genome editing technologies rely on nuclease activity, including nick generation, at specifi
68 gnal transduction within the CRISPR-Cas9 HNH nuclease, advancing our understanding of the allosteric
69 that measures DNA accessibility to exogenous nucleases after exposure to beta-lactams (termed nucleas
70 esulted in PAM profiles distinct from either nuclease, allowing more flexible editing in human cells.
72 side-chain methyl groups of the 64-kDa Mre11 nuclease and capping domains, which allowed us to descri
73 NA aptamers remain active in the presence of nuclease and exhibit markedly higher thermal stability t
74 he presence of Cas3, which contains both the nuclease and helicase activities required for DNA cleava
76 rom the region interfacing the adjacent RuvC nuclease and propagates up to the DNA recognition lobe i
77 s the Cas9 (CRISPR Associated protein 9) DNA nuclease and single guide RNA components, and difference
78 ents, but rather are induced from cell death nucleases and are not fundamental to the mechanism of ac
80 biochemical properties of DNA2-like helicase-nucleases and DNA looping motor proteins in general.
82 ope of biotechnological applications of Cas9 nucleases and may be particularly advantageous for genom
83 protected against detrimental activities of nucleases and of the DNA damage response machinery and p
84 be instrumental in understanding better both nucleases and their incompletely understood roles in vit
85 ses, transcriptional activator-like effector nucleases and, most recently, clustered regulatory inter
86 ants such as exoenzymes (proteases, lipases, nucleases) and downregulate the expression of surface bi
87 y mutagenic because it uses DNA polymerases, nucleases, and other enzymes that modify incompatible DN
88 ruses and bacteriophage encode a potent ring nuclease anti-CRISPR, AcrIII-1, to rapidly degrade cA4 a
90 ctivities of enterobacterial RecBCD helicase-nuclease are coordinated by Chi recombination hotspots (
94 on components of MGEs, such as site-specific nucleases, are 'guns for hire' that can also function as
97 single-molecule FRET (smFRET)- and gel-based nuclease assays, we show that Hrq1 stimulates the Pso2 n
98 ort half-lives of such labile ligands due to nuclease attack and limited cellular uptake due to their
99 ll termini of the components are hidden from nuclease attack, whereas the target-binding sites are ex
100 of CRISPR-Cas-derived genome editing agents-nucleases, base editors, transposases/recombinases and p
101 Here we describe a PIK3CA mutation specific nuclease-based enrichment assay, which combined with a l
102 h ULI-NChIP-seq (ultra-low-input micrococcal nuclease-based native ChIP-seq) shows that EZH1 could pa
103 time, recent demonstrations of programmable nuclease-based technology suggest that clinical manipula
104 om Sulfurisphaera tokodaii (St) bound to the nuclease Bax1 and their complex with a bubble DNA having
108 nate the genome-wide activity of CRISPR-Cas9 nucleases, but are not easily scalable to the throughput
109 ritance of the X-chromosome-shredding I-PpoI nuclease by coupling this to a CRISPR-based gene drive i
110 her, our findings show that miniature Cas12f nucleases can protect against invading dsDNA like much l
112 onsive materials using the CRISPR-associated nuclease Cas12a as a user-programmable sensor and materi
114 cleoprotein complex Cascade and the helicase-nuclease Cas3(4,5), but nuclease-deficient type I system
117 ers, protein nanocages, and the gene-editing nuclease Cas9, with up to 5-fold higher expression level
119 the catalytic machinery controlling Class 2 nuclease cleavage, degenerate conservation of the C-term
123 from the 5' end enables the application of a nuclease competent Cas9 protein for transcriptional modu
124 ently recruited by gRNA aptamer binding to a nuclease competent CRISPR complex containing truncated g
128 ubsequently, we identified the cellular ring nuclease Crn1, which slowly degrades cA(4) to reset the
130 At Chi hotspots (5' GCTGGTGG 3'), RecB's nuclease cuts the 3'-ended strand and loads RecA strand-
132 prehensive map of the energetic landscape of nuclease-dead Cas12a (dCas12a) from Francisella novicida
133 deno-associated virus (AAV) vectors encoding nuclease-dead Cas9 and a single-guide RNA targeting CUG
134 n the less severe resection defects of MRE11 nuclease-deficient cells compared to those lacking CtIP.
