ライフサイエンスコーパス: oligonucleotide array

1 -specific cDNA microarray and a whole genome oligonucleotide array.

2 man, mouse and rats, by using a high-density oligonucleotide array.

3 g a high-density, exon-focused, whole-genome oligonucleotide array.

4 One of the most popular formats is oligonucleotide array.

5 over 10,000 SNPs per individual on a single oligonucleotide array.

6 detection by hybridization to a high-density oligonucleotide array.

7 nucleotide resolution by hybridization to an oligonucleotide array.

8 enomic DNA and allowed to hybridize with the oligonucleotide array.

9 ool by using hybridization to a high-density oligonucleotide array.

10 nd hybridizing the mixture to a high-density oligonucleotide array.

11 eveloped and used for the design of a custom oligonucleotide array.

12 hybridization to a new type of high-density oligonucleotide array.

13 analysis was performed using a high-density oligonucleotide array.

14 rigin were investigated by use of a designed oligonucleotide array.

15 chieved by hybridization to high-density DNA oligonucleotide arrays.

16 acytidine and comparing gene expression with oligonucleotide arrays.

17 s at the mRNA level were also confirmed with oligonucleotide arrays.

18 sensitivity and specificity for high-density oligonucleotide arrays.

19 intradermal infection model using Affymetrix oligonucleotide arrays.

20 er of synthesis cycles required to construct oligonucleotide arrays.

21 ntrol cells were assessed using high-density oligonucleotide arrays.

22 f Dex-treated MM cells were determined using oligonucleotide arrays.

23 ly assessed by hybridization to high-density oligonucleotide arrays.

24 r assessing changes in gene expression using oligonucleotide arrays.

25 values associated with gene expression from oligonucleotide arrays.

26 e accurate than those obtained by commercial oligonucleotide arrays.

27 of non-tumor-bearing mice using high-density oligonucleotide arrays.

28 provide a more efficient strategy to produce oligonucleotide arrays.

29 ccording to an error model characteristic of oligonucleotide arrays.

30 fers that contain 49 individual high-density oligonucleotide arrays.

31 of young and aged mice by using high-density oligonucleotide arrays.

32 useful when applying double-stranded DNA on oligonucleotide arrays.

33 muscle (EOM), in adult mice by high-density oligonucleotide arrays.

34 uence-tagged sites (STSs) using high-density oligonucleotide arrays.

35 expression of all genes can be monitored by oligonucleotide arrays.

36 ysed for drug sensitivity using high-density oligonucleotide arrays.

37 r array datasets generated on either cDNA or oligonucleotide arrays.

38 ains of yeast was hybridized to high-density oligonucleotide arrays.

39 lled oligonucleotides were used as probes to oligonucleotide arrays.

40 shed by direct hybridization to high-density oligonucleotide arrays.

41 hybridization and ligation on complete n-mer oligonucleotide arrays.

42 e expression data obtained with high-density oligonucleotide arrays.

43 AC arrays or to around 2 kb resolution using oligonucleotide arrays.

44 ges were isolated and profiled on Affymetrix oligonucleotide arrays.

45 iver tissues were studied using high-density oligonucleotide arrays.

46 eins is often more challenging than creating oligonucleotide arrays.

47 ray analysis and mRNA expression analysis by oligonucleotide arrays.

48 ide and hybridized them against high-density oligonucleotide arrays.

49 or simultaneously scoring 116,204 SNPs using oligonucleotide arrays.

50 xpression analyses performed with commercial oligonucleotide arrays.

51 ied gene expression patterns by high-density oligonucleotide arrays (8,800 genes studied) at 30 minut

52 Using oligonucleotide arrays, a number of EGR1-regulated genes

53 Using oligonucleotide arrays, a number of Rb2/p130 downregulat

54 nes at the mRNA level by using both cDNA and oligonucleotide arrays, a striking regularity appeared:

55 lls was studied with the GeneChip Rat Genome oligonucleotide array (Affymetrix, Santa Clara, CA).

