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1 ormation through the computational design of overlapping genes.
2 characterize the genetic regulation of these overlapping genes.
3 rresponded inversely to transcript levels of overlapping genes.
4 Most terminases are encoded by two partially overlapping genes.
5  kinase and BDNF pathways were enriched with overlapping genes.
6  that favor the preservation of functionally overlapping genes.
7  disequilibrium patterns and the presence of overlapping genes.
8 ey should now be referred to as separate but overlapping genes.
9 he combination therapy to be unique with few overlapping genes.
10 he statistical significance of the number of overlapping genes.
11 etase classes have originated from a pair of overlapping genes.
12 '-end heterogeneity and the presence of many overlapping genes.
13 sponded positively with transcript levels of overlapping genes.
14 y, if at all, coupled, similar to convergent overlapping genes.
15 gnals randomly incorporated throughout these overlapping genes.
16 ption, RNA stability or translation of their overlapping genes(1,2).
17 with few overlapping genes and (2) among the overlapping genes, a set of putative oncogenes/tumor sup
18 erences between probe sequence locations and overlapping genes across CodeSets.
19                               The unique and overlapping gene activity pattern detected reveals a com
20 fecting two distinct transcriptomes with few overlapping genes and (2) among the overlapping genes, a
21  We performed RNA-sequencing, identified 593 overlapping genes and confirmed these genes are highly e
22 transition between overlapping genes and non-overlapping genes and demonstrates the high rates of evo
23 deeper exploration of natural and engineered overlapping genes and facilitates enhanced genetic stabi
24 ed low Ks domain persists on analysis of non-overlapping genes and in Bacillus, where fast optimal co
25 In addition, it corrects for the presence of overlapping genes and linkage disequilibrium (LD).
26 tifunctional genomes that frequently contain overlapping genes and non-coding functional elements emb
27 nding of the evolutionary transition between overlapping genes and non-overlapping genes and demonstr
28 ner in which HIV minimizes the constraint of overlapping genes and repurposes that constraint to its
29 ds, including the identification of small or overlapping genes and the assessment of mRNA splicing or
30              We show that gHFI and sM affect overlapping genes and the average number of gHFI in canc
31 ds, but reliable detection is complicated by overlapping genes and transcripts as well as the presenc
32 , have homologs in more microbes than do non-overlapping genes, and are therefore likely more conserv
33 lustering was used to identify pathways with overlapping genes, and clusters with an excess of associ
34 lyses of the coding potential of UAG codons, overlapping genes, and release factor sequences suggest
35                     The catalog of CNVs, CNV-overlapping genes, and their genotypes in a top model di
36                            Here we show that overlapping genes are a consistent feature (approximatel
37  examples of gene fusions and of potentially overlapping genes are also noted.
38 ns of the results for expression of in-frame overlapping genes are discussed.
39                           Typically, the two overlapping genes are encoded on opposite DNA strands.
40 istribution, among other characteristics, of overlapping genes are most consistent with the hypothesi
41            Increasing evidence suggests that overlapping genes are much more common in eukaryotic gen
42                                        These overlapping genes are predicted to code for a heterodime
43              For novel genes, three cases of overlapping genes are predicted.
44                                     Small or overlapping genes are prevalent across all domains of li
45          However,the origin and evolution of overlapping genes are still unknown.
46 tutive lin-4 containing RNAs derived from an overlapping gene, are processed to mature lin-4 miRNA.
47 r hypotheses: that reduced Ks is a) owing to overlapping genes, b) reflects an extended slow translat
48  of genes, increased antisense transcription overlapping gene bodies, and reduced nucleosome occupanc
49  of transcriptional start sites, demarcating overlapping gene boundaries, and identifying regulatory
50 nt analysis, and disentangles the effects of overlapping genes by a functional extension of the elast
51 ed this fact in an ad hoc manner to look for overlapping genes by motif matching.
52                                  Analysis of overlapping genes can help in understanding the mode of
53 king Pathway Analysis with Down-weighting of Overlapping Genes, CERNO and over-representation analysi
54               Mutant screens have identified overlapping gene classes mediating synaptogenesis.
55             In some loci with same direction overlapping gene configurations, polyA read-through is n
56 kdown analysis of SMARCAD1 and CBP indicated overlapping gene control, and ChIP-seq analysis of these
57                        We show that modeling overlapping gene conversions is crucial for improving th
58 tations in one gene differentially affect an overlapping gene, depending on phase).
59 e CNV events and found several important CNV-overlapping genes (e.g. EDNRA, ADAMTS20, ASIP, KDM5B, AD
60 ation (R-M) system consists of two partially overlapping genes, eco29kIR, encoding a restriction endo
61  and insects, have the unique feature of two overlapping genes encoded on opposite strands, comprisin
62 tions in the INK4a locus may also affect the overlapping gene encoding p19ARF and the adjacent gene e
63                           Despite regulating overlapping gene enhancers and pathways, CREBBP and KMT2
64 deficiency induced prominent upregulation of overlapping genes enriched in neuroinflammation, similar
65 ations provided evidence that an additional, overlapping gene exists at this locus.