135 ctasia-like disorder (ATLD) fibroblasts with nuclease-deficient MRE11A (p.W210C) tended to show slowe
136 ade and the helicase-nuclease Cas3(4,5), but nuclease-deficient type I systems lacking Cas3 have been
138 emonstrated by reversible protection against nuclease degradation and trapping transient RNA complexe
139 regions of heterochromatin via resistance to nuclease degradation followed by next-generation sequenc
146 ques, including DNase-seq, which is based on nuclease DNase I, and ATAC-seq, which is based on transp
147 n of two regions of the Cas10 protein: an HD nuclease domain (which degrades viral DNA)(1,2) and a cy
148 in architecture consisting of a Cas3-like HD nuclease domain fused to a degenerate polymerase fold an
149 stems, however, the histidine-aspartate (HD) nuclease domain is encoded as part of a Cas10-like large
150 Interestingly, the DNA is kept away from the nuclease domain of Bax1, potentially preventing DNA inci
151 cture of the CTD indicates it is a vestigial nuclease domain that likely evolved from conserved nucle
154 opening and coordinating damage incision by nucleases during NER, but the underlying mechanisms rema
156 of human HSPCs as a feasible alternative to nuclease editing for HSC-targeted therapeutic genome mod
157 ng the G551D variant obtained by zinc finger nuclease editing of a human complementary DNA superexon,
159 nfortunately, currently available small Cas9 nucleases either display low activity or require a long
161 ure shields phage DNA from CRISPR-associated nucleases encompassing Cascade-Cas3, Cas9, and Cas12.
162 nally, the MutLgamma-MutSgamma-EXO1-RFC-PCNA nuclease ensemble preferentially cleaves DNA with Hollid
163 igen (PCNA) are additional components of the nuclease ensemble, thereby triggering crossing-over.
164 e archaeal species encode a specialised ring nuclease enzyme (Crn1) to degrade cyclic tetra-adenylate
166 tion with AGO typically protects miRNAs from nucleases, extensive pairing to some unusual target RNAs
169 indings suggest that high affinity of a Cas9 nuclease for its cognate PAM promotes higher genome-edit
172 nalyse the activity of a bacterial Argonaute nuclease from Clostridium butyricum (CbAgo) in vivo.
174 the full-length structure of the Class 1 OLD nuclease from Thermus scotoductus (Ts) at 2.20 angstrom
175 To this end, we measured affinities of Cas9 nucleases from Streptococcus pyogenes, Staphylococcus au
177 es of the Las1 HEPN motif were important for nuclease function, revealing that both HEPN motifs parti
183 cularization for high-throughput analysis of nuclease genome-wide effects by sequencing' (CHANGE-seq)
185 NA cleavage sites and end trimming varied by nuclease, guide RNA and the positions of mispaired nucle
186 ay that depends on the MLH1-MLH3 (MutLgamma) nuclease has been implicated in the biased processing of
188 ne systems in prokaryotes whose RNA-directed nucleases have been co-opted for various technologies.
190 In recent years, CRISPR-associated (Cas) nucleases have revolutionized the genome editing field.
191 function at an ICL protects against DNA2-WRN nuclease-helicase complex and not the MRE11 nuclease tha
195 eful in exploring the activity of engineered nucleases in genome editing and other biotechnological a
196 Finally, P-AscH(-) decreased CTC-derived nucleases in subjects with stage IV PDAC in a phase I cl
197 tion CRISPR/Cas9 activation systems based on nuclease inactive dead (d)Cas9 fused to transcriptional
198 unhooking of the tethered strands by either nuclease incision of the DNA backbone or glycosylase cle
200 iments on serum samples and experiments with nuclease indicated the contribution of encapsidated doub
201 res provide a platform to understand the XPB-nuclease interactions important for the coordination of
204 of genomic sequences using paired CRISPR-Cas nucleases is a powerful tool to study gene function, cre
205 off-target cleavage profile of programmable nucleases is an important consideration for any genome e
207 ats are susceptible to cleavage by the MUS81 nuclease, leading to massive chromosome shattering.
