ライフサイエンスコーパス: opal

1 cluding gypsum, clays, and amorphous silica (opal).

2 sembling the geological formation of natural opal.

3 ER force field as implemented in the program OPAL.

4 DIANA and energy-minimized with the program OPAL.

5 ion of an MIP film in the form of an inverse opal.

6 ase results in a mesostructured AgCl inverse opal.

7 es that are subsequently occluded within the opal.

8 or at the inefficient termination signal Pro-opal.

9 visual appearance of self-assembled polymer opals.

10 9 +/- 1.6), and gain in CAL (1.7 +/- 1.5), V-OPAL (2.1 +/- 1.9), and H-OPAL (4.7 +/- 1.4) were observ

11 Th proxy), phytoplankton productivity (using opal, (231)Pa/(230)Th and excess Ba), and the degree of

12 L (1.7 +/- 1.5), V-OPAL (2.1 +/- 1.9), and H-OPAL (4.7 +/- 1.4) were observed (P < or = 0.05).

13 a set of immune marker antibodies, with the Opal 7 color Kit (PerkinElmer) in the same tissue sectio

14 Chimera uses Opal, a toolkit for wrapping scientific applications as

15 e applications on the servers are powered by Opal, a toolkit that allows users to wrap scientific app

16 erial is silica-rich ( approximately 39 wt.% opal-A and/or high-SiO2 glass and opal-CT), volatile-bea

17 Here we present deep-sea records of biogenic opal accumulation and sedimentary nitrogen isotopic comp

18 n sinking fluxes and the spatial patterns of opal accumulation in oceanic systems with different temp

19 ord that suggests the paradoxical decline in opal accumulation rate in the glacial EEP results from a

20 d in underlying glacial sediments, but lower opal accumulation rates cast doubts on the importance of

21 g well-defined mesostructured silver inverse opal (Ag-IO) electrodes, it is demonstrated that mesostr

22 ques: The Optimized PatchMatch Label fusion (OPAL) algorithm for localising and approximately segment

23 Opal allows both web forms-based access and programmatic

24 Opal also outperforms all sense codons because opal-to-s

25 We observed extensive opal and amber stop codon reassignments in bacteriophage

26 s Basin, subglacial chemical precipitates of opal and calcite record accumulation of (234)U (the prod

27 on records of sedimentary (230)Th-normalized opal and nannofossil carbonate fluxes and [(231)Pa/(230)

28 rRNA, however, lowered tagging levels at Pro-opal and rare Arg codons, but not at the 3' end of an mR

29 The aromatic profiles of Dark Opal and Red Rubim varieties (in vivo plants, in vitro s

30 limited by the storage formats available in Opal and the analysis capabilities available in the Data

31 The tantalizing colours of precious opals and the colour of some species of birds are exampl

32 enomic sequences encoding both a stop codon (opal) and an open reading frame (arginine) as a general

33 he vertical open probing attachment level (V-OPAL) and horizontal open probing attachment level (H-OP

34 hotonic structures, including multi-layered, opal, and chiral structures, as well as photonic network

35 nding monoliths, nanomesh materials, inverse opals, and dense gram-scale nanocrystalline powders of i

36 port here an oriented peptide array library (OPAL) approach that should facilitate high throughput pr

37 dered macroporous (3DOM) products or inverse opals are of interest for numerous applications, both fo

38 horizontal open probing attachment level (H-OPAL), as well as furcation entrance width (FW) and heig

39 Gold inverse opal (Au-IO) thin films are active for CO2 reduction to

40 ple Python program to demonstrate how easily Opal-based web services can be accessed from within an a

41 nents to sediments (organic carbon, biogenic opal, biomarkers), although other factors than productiv

42 Enhanced diatom opal burial in Sargasso Sea sediments indicates that sil

43 We show that opal burial rates, and thus upwelling, were enhanced dur

44 These robust SiO(2) inverse opals can be transformed into various materials that ret

45 Finally, OpAL* captures risky choice patterns arising from DA and

46 degrading dropwise condensation, the inverse opal coated copper tubes maintained high heat transfer r

47 ean copper tubes to 80 kW/m(2) K for inverse opal coated copper tubes; nearly a sevenfold increase fr

48 les or Co3O4 nanoplatelets, and SiO2 inverse opals coated with Fe3O4 are fabricated, all of which sho

49 Ni inverse opals coated with SnO2 nanoparticles or Co3O4 nanoplatel

50 ed at the uracil target causing reversion of opal codon 14 in the Escherichia coli lacZalpha gene.