56 rd/rd and wild type (wt) mouse retina (U74A oligonucleotide arrays (Affymetrix)) over the known time

57 nd multihematopoietic lineages, we performed oligonucleotide array analyses targeting for prospective

58 Oligonucleotide array analysis identified genes encoding

59 Morphological characterization and oligonucleotide array analysis of gene expression demons

60 ngase (LCE) that was identified initially by oligonucleotide array analysis of mRNA from SREBP transg

61 We have performed oligonucleotide array analysis on various murine lung ti

62 Oligonucleotide array analysis revealed 284 genes that w

63 oth representational difference analysis and oligonucleotide array analysis with RNA derived from a C

64 Gene expression profiling was performed by oligonucleotide array analysis.

65 velopment in Arabidopsis was conducted using oligonucleotide array analysis.

66 Here we used a 16,000-feature oligonucleotide array and real-time quantitative RT-PCR

67 were generated using the U133av2 Affymetrix oligonucleotide array and validated using real-time reve

68 published values determined by high-density oligonucleotide array and/or microarray analysis for snf

69 rom each point was analyzed using Affymetrix oligonucleotide arrays and a first order decay model was

70 w candidate genes, but reliable high-density oligonucleotide arrays and other novel techniques will a

71 red in rich or minimal media was analyzed by oligonucleotide arrays and quantitative multidimensional

72 and in primary AML blasts using cDNA arrays, oligonucleotide arrays and real-time reverse transcripti

73 We utilized oligonucleotide arrays and RNA isolated from stable Pax3

74 expression changes detected with Affymetrix oligonucleotide arrays and software.

75 p sequence-tagged lines, inexpensive spotted oligonucleotide arrays, and a near-complete whole genome

76 iments were performed using macaque-specific oligonucleotide arrays, and high-throughput proteomics r

77 lifications and deletions using high-density oligonucleotide arrays, and performed gene expression an

78 adArrays are far behind those for Affymetrix oligonucleotide arrays, and so need to be improved.

79 Using oligonucleotide arrays, APP was by far the most overexpr

80 Oligonucleotide arrays are a powerful technology for mea

81 High-density oligonucleotide arrays are a powerful tool for uncoverin

82 ly evaluate their impact when short-sequence oligonucleotide arrays are applied (Affymetrix Genome-Wi

83 While oligonucleotide arrays are now routinely used to profile

84 Oligonucleotide arrays are powerful tools to study chang

85 Despite the success and popularity of oligonucleotide arrays as a high-throughput technique fo

86 Here we describe the utility of high-density oligonucleotide arrays as a rapid approach for comparing

87 , kRT-PCR, cDNA microarray, and high density oligonucleotide array assays are compared for their abil

88 rom a variety of array technologies, such as oligonucleotide array, bacterial artificial chromosome a

89 of all three families by use of a custom 10q oligonucleotide array-based comparative genomic hybridiz

90 primary neuroblastoma specimens analyzed by oligonucleotide array-based expression analysis, and the

91 ponsible for these divergent effects, we did oligonucleotide array-based gene expression profiling an

92 ble-stranding a commercially synthesized DNA oligonucleotide array, binding a TF directly to the doub

93 Here, we demonstrate that custom oligonucleotide arrays can be efficiently used for the p

94 th flexible sample preparation, high-density oligonucleotide arrays can be tailored for even larger s

95 lished, however, whether SNP detection using oligonucleotide arrays can be used to accelerate the map

96 High-density oligonucleotide arrays can be used to rapidly examine la

97 Oligonucleotide arrays can provide a broad picture of th

98 ere identified by more than one method (U133 oligonucleotide arrays, cDNA arrays or serial analysis o

99 using three different microarray platforms, oligonucleotide arrays, cDNA arrays printed on glass sli

100 gin using a custom designed 4-Mb tiling-path oligonucleotide array CGH assay.