66 e RaSH-derived genes was used to distinguish overlapping gene expression changes occurring in PHFA as
67 nisms of drug resistance causing distinct or overlapping gene expression changes were generated bioin
68                            A large number of overlapping gene expression changes were observed in the
69  role in regulating cellular growth and that overlapping gene expression changes, also induced by IFN
70 d likely pathogenicity in these variants and overlapping gene expression for 17 genes from our transc
71 ATF6beta revealed that these factors control overlapping gene expression networks that include numero
72 technique allowed us to resolve abutting and overlapping gene expression of different transcripts.
73 al optic neuroepithelium is characterized by overlapping gene expression patterns and that selective
74                                              Overlapping gene expression patterns in leaves and spike
75            We hypothesized that distinct and overlapping gene expression patterns in SSc-PAH versus I
76 ommon origin of erythroid cells and MKs, and overlapping gene expression patterns, the MK IR program
77 d regions are co-acting enhancers regulating overlapping gene expression patterns.
78 teristic molecular phenotype with unique and overlapping gene expression patterns.
79 ucing drug dihydroergotamine (DHE), regulate overlapping gene expression programs in AML and repress
80 ulated with Type I or II IFN activate highly overlapping gene expression programs.
81 the two populations of cells exhibit largely overlapping gene expression.
82 these sequence motifs encode multiple, often overlapping, gene expression programs is central to unde
83      Microarray analyses reveal a unique but overlapping gene-expression program activated by cytosol
84 different classifier sets harbor only modest overlapping gene features but have similar levels of acc
85                                 Among the 19 overlapping genes, five were found to show discordant re
86 s recombination between AAV vectors carrying overlapping gene fragments.
87 ternative for performing IUTs in identifying overlapping genes from multiple gene lists derived from
88                               First, because overlapping gene functions are maintained in populations
89                                          Are overlapping gene functions perhaps maintained because of
90 ly active regions of the genome that contain overlapping genes, genes that produce numerous transcrip
91                                              Overlapping gene groups (OGGs) arise when exons of one g
92 mes are exceptionally compact, with numerous overlapping genes, highly reduced spacers, loss of all c
93 rting this hypothesis, we cloned from ECOR-9 overlapping genes, ibrA and ibrB (designation is derived
94 ated with underweight status, with 503 (70%) overlapping genes identified overall.
95                     The products of in-frame overlapping genes II and X carried by the filamentous ph
96          Here, we extend studies of in-frame overlapping genes II and X from filamentous phage f1 to
97                         spdB1 and spdB2, two overlapping genes immediately 3' to P(opimp) and directl
98                            The design of two overlapping genes in a microbial genome is an emerging t
99 is study we identified and characterized the overlapping genes in a set of 13,484 pairs of human-mous
100                             Transcription of overlapping genes in EBOV bicistronic minigenomes follow
101                  We identified 1316 pairs of overlapping genes in humans and mice and studied their e
102                                     In-frame overlapping genes in phage, plasmid and bacterial genome
103 formation, annotation of all transcripts and overlapping genes in the region and legacy exon and amin
104                                There are two overlapping genes in this region: the transcription fact
105                                          The overlapping genes included those involved in CVD (lipid
106 st DNA-Damage (Gadd) genes comprise a set of overlapping genes, including known (IRF-1, EGR-1, Jun) a
107 nvolved closely related strains with broadly overlapping gene inventories, each genome contains a lar
108  difference between the two different-strand overlapping genes is less dramatic.
109  modern breeding, and discovers numerous SVs overlapping genes known to regulate important breeding t
110  traditional approaches that usually exclude overlapping genes, leaderless transcripts and non-conser
111 randomization we have rapidly constructed 60 overlapping gene libraries that encode zinc finger prote
112 hooses optimal open reading frames, resolves overlapping gene loci, and finds additional gene copies
113 aps, raising the possibility that two of the overlapping genes may not be functional.
114                         This distinct set of overlapping genes may represent the signature profile of
115 ovided as individual reports specific to non-overlapping, gene-model-centric genomic loci.
116 imited to, genes encoding short transcripts, overlapping gene models, and gene family size.
117                       We further demonstrate overlapping gene networks in mature oligodendrocytes pre
118                                 Among the 18 overlapping genes, nine genes exhibited the same directi
119 gene in mice without disturbing a conserved, overlapping gene of unknown function that is oriented ta
120                                              Overlapping genes of the type suggested by the IS1414 co
121                                              Overlapping genes (OLGs) are common in viruses and have
122 lones, miscategorized as reversed, represent overlapping genes on the opposite strand of entries in t
123 use they may interfere with transcription of overlapping genes or the progress of replication forks.