51 ysteine (Sec) incorporation requires the TGA opal codon and a downstream Sec insertion sequence (SECI

52 ge is provided to ONNV by the presence of an opal codon between nsP3 and nsP4 in Anopheles gambiae, s

53 ntage provided to ONNV by the presence of an opal codon between nsP3 and nsP4 is related to mosquito

54 translationally inserted at a predefined UGA opal codon by means of Sec-specific translation machiner

55 ression of GPx3(x73c), a peroxidase-negative OPAL codon mutant, in DU145 and PC3 cells also increased

56 We show that the Sindbis virus (SINV) opal codon outperforms other stop codons in primate cell

57 cleotide) gapped DNA substrate containing an opal codon to assess the effect of the amino acid substi

58 hich suppression of the selenocysteine (Sec) opal codon was coupled to bacteriophage plaque formation

59 corporated into proteins by recoding the UGA opal codon with a specialized elongation factor (SelB in

60 led to efficient, orthogonal suppressors of opal codons and the four-base codon, AGGA.

61 degrees C dampens the fitness advantages of opal codons.

62 In-frame TGA (opal) codons are found in most genes (85%), often at loc

63 Graphite inverse opals, comprising 40-angstrom-thick layers of graphite s

64 the Mid-Pleistocene Transition, have higher opal content, particle size, and porosity, which reduce

65 the snow-capped (Lepidothrix nattereri) and opal-crowned (Lepidothrix iris) manakins of the Amazon b

66 manakin) or iridescent whitish-blue to pink (opal-crowned manakin) in parental species but are a much

67 Porous silica opal crystals were sintered to form an intersphere inter

68 ly 39 wt.% opal-A and/or high-SiO2 glass and opal-CT), volatile-bearing (16 wt.% mixed cation sulfate

69 Patient Outcomes in Australian Rheumatology (OPAL) data set.

70 SR1 encodes a divergent tRNA(Gly)UCA with an opal-decoding anticodon.

71 ration of the host rocks and later sealed in opal deposited by silica-rich fluids derived from the co

72 between weaker ACC flow, equatorward-shifted opal deposition and reduced atmospheric CO(2) during gla

73 urally occurring amorphous silica (including opal) deposits, suggesting that incorporation of U into

74 When applied to macroporous inverse opal electrodes, the benefits of higher loading and incr

75 The Opal-enabled service model is useful for a wide range of

76 OpAL* exhibits robust advantages over alternative models

77 This generated specific carbon and opal export regimes turning the glacial seasonal sea-ice

78 al ordered porous materials known as inverse opal films (IOFs) were synthesized using nanocrystals wi

79 s shown to facilitate the rapid "melting" of opal films even in the absence of "visible" absorption.

80 high-quality, chemically tailorable inverse opal films for a variety of applications.

81 ssembling highly ordered, crack-free inverse opal films over a centimeter scale.

82 and inhomogeneities of the resulting inverse opal films.

83 is finding, along with similar shifts in the opal flux record, suggests that millennial-scale events

84 Here, we present Opal for metagenomic binning, the task of identifying th

85 and geochronologic data provide evidence for opal formation during cold periods via cryoconcentration

86 This finding makes opal formed by rocks weathering a new, complementary sou

87 irst record of an animal fossil preserved in opal formed by weathering with such high-resolution deta

88 amplification of absorption in low contrast opals formed by the self-assembly of polymer-tethered pa

89 Here we use the geochemistry of opal-forming organisms from different water depths to de

90 mbinants that adhere to cells via GC OpaA or Opal fusion proteins, suggesting that additional neisser

91 On public benchmarks, Opal halves the error on precision/recall (F1-score) as

92 of notoriety, including diamond and inverse opal, have proven difficult to synthesize.

93 cking performances for porous copper inverse opals having pore diameters from 300 to 1000 nm by measu

94 he Open-community Profiling Assessment tooL (OPAL) implements commonly used performance metrics, incl

95 codon reassignments in bacteriophages and of opal in bacteria.

96 Front and the subsequent burial of biogenic opal in underlying sediments are limited by this silicon

97 sotope measurement of diatom and radiolarian opal, in combination with numerical simulations.

98 first generation QS, as probed on 3D-inverse opal indium tin oxide electrodes at 8.5 sun irradiance (

99 Here, we show that an inverse opal-indium tin oxide electrode hosts a large population

100 OPAL integrates the principles of both the oriented pept

101 In OpAL*, learning induces opponent pathways to differentia

102 han Farrar's 'striped' approach, however the opal library is faster for single-threaded applications.

103 racteristics with a gold-standard reference (Opal Mobility Lab, APDM).

104 We develop the OpAL* model to assess the normative advantages of this c

105 ble to modify this pair to decode either the opal nonsense codon, TGA, or the four-base codon, AGGA,

106 lanets such as Mars, where weathering-formed opal occurs.

107 e between nsP3 and nsP4 was replaced with an opal, ochre, or amber stop codon.