101 compared to CNV assessment obtained using an oligonucleotide array CGH platform designed to query CNV

102 By using whole-genome oligonucleotide array CGH, we have identified deletions

103 We used a custom oligonucleotide array comparative genomic hybridization

104 ed use of microarray technologies, including oligonucleotide array comparative genomic hybridization

105 Oligonucleotide array comparative genomic hybridization

106 We have applied whole-genome oligonucleotide array comparative genomic hybridization

107 the 17p13.3 CNVs by performing high-density oligonucleotide array comparative genomic hybridization,

108 ssue samples was analyzed with an Affymetrix oligonucleotide array complementary to more than 6,500 h

109 We used Affymetrix oligonucleotide arrays comprising approximately 12 000 k

110 Expression analysis using oligonucleotide arrays confirms that the mutant receptor

111 We have therefore designed a high-density oligonucleotide array containing all known mouse olfacto

112 Using an oligonucleotide array containing sequences complementary

113 lood cells of 12 unrelated individuals using oligonucleotide arrays containing 8406 exonic SNPs.

114 Through analysis of high-density oligonucleotide arrays containing approximately 36,000 m

115 ing of endothelial cells was performed using oligonucleotide arrays containing probes designed to det

116 Oligonucleotide arrays containing probes spaced on avera

117 Oligonucleotide arrays, coupled with use of a dominant-n

118 Several issues inherent to short oligonucleotide arrays -- cross-hybridization, or variab

119 e useful statistical models for probe-level, oligonucleotide array data based on a multiplicative par

120 Using oligonucleotide array data from 30 recombinant inbred li

121 Oligonucleotide array data obtained during shoot develop

122 Analysis of oligonucleotide array data, especially to select genes o

123 applicability for improving the analysis of oligonucleotide array data.

124 We apply our method to simulated and oligonucleotide array data.

125 Our results demonstrate that oligonucleotide arrays designed for CGH provide a robust

126 re we report the application of high-density oligonucleotide array (DNA chip)-based analysis to deter

127 ls were detected by hybridization of mRNA to oligonucleotide arrays (DNA chip) and by ELISA.

128 Pairs of high density oligonucleotide arrays (DNA chips) consisting of >96 000

129 We explored the utility of high-density oligonucleotide arrays (DNA chips) for obtaining sequenc

130 High density oligonucleotide arrays (DNA chips) have been used in two

131 These features also suggest applications in oligonucleotide array/DNA chip technology when higher hy

132 data set comprising 204 in-situ synthesized oligonucleotide arrays, each hybridized with two-color c

133 The data included 25 Affymetrix high-density oligonucleotide array experiments, 23 expressed sequence

134 lar smooth muscle cells, newly identified by oligonucleotide array expression analysis.

135 mine the detailed hybridization patterns in oligonucleotide array expression data for evidence of ge

136 elic state of the major QTL on chromosome 5, oligonucleotide array expression patterns for genes in t

137 These results expand the utility of oligonucleotide arrays fabricated on plastic substrates

138 e DNMT3B mutations and on control LCLs using oligonucleotide arrays for approximately 5600 different

139 Here we describe the use of high-density oligonucleotide arrays for genome-wide scans for LOH and

140 sults are relevant to the design of improved oligonucleotide arrays for high-throughput copy-number g

141 n used to design and synthesize high-density oligonucleotide arrays for monitoring the expression lev

142 These results demonstrate the use of oligonucleotide arrays for the analysis of two-hybrid sc

143 performance measurements on three commercial oligonucleotide array formats that differ in probe desig

144 A high-density oligonucleotide array formatted for mRNA expression and

145 nal regulation of target genes, we performed oligonucleotide-array gene expression analysis by using

146 acy of microarray measurements obtained with oligonucleotide arrays (GeneChip, Affymetrix) with a lab

147 High-density oligonucleotide arrays (GeneChip, Affymetrix, Santa Clar

148 by bulk segregant analysis with high-density oligonucleotide array genotyping to a small putative Myb

149 High-density oligonucleotide arrays have become a popular assay for c

150 High density oligonucleotide arrays have been used extensively for ex

151 High-density oligonucleotide arrays have enabled the identification o

152 High Density Oligonucleotide arrays (HDONAs), such as the Affymetrix

153 oB and 16S genes and by analysis of the rpoB oligonucleotide array hybridization patterns.

154 s and subjected to transcriptome analysis by oligonucleotide array hybridization.