216 utics show improved metabolic stability from nuclease-mediated degradation and exhibit enhanced inter
217 cellular genes counters the well-known viral-nuclease-mediated host shutoff and (ii) subsequent trans
218 counter to the well-known mechanism of viral-nuclease-mediated host shutoff that is activated downstr
220 tial sensitivity of chromatin to micrococcal nuclease (MNase) digestion, we profile accessible chroma
222 RNA cleavage pathways and share a short HEPN nuclease motif (RphiXXXH) important for RNA cleavage.
223 and in vitro assays, we show that both HEPN nuclease motifs are required for Las1 nuclease activity
226 ndrial DNA due to the lack of the DNA repair nuclease MRE11A and inefficient lysosomal tethering of A
230 phage PhiKZ segregates its DNA from immunity nucleases of its host, Pseudomonas aeruginosa, by constr
231 ally, this signaling pathway includes a ring nuclease, often also a CARF domain (either the sensor it
232 ndirect cleavage by recruiting an endogenous nuclease, or a ribonuclease targeting chimera (RIBOTAC).
240 isingly, dose-dependent activity against the nuclease reporter (nuc), which is under the control of t
244 arly steps of ICL repair to prevent aberrant nuclease resection, the role of BRCA2 in this process ha
247 monstrates high affinity to RNA, exceptional nuclease resistance, efficient recruitment of RNase H, a
248 echnique that allows rapid identification of nuclease resistant chromatin, which correlate with heter
249 3'-extension by nick-translation to produce nuclease-resistant oligonucleotides and 3'-terminal tran
250 by the secreted S. aureus enzyme micrococcal nuclease results in emission of a readily detectable flu
251 1), CRISPR/Cas-derived RNA-guided engineered nuclease (RGEN), high resolution melt curve analysis (HR
252 e for flagellin and type I pili, but not the nuclease, S-layer protein, or serratamolide biosurfactan
254 ters display increased H3K27 acetylation and nuclease sensitivity and coordinate induction of TNF, LT
255 ficant energetic stabilization and decreased nuclease sensitivity as unimolecular hairpin structures
259 we evaluate the thermodynamic stability and nuclease sensitivity of oligonucleotides composed of the
260 s protocol describes single-cell micrococcal nuclease sequencing (scMNase-seq), a method for detectin
261 l-established biochemical theme, but how one nuclease site cleaves both DNA strands of a double helix
262 of genetic mutations, usually using targeted nucleases such as CRISPR/Cas9, and suppression of gene e
264 ne editing have been enabled by programmable nucleases such as transcription activator-like effector
265 editing technology is an emerging RNA-guided nuclease system initially identified from the microbial
267 In particular, advances in sequence-specific nuclease technologies have dramatically accelerated the
268 s is requisite for activation of the Artemis nuclease that associates with DNA-PK to mediate hairpin
269 so it is highly likely that cells require a nuclease that can process remaining unresolved and hemi-
270 ody, and we show here that human ANKLE1 is a nuclease that cleaves a range of branched DNA species.
271 nuclease-helicase complex and not the MRE11 nuclease that is implicated in the resection of HU-induc
272 ifferentiation of PC12 cells by inhibiting a nuclease that promotes RNA-induced silencing (C3PO).
273 y described as an RNA deadenylase, is a ring nuclease that rapidly degrades cyclic tetra-adenylate (c
274 detecting foreign RNA, activating ancillary nucleases that can be toxic to cells, necessitating mech
275 nd messenger to signal infection, activating nucleases that degrade the nucleic acid of both invader
276 proteins (Acrs) to inactivate the RNA-guided nucleases that enforce CRISPR-Cas adaptive immunity in t
277 compact (422-603 amino acids) CRISPR-Cas12f nucleases that recognize and cleave dsDNA in a PAM depen
279 ssays, we show that Hrq1 stimulates the Pso2 nuclease through a mechanism that requires Hrq1 catalyti
280 ages evade a broad spectrum of DNA-targeting nucleases through the assembly of a protein barrier arou
281 s showed that the HpSGN system required less nuclease to cleave ssDNA substrates than the SGN system
287 th meganucleases and followed by zinc finger nucleases, transcriptional activator-like effector nucle
288 om Streptococcus pyogenes was the first Cas9 nuclease used for genome editing and it remains the most
289 and Cas9 bacterial CRISPR RNA (crRNA)-guided nucleases used widely for genome editing and DNA detecti
291 inactivating virions, as well as endogenous nucleases, was optimized to increase sensitivity and sam
293 3-19K lumenal domain activates the IRE1alpha nuclease, which initiates mRNA splicing of X-box binding
294 tly repaired by a pathway involving the Pso2 nuclease, which is hypothesized to use its exonuclease a
296 endonuclease 1 (FEN1), a structure-specific nuclease with roles in DNA replication and repair, and h
299 s that results from its cleavage by targeted nucleases, with broad implications for the study and pot