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1 ; also known as mountain lions, cougars, and panthers).
2 RT, TIGRFAMs, PIRSF, SUPERFAMILY, Gene3D and PANTHER.
3 , there have been three main improvements to PANTHER.
4 r of pathways associated with subfamilies in PANTHER.
5 based inference, such as that implemented in PANTHER.
6 omain databases include COG, Pfam, SMART and Panther.
7 ations to Gene Ontology (GO) and pathways in PANTHER.
8 ng regions with the annotated human genes in PANTHER.
9 using the multiple axes of classification in PANTHER.
12 how that the D. rerio pigment pattern mutant panther ablates xanthophores in embryos and adults and h
13 erations of admixture, which helped increase panther abundance (> fivefold) and genetic effective pop
16 from the Atlas of Cancer Signalling Network, PANTHER and Reactome databases and review them in terms
17 ic trees of gene families form the basis for PANTHER and these trees are annotated with ontology term
19 Terminal tissues from FeLV-infected Florida panthers and domestic cats had similar exFeLV proviral c
20 es, but FeLV outbreaks in endangered Florida panthers and Iberian lynxes have resulted in mortalities
21 s for SARS-CoV-2 (Cepheid, DiaSorin, Hologic Panther, and Roche Cobas) on a total of 169 nasopharynge
22 ay), and the Hologic Aptima SARS-CoV-2 assay Panther (Aptima SARS-CoV-2 assay) NAAT systems were dete
25 n of classification information available in PANTHER, as well as significant enhancements to the anal
28 t the panther population would fall below 10 panthers by 2010 was 0.098 (0.002-0.332) for the restora
30 lemented in mixOmics were assessed using the PANTHER Classification system for molecular functions, b
31 ons and pathways were investigated using the Panther classification system, and the Fisher exact test
42 ry of over 15 000 gene family trees from the PANTHER database, and are updated on a yearly basis.
43 t analyses for Gene Ontology, KEGG pathways, PANTHER database, and gene set enrichment analysis (DisG
46 ecological disturbances would interact with panther-deer ecology, resulting in the emergence of two
48 e of human site use and flooding on deer and panther detection probability, co-occurrence and diel ac
51 ii) an improved methodology for defining the PANTHER families and subfamilies, and for building the H
52 ogy has been completely refactored, and 6101 PANTHER families have been manually assigned to a Protei
55 tinue to support the distinctness of Florida panthers from other North American puma populations, inc
57 ucleic acid amplification tests (NAATs), the Panther Fusion and BD MAX systems, for detection of GBS
58 a standard run size of 60 specimens/day, the Panther Fusion assay had a longer TFR (2.4 versus 2.0 h)
60 ositive by culture were also detected by the Panther Fusion assay, while 107/108 (99.1%) were detecte
61 tation for SARS-CoV-2 and to the FDA-cleared Panther Fusion Flu A/B/RSV assay results for all non-SAR
62 dom- access investigational use only Hologic Panther Fusion Gastrointestinal (GI) Bacterial assay and
64 omparator method, which included the Hologic Panther Fusion GBS test combined with bacterial culture,
65 cid amplification tests (NAATs), the Hologic Panther Fusion GBS, Luminex Aries GBS, and Cepheid Xpert
67 f the investigational use only (IUO) Hologic Panther Fusion GI Bacterial and Expanded Bacterial assay
68 on Gastrointestinal (GI) Bacterial assay and Panther Fusion GI Expanded Bacterial assay perform compa
69 two LDTs for FluA virus strain typing on the Panther Fusion instrument, enabling side-by-side testing
70 e RT-PCR H5 single-plex assay on the Hologic Panther Fusion Open Access platform for reflex testing o
71 tion of a real-time PCR assay on the Hologic Panther Fusion Open Access system for the detection of m
73 Cepheid Xpert Xpress SARS-CoV-2 and Hologic Panther Fusion real-time RT-PCR assays for detection of
74 assay would be a valuable complement to the Panther Fusion respiratory menu given the performance of
76 compared three of these assays, the Hologic Panther Fusion SARS-CoV-2 assay (Fusion), the Hologic Ap
77 94% for the CDC 2019-nCoV real-time RT-PCR, Panther Fusion SARS-CoV-2 assay, and Cobas SARS-CoV-2 te
79 dy evaluated the clinical performance of the Panther Fusion SARS-CoV-2/Flu A/B/RSV assay in nasophary
81 cal performance was established by comparing Panther Fusion SARS-CoV-2/Flu assay results to a three-m
87 zers (Roche Cobas, Abbott m2000, and Hologic Panther Fusion) and 167 to 511 copies/ml for sample-to-a
89 two high-throughput systems: cobas 6800 and Panther Fusion, and their associated RT-PCR assays, with
92 fications, we have developed an entirely new PANTHER GO-slim, containing over four times as many Gene
95 ts within one degree of capture locations of panther grouper from the United States Geological Survey
97 el and is indicated as the area in which the panther grouper is most likely to become established.