155 a host of possibilities for applications of oligonucleotide array hybridization.

156 Here, we use oligonucleotide arrays hybridized with RNA from livers o

157 Oligonucleotide arrays hybridized with RNA made from liv

158 These results demonstrate the usefulness of oligonucleotide arrays in monitoring mammalian gene expr

159 We profiled gene expression using Affymetrix oligonucleotide arrays in the BXD recombinant inbred str

160 We have used high-density oligonucleotide arrays, in combination with somatic cell

161 s RNA targets to an Arabidopsis whole-genome oligonucleotide array indicate that commonly stress-asso

162 mic hybridization using a custom Agilent 1 M oligonucleotide array intended to cover 197 332 unique e

163 Affymetrix GeneChip high-density oligonucleotide arrays interrogate a single transcript u

164 Using WGLRH and high-density oligonucleotide arrays interrogating 116 204 SNPs, we ra

165 A fiber optic microsphere-based oligonucleotide array is described that employs the sequ

166 monstrate that this first-generation porcine oligonucleotide array is informative and the specificity

167 A limitation of oligonucleotide arrays is the requirement of relatively

168 periments that involve multiple high density oligonucleotide arrays, it is important to remove source

169 ecipitation (MeDIP) profiles generated using oligonucleotide arrays (MeDIP-chip) or next-generation s

170 We used rat islet-specific oligonucleotide arrays (Metabolex Rat Islet Genechips) t

171 The oligonucleotide array method described in this paper pro

172 A combination of oligonucleotide arrays, multiplex PCR analysis and singl

173 A 6.9 million-feature oligonucleotide array of the human transcriptome [Glue G

174 g a human colon cancer dataset consisting of oligonucleotide arrays of normal, adenoma and carcinoma

175 Affymetrix's high-density oligonucleotide arrays offer an exciting technology in b

176 High-density oligonucleotide arrays offer the opportunity to examine

177 t performance was achieved with high-density oligonucleotide arrays, oligonucleotides >/=50 bases (b)

178 ession analysis using the Affymetrix HG U133 oligonucleotide arrays on 85 diffuse infiltrating glioma

179 Chromosomes 21 and 22 by using high-density oligonucleotide arrays on cytosolic poly(A)(+) RNA.

180 This work describes the in situ synthesis of oligonucleotide arrays on glass surfaces.

181 tigated the kinetics of DNA hybridization to oligonucleotide arrays on high-capacity porous silica fi

182 idization with Affymetrix human high-density oligonucleotide arrays or GeneChip using distantly relat

183 We have evaluated the effectiveness of an oligonucleotide array, originally designed to detect sin

184 comparative genomic hybridization on a 185K oligonucleotide array platform.

185 ing performance of the two main high-density oligonucleotide array platforms in the ENCODE regions of

186 onance imaging (SPRi) on in situ synthesized oligonucleotide arrays prepared on carbon-on-metal subst

187 DA) using direct sequencing and high density oligonucleotide arrays probing >10,000 SNP alleles.

188 nt array-based CNV detection platforms, long-oligonucleotide arrays promise the highest resolution.

189 Our custom sugarcane oligonucleotide array provides sensitivity and good cove

190 massively parallel synthesis of high-density oligonucleotide arrays provides a potential source, once

191 how that DNA hybridization with high-density oligonucleotide arrays provides rapid and convenient det

192 Using oligonucleotide arrays, real-time PCR and protein blots,

193 Oligonucleotide arrays, real-time reverse transcription-

194 atch can be differentiated with phylogenetic oligonucleotide arrays, reliable specific detection at t

195 ata from 11 rat tissues using a high-density oligonucleotide array representing 1600 rat genes.

196 hree independent experiments to a commercial oligonucleotide array representing more than 22,000 tran

197 ssion in vivo in mouse liver and heart using oligonucleotide arrays representing 12,488 genes.