108 ordered binary superlattices (also known as opals or colloidal crystals), retaining the size tunable

109 o a lipophilic Pt(IV) complex [Pt(DACH)(OAc)(OPal)(ox)] (1), containing both lipophilic and hydrophil

110 [Pt(DACH)(OAc)(OPal)(ox)] incorporated nanoparticles (2) presented a me

111 Inside the capillary tube, inverse opal photonic crystal (IO PhC) was fabricated using the

112 o acting as a dielectric mirror, the inverse opal photonic crystal caused a significant change in dye

113 sion, and third, a three-dimensional inverse opal photonic crystal made by conformal coating of a sel

114 TiO(2) inverse opal photonic crystals (IOPCs) were fabricated by using

115 In parallel, we show that an OPAL platform with a fixed methylarginine residue can be

116 eased readthrough of all stop codons reduces opal preference at 28 degrees C in primate and mosquito

117 The carbon inverse opals provide examples of both dielectric and metallic o

118 thermal neutron flux available at the 20 MW OPAL research reactor are described.

119 Both diamond and glassy carbon inverse opals resulted from volume filling.

120 In addition, Opal's programmatic access capability allows our applica

121 ith a tight control over pore sizes, inverse opal scaffolds have found widespread use in biomedical a

122 e highlight the unique advantages of inverse opal scaffolds over their non-uniform counterparts.

123 Inverse opal scaffolds, in contrast, possess uniform pores inher

124 elastomeric photonic crystals termed polymer opals showing extremely strong tunable structural colour

125 D nanostructures in the form of silk inverse opals (SIOs) is reported.

126 is paper presents the Open Air Laboratories (OPAL) Soil and Earthworm Survey as an example of public

127 uito host the functional significance of the opal stop codon in an alphavirus genome.

128 This mutation is a de novo premature opal stop codon in KEAP1 that is translationally recoded

129 The presence of an opal stop codon upstream of nsP4 nearly doubled (75.5%)

130 These include a novel amino acid use for the opal stop codon, an archaeal-type purine synthesis in Ba

131 codon that does not operate as the canonical opal stop codon.

132 cysteine incorporation occurs in response to opal stop codons and is dependent on the presence of a s

133 Four mutations resulting in opal stop codons were individually engineered into a pla

134 tric matrix (8-9 gap; the so called 'inverse-opal' structure).

135 on the use of water-soluble biopolymer-based opal structures that can be reformed with high resolutio

136 a copper tube is coated with silica inverse opal structures.

137 lf-assembly of well-ordered, porous "inverse opal" structures for optical, electronic, and (bio)chemi

138 In vitro aminoacylation assays and in vivo opal suppression assays showed that B. subtilis TrpRS (B

139 nucleotide determines whether the endogenous opal suppression pathway competes with co-translational

140 icating the endo-genous tryptophan-inserting opal suppression pathway.

141 ctive assay that couples phage production to opal suppression.

142 P97 protein expressed in an Escherichia coli opal suppressor host and M. hyopneumoniae bound specific

143 clones in a genomic library expressed in an opal suppressor host because of alternate codon usage by

144 orthogonal 21st synthetase-amber, ochre and opal suppressor tRNA pairs including the first report of

145 An opal suppressor tRNA served as a functional probe to exa

146 ransfer RNA (tRNA) synthetase (TrpRS)-mutant opal suppressor tRNA(Trp) (mutRNA(UCA)(Trp)) pair was ge

147 Amber, ochre and opal suppressor tRNAs with a wide range of activities in

148 We show that amber, ochre and opal suppressor tRNAs, derived from Escherichia coli glu

149 We used a La-dependent opal suppressor, tRNASerUGAM, which suppresses ade6-704

150 mics selenocysteine tRNA and may function as opal suppressor.

151 l gene as a reporter, that amber, ochre, and opal suppressors derived from the serine and tyrosine tR

152 s produced when translation terminates at an opal termination codon between nsP3 and nsP4.

153 translational readthrough occurs or when the opal termination codon has been replaced by a sense codo

154 -transmitted alphaviruses encode a premature opal termination codon upstream of their viral polymeras

155 he regulated suppression of amber, ochre and opal termination codons in mammalian cells.

156 these frameshifted sequences contain a UGA (opal) termination codon.

157 r in Escherichia coli to decode amber (TAG), opal (TGA), and four-base (AGGA) codons.

158 ches to each stage yields a new tool we call Opal that on benchmark alignments matches the quality of

159 lids is similar to that of natural U-bearing opals that retain U for millions of years.

160 rchitecture ("resources") for DataSHIELD and Opal to allow large, complex datasets to be used at thei

161 n nsP3 (positions 386 to 403), and nsP3 537 (opal to Cys; avirulent to virulent), as well as a single

162 the use of Oriented Peptide Array Libraries (OPALs) to methodically dissect the preferred methylation

163 al also outperforms all sense codons because opal-to-sense substitutions lead to excess polyprotein p

164 The Opal toolkit currently supports SOAP-based Web service a

165 Geochemical proxies (biogenic opal, total organic carbon, C/N ratio, carbon isotope of

166 structed that efficiently suppressed the lac opal U4 mutation in E. coli.

167 Although the frequency with which the opal virus disseminated from the mosquito midgut did not

168 egan earlier in mosquitoes infected with the opal virus.

169 DataSHIELD uses Opal which is a data integration system used by epidemio