99 (Pterois volitans/miles), which, as for the panther grouper, is assumed to have been introduced to t
103 a member of the InterPro Consortium, and the PANTHER hidden markov Models (HMMs) are distributed as p
104 iii) resources for scoring sequences against PANTHER HMMs both over the web and locally; and (iv) a n
105 there have been several new developments to PANTHER: (i) improved phylogenetic trees, explicitly rep
106 nitiative - using the estimated abundance of panthers in 1995, the year genetic restoration was initi
108 h idiopathic pulmonary fibrosis (IPF) in the PANTHER-IPF (Evaluating the Effectiveness of Prednisone,
109 was measured from available DNA samples from PANTHER-IPF (interim analysis, n = 79; final analysis, n
110 n immunosuppression and LTL for the combined PANTHER-IPF and ACE-IPF clinical trials (P(interaction)
111 ain Results: Of the subjects enrolled in the PANTHER-IPF and ACE-IPF, 62% (49/79) and 56% (28/50) had
122 Analysis THrough Evolutionary Relationships (PANTHER) is a comprehensive software system for inferrin
123 ion, including cross-validated prediction of PANTHER LDOs and evaluation of evolutionary divergence a
126 THER is composed of two main components: the PANTHER library (PANTHER/LIB) and the PANTHER index (PAN
129 methods (SIFT, PolyPhen2, SNPs&GO, PhD-SNP, PANTHER, Mutation Assessor, MutPred, Condel and CAROL) a
130 an genes (as well as a few other organisms), PANTHER now also supports enrichment analysis using path
132 of this restoration experiment and show that panther numbers increased threefold, genetic heterozygos
137 multiple, diverse source databases: Gene3D, PANTHER, Pfam, PIRSF, PRINTS, ProDom, PROSITE, SMART, SU
138 ished prediction tools: MAPP, nsSNPAnalyzer, PANTHER, PhD-SNP, PolyPhen-1, PolyPhen-2, SIFT and SNAP.
139 ationTaster, Mutation Assessor, FATHMM, LRT, PANTHER, PhD-SNP, SNAP, SNPs&GO and MutPred), 3 conserva
141 esponsible for the substantial growth of the panther population that would otherwise have been declin
142 density-dependence, the probability that the panther population would fall below 10 panthers by 2010
143 cenario, providing further evidence that the panther population would have faced a substantially high
147 with ontology terms (Gene Ontology (GO) and PANTHER protein class), and sequences are assigned to PA
153 cs and persistence of the endangered Florida panther Puma concolor coryi population and evaluated the
154 movement patterns of the endangered Florida panther (Puma concolor coryi) and to discern factors inf
155 d over 40 years from 1192 endangered Florida panthers (Puma concolor coryi) across nine generations,
156 an activity, on interactions between Florida panthers (Puma concolor coryi) and white-tailed deer (Od
157 pecific PLVA transmission has occurred among panthers (Puma concolor coryi) in Florida following the
160 We used the Gene Ontology, Ingenuity, KEGG, Panther, Reactome, and Biocarta databases for gene set e
164 V in plasma specimens on the fully automated Panther system and that the results were comparable to t
165 d CVL specimens and that the fully automated Panther system has all the necessary features suitable f
166 Marlborough, MA) performed on the automated Panther system is a rapid and high-throughput method for
167 ter-labeled probe chemistry on the automated Panther system to directly amplify and detect two separa
168 automated format and high throughput of the Panther system, make this system well suited for reliabl
174 ences to the reference phylogenetic trees in PANTHER, to infer evolutionary context as well as fine-g
175 vailable services for programmatic access to PANTHER tools and data via application programming inter
182 e enrichment analysis tools available on the PANTHER website: users can now analyze over 900 differen
183 movement patterns of male and female Florida panthers were a consequence of sex-specific differences
184 protein family boundaries, and have aligned PANTHER with the MEROPS resource for protease and protea