198 brain ageing at the molecular level, we used oligonucleotide arrays representing 6,347 genes to deter

199 Use of high-density oligonucleotide arrays representing 6347 genes revealed

200 hyperplasia (MNH) using Affymetrix HG_U95Av2 oligonucleotide arrays representing approximately 10,500

201 Using high-density oligonucleotide arrays representing essentially all nonr

202 was generated using the Murine Genome U74Av2 oligonucleotide array (representing approximately 6000 w

203 Hybridization with oligonucleotide arrays revealed sequence divergence in t

204 single glass wafer containing 49 individual oligonucleotide arrays separated by gaskets within a cus

205 roarray analysis using a whole-genome 60-mer oligonucleotide array showed that the dms operon is indu

206 ee different generations of Affymetrix Human oligonucleotide arrays, showed significant improvement i

207 rom various tissues to a set of high-density oligonucleotide arrays spanning the entire genome allowe

208 Oligonucleotide arrays synthesized on the carbon-on-meta

209 Oligonucleotide arraying technologies will allow analysi

210 ent in situ hybridization, cell sorting, and oligonucleotide array technology are currently being exp

211 High density oligonucleotide array technology is widely used in many

212 In this report, we have used oligonucleotide array technology to perform expression p

213 d for each array, we anticipate that ink-jet oligonucleotide array technology will be useful in a wid

214 phils and of HL-60 cells using long (70-mer)-oligonucleotide array technology.

215 Using Affymetrix HuGene FL oligonucleotide arrays, temporal expression profiles of

216 ensor chip based on an allele-discriminating oligonucleotide array that enables genotyping for both m

217 132 diagnostic samples using higher density oligonucleotide arrays that allow the interrogation of m

218 morphisms (SNPs), using generic high-density oligonucleotide arrays that contain thousands of presele

219 Oligonucleotide arrays that detect single nucleotide pol

220 es in two human cell lines with high-density oligonucleotide arrays that enable the measurement of de

221 esence or absence of mutants was detected by oligonucleotide arrays that hybridize to 20-nucleotide "

222 ently, Affymetrix developed the high-density oligonucleotide arrays that tile all the non-repetitive

223 sed a method for light-directed synthesis of oligonucleotide arrays that we developed to generate two

224 position of the poly(A) addition site using oligonucleotide arrays tiling 1% of the human genome.

225 Here, we use a high-density oligonucleotide array to generate expression profiles of

226 The recent application of high-density oligonucleotide arrays to allele identification has made

227 We used oligonucleotide arrays to analyze gene expression of the

228 Here, we used TCR-transgenic Th cells and oligonucleotide arrays to analyze the differences betwee

229 We have used oligonucleotide arrays to analyze the gene expression pr

230 We used high-density oligonucleotide arrays to analyze the transcriptional pr

231 Using oligonucleotide arrays to assay mRNAs at different phase

232 We have used Affymetrix high-density oligonucleotide arrays to demonstrate that EGFR-overexpr

233 Here we use high-density oligonucleotide arrays to discover 11,115 single-feature

234 Here, we use high-density oligonucleotide arrays to discover an extremely dense se

235 s by converting high-density single-stranded oligonucleotide arrays to double-stranded (ds) DNA array

236 We used high-density oligonucleotide arrays to explore changes in expression

237 We used high-density oligonucleotide arrays to explore the effects of gene tr

238 We have used ATH1 oligonucleotide arrays to follow gene expression in opr3

239 this study, we used Affymetrix high-density oligonucleotide arrays to identify the global gene expre

240 We used high-density oligonucleotide arrays to identify the mRNAs differentia

241 The use of high-density oligonucleotide arrays to measure the expression levels

242 We used high-density oligonucleotide arrays to measure the relative expressio

243 We have created double-stranded oligonucleotide arrays to perform highly parallel invest

244 or molecular targeting, we utilized scanning oligonucleotide arrays to probe the secondary structure

245 ion of BAC-based and high-density customized oligonucleotide arrays to resolve the molecular basis of

246 We used hybridization to high-density oligonucleotide arrays to search for native genes whose

247 We have previously used high-density oligonucleotide arrays to show that CR can prevent or de

248 We have used high-density oligonucleotide arrays to study global circadian gene ex

249 We used oligonucleotide arrays to study nearly 6000 genes in hum

250 ether with the ATH1 Arabidopsis whole-genome oligonucleotide array, to identify genes that are prefer

251 ed cRNA hybridized to the human high-density oligonucleotide array (U95Av2).