124 he results suggest that additional rare CNVs overlapping genes outside of the 22q11.2 deletion region
125 thod Pathway Analysis with Down-weighting of Overlapping Genes (PADOG).
126                  We found that the antisense overlapping gene pair of Delta(1)-pyrroline-5-carboxylat
127       In the case of T4, a deletion of a non-overlapping gene pair pseT.2 and pseT.3 identified as Rz
128                           We have found that overlapping gene pairs are more conserved and are enrich
129  highly correlated in gene expression, while overlapping gene pairs in which one member of the pair r
130                     The design of functional overlapping gene pairs is a challenging procedure, and c
131                       A potential benefit of overlapping gene pairs is translational coupling.
132                      Most of the same-strand overlapping gene pairs show at least a tenfold differenc
133 The nearly universal, abundant occurrence of overlapping gene pairs suggests that tight translational
134 ion at upstream genes versus reinitiation at overlapping gene pairs.
135 it highly variable, fractions of co-directed overlapping gene pairs.
136                 Moreover, when percentage of overlapping genes (POG) was used as a cross-platform con
137                                              Overlapping genes pose an evolutionary dilemma as one DN
138 ntly memorized into domains of progressively overlapping gene products.
139 API2/MALT1 proteins activate both unique and overlapping gene programs in cells.
140 lysis of four genomic studies and identified overlapping gene regions associated with virulence, sugg
141 ong genes and species and were lower in some overlapping gene regions, all fell within the range of t
142                                     Ofthe 50 overlapping genes regulated by T0901317 and WY, all but
143 omprehensive description of differential and overlapping gene regulation by the transcriptional regul
144 ation and transcriptome analyses demonstrate overlapping gene regulatory functions between Oct4 and W
145 ts, we further demonstrate that Ncoa3 shares overlapping gene regulatory functions with Esrrb and coo
146 iRNAs in mammalian tissues; (3) evidence for overlapping gene-regulatory functions by different miRNA
147                    We identified two sets of overlapping genes required for resistance of S.
148                              We identity non-overlapping genes required for T3SS1- and T3SS2-mediated
149                Furthermore, expression of an overlapping gene, Rev-ErbAalpha (RevErb), was found to c
150 3D revealed a probable 5.6-kb operon of four overlapping genes (sapCDEF, with sizes of 1,035, 1,752,
151                                 Extension of overlapping gene segments by PCR is a simple, versatile
152                        Initial PCRs generate overlapping gene segments that are then used as template
153 omosomal recombination between truncated but overlapping gene sequences.
154 ter support the analysis of large and highly overlapping gene set collections, researchers have recen
155                        The presence of a non-overlapping gene set has persisted with successive data
156 tamin D receptor (VDR) regulate distinct but overlapping gene sets in multiple cell types.
157 ith distinct kinetic signatures, converge on overlapping gene sets involved in energy organelle funct
158 nhanced power of RIUT enables it to identify overlapping gene sets leading to identification of certa
159 thway analyses were then performed using the overlapping gene signatures.
160                The system is composed of two overlapping genes, stbD and stbE, which potentially enco
161 nd demonstrated that it possesses an unusual overlapping gene structure.
162 hput RNA-sequencing analysis reveals several overlapping gene targets of HCFC1 and THAP11.
163  tests to infer non-overlapping or partially overlapping genes that are in fact parts of the same gen
164  a diverse group of genes, revealing sets of overlapping genes that may represent a complex network o
165  is a frequently used method for identifying overlapping genes that meet the investigator's research
166 t1 gene expression data revealed a set of 38 overlapping genes that were differentially expressed in
167       About 10% of the genes under study are overlapping genes, the majority of which are different-s
168                                           In overlapping genes, the same DNA sequence codes for two p
169 loy extensive bidirectional transcription of overlapping genes to overcome length constraints on thei
170 pipeline for the computational design of two overlapping genes translated in different reading frames
171 nd mutant viruses lacking the neighboring or overlapping genes UL20, UL21, or UL21.5-UL23 replicated
172 ants, and the functional identities of these overlapping genes were consistent with the observed mito
173                                        Forty overlapping genes were identified; hub genes included CO
174                                 Thousands of overlapping genes were recently identified in the human
175  were identified, and polymorphisms of these overlapping genes were reported to be associated with sc
176  the genome compression caused by the use of overlapping genes (where some nucleotides code for two g
177  is immediately adjacent to or even fused as overlapping genes with a stand-alone endonuclease.
178 st conditions, our method detects functional overlapping genes with higher sensitivity than Firth and
179 e surveyed the germline variants seen in 187 overlapping genes with Mendelian disease associations in
180  disequilibrium within and between genes and overlapping genes with similar annotations, are often no
181 UTS improved the accuracy of quantitation of overlapping genes, with UTS giving the most-accurate res
182  3.2 kb deletion was complemented by the two overlapping genes xisH and xisI.

 
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