252 We have designed a prokaryotic high density oligonucleotide array using the complete Escherichia col

253 Fabrication of high density oligonucleotide arrays using metal on glass photolithogr

254 We produced spotted oligonucleotide arrays using two large collections of ap

255 irst showed that fluorescent signal from the oligonucleotide array varies in proportion to both decre

256 A simple and efficient oligonucleotide array was developed to identify single n

257 ene expression profiling using a 16 755-gene oligonucleotide array was performed to identify transcri

258 cificity of identifying HLA-B SNPs using the oligonucleotide arrays was evaluated by blinded analysis

259 The bias observed with the commercial oligonucleotide arrays was less predictable and calibrat

260 Using Affymetrix (Santa Clara, CA) oligonucleotide arrays we have identified C/EBPalpha tar

261 Using DNA methylation inhibitors and oligonucleotide arrays we have identified perforin as a

262 ipitation and expression analysis on a tiled oligonucleotide array, we identified a gain-of-function

263 Using oligonucleotide arrays, we examined changes in global ge

264 Using high-density oligonucleotide arrays, we examined the gene expression

265 Using oligonucleotide arrays, we first identified a cohort of

266 rays, especially from recent high-resolution oligonucleotide arrays, we found some evidence that up t

267 Using oligonucleotide arrays, we found that pDC-MM interaction

268 Using high-density oligonucleotide arrays, we have examined the gene-expres

269 Using oligonucleotide arrays, we have identified 33 genes that

270 Using oligonucleotide arrays, we identified 625 genes differen

271 Using high-density oligonucleotide arrays, we measured expression of >12,00

272 By using high-density oligonucleotide arrays, we profiled gene expression in r

273 Using oligonucleotide arrays, we refined the breakpoints of th

274 By using chips bearing oligonucleotide arrays, we show that, after exposure to

275 Recently, oligonucleotide arrays were in situ synthesized on carbo

276 Long oligonucleotide arrays were slightly more sensitive at d

277 Spotted long oligonucleotide arrays were suitable for use with both u

278 Affymetrix oligonucleotide arrays were used to analyse 86 lung aden

279 High-density oligonucleotide arrays were used to analyze gene express

280 GeneChip Affymetrix oligonucleotide arrays were used to assess global transc

281 High-density oligonucleotide arrays were used to collect data in the

282 High-density oligonucleotide arrays were used to compare gene express

283 High-density oligonucleotide arrays were used to determine the sequen

284 High-density oligonucleotide arrays were used to identify genes diffe

285 High-density oligonucleotide arrays were used to monitor global chang

286 High-density oligonucleotide arrays were used to profile approximatel

287 Oligonucleotide arrays were used to profile gene express

288 Oligonucleotide arrays were utilized to analyze the tran

289 s determined using Affymetrix wheat GeneChip oligonucleotide arrays which have probes for 55,052 tran

290 acteristics allows the prospective design of oligonucleotide arrays which show increased sensitivity

291 ysate-pulsed-DCs, using Affymetrix MG-U74Av2 oligonucleotide arrays, which contain approximately 12,0

292 The method combines oligonucleotide arrays, which offer the benefits of high

293 responses to drought using a custom designed oligonucleotide array with 21,901 different probes.

294 nd human B cell line (BJAB) were analyzed by oligonucleotide array with approximately 22,000 human tr

295 expression analysis of prostate cancer using oligonucleotide arrays with 63,175 probe sets to identif

296 Using high-density oligonucleotide arrays with 7129 gene probe sets, compre

297 it is possible to synthesize plastic-backed oligonucleotide arrays with feature sizes as small as 14

298 sing IRF-5 or IRF-7 were determined by using oligonucleotide arrays with probe sets representing abou

299 Screening oligonucleotide arrays with RNA from these cells uncover

300 otide polymorphisms (SNPs) with high-density oligonucleotide arrays without the need for locus-specif