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1 e a conjecture of Chen, Jia, and Wang on the partition function.
2  toehold exchange energy measurement and the partition function.
3 conformational space based on the ensemble's partition function.
4 s for DNA sequences follow directly from the partition function.
5 that are used to calculate the corresponding partition function.
6  classical spectrum and consider the quantum partition function.
7 the same types of general congruences as the partition function.
8  and physical convergence of the open-system partition function.
9  probabilities, mean, standard deviation and partition function.
10 rmula: see text] are MacMahon's well-studied partition functions.
11  architectures under the common framework of partition functions.
12 ns can also be described by use of semigrand partition functions.
13 es are the solutions to special equations in partition functions.
14 hality to plasmid-free segregants and active partitioning functions.
15                         Using an accelerated partition function algorithm along with chosen parameter
16                              In this work, a partition function algorithm is introduced that allows t
17                       However, the classical partition function algorithm scales cubically with seque
18 hermore, an evaluation of the microcanonical partition functions allowed for a quantification of the
19 gorithm, LinearPartition, to approximate the partition function and base-pairing probabilities, which
20 hm which additionally computes the Boltzmann partition function and outputs Boltzmann pair probabilit
21 ach to derive analytical expressions for the partition function and the average degree of binding for
22 ase pair probabilities were predicted with a partition function and the positive predictive value of
23        Using the transfer matrix method, the partition function and the subsequent statistical proper
24 ulate anharmonic frequencies for vibrational partition functions and (ii) a "hybrid MP2:(PBE+D2)+Delt
25 itochondria and Eukarya, as predicted by the partition function approach for RNA folding introduced b
26 parS leading to partition dysfunction and to partition function are similar.
27                                              Partition functions are ubiquitous in physics: They are
28                     The DIA approximates the partition function as a combinatorial sum of products kn
29 ll coincides with the Newton polytope of the partition function as a polynomial in energy parameters.
30 the classical minimum free energy methods to partition function-based methods that account for foldin
31 ined its ancestral secondary plastid and has partitioned functions between this plastid and the klept
32 d in the experiments have the same classical partition functions, but different quantum spectra.
33                                          The partition function calculates the basepair opening proba
34                            For this study, a partition function calculation that considers all possib
35 space and the conformations included in each partition function calculation to only the most energeti
36 structures are rigorously calculated using a partition function calculation.
37 us to implement an end-to-end differentiable partition function calculation.
38                                          The partition function computation uses atlases of interface
39                                            A partition function defined the contribution of all heat-
40 ostsegregational cell killing and a possible partitioning function encoded by the intact 3.2-kb par r
41 pecific thermodynamics, it is shown that the partition function for ligand binding to a two-dimension
42 meters from our paired Ising fit, we built a partition function for the seven-repeat array.
43       The K* algorithm provably approximates partition functions for a set of states (e.g., protein,
44 verse ensembles to identify the most diverse partition functions for Boltzmann stochastic sampling.
45 aluating approximately 100,000 rovibrational partition functions for the low-energy isomers of the va
46                         Using the calculated partition functions for the monomer and dimer, and takin
47 ly with characteristics of the thermodynamic partition function, for the substrate-free enzymes.
48      In statistical mechanics, the canonical partition function [Formula: see text] can be used to co
49 ithm (DIA) - for approximating the canonical partition function [Formula: see text] in [Formula: see
50            More generally, for MacMahonesque partition functions [Formula: see text] we prove that th
51 function from algebraic graph theory and the partition function from statistical mechanics, and explo
52 in terms of prime cycle frequencies) and the partition function from statistical mechanics.
53 ujan-type congruences for the Andrews spt(n) partition function have been found for prime moduli 5 </
54                                    Semigrand partition functions have the advantage of containing all
55 ded at least one naturally occurring plasmid partition function in our expression plasmids, which eli
56                          Additionally, using partition functions in a fluorescence resonance energy t
57  conditional probabilities computed with the partition functions in a recursive sampling process, the
58             At intermediate temperatures the partition function includes a bimodal distribution.
59                                        Their partition function includes a sharp unimodal distributio
60 proteins H-NS, StpA and MukB, in variants of partitioning functions including the centromere-like seq
61 replaced by a 1.4 kbp segment with predicted partitioning functions, including plasmid-like parA and
62 ate unfolding transition predicted from this partition function is in excellent agreement with the ex
63   Prediction of hybridization affinity using partition functions is now available in the RNAstructure
64 tropy loss function, together with empirical partition functions, is proposed for measuring the accur
65 lf-assembly with knowledge of the underlying partition function landscape in a step towards quantitat
66 of organisms (population), the corresponding partition function (macroscopic counterpart of fitness),
67 t maximal expected accuracy alignments using partition function match probabilities (implemented in P
68     We demonstrate, for the first time, that partition function match probabilities used for expected
69                                          The partition function methodology is one way of estimating
70 and proved some striking congruences for the partition function modulo powers of 5, 7, and 11.
71 ate that there are multiple sequences in the partition function of a fixed structure, each having nea
72 ts in finding the analytical solution of the partition function of a lattice once the interaction geo
73                         The MTM utilizes the partition function of a protein calculated from molecula
74 omputational complexity of approximating the partition function of a q-state spin system with an exte
75 amic programming algorithm for computing the partition function of an RNA sequence.
76 n a network, which in turn is related to the partition function of Bose-Einstein statistics.
77                               We compute the partition function of sequences with respect to a fixed
78                                          The partition function of the C-terminal states is a broad u
79 on implemented in a computer code solves the partition function of the lattice by operating on the co
80 y and by using the technique of the factored partition function of the simplified perturbed hard-chai
81 simulation method is then used to sample the partition functions of both the monomer and dimer forms
82 actor, which is essentially the ratio of the partition functions of circular and linear forms, are ev
83 ogramming approach to statistical mechanical partition functions of foldamer chain molecules.
84 ep of the algorithm computes the equilibrium partition functions of RNA secondary structures with rec
85 lution is expressed as the ratio between the partition functions of the protein in the two phases.
86 ment problem based on the computation of the partition function over all canonical pairwise alignment
87 ory overhead of differentiating the expected partition function over all RNA sequences, the existing
88  where obtaining the TP requires calculating partition functions over the future part in the presence
89           Previously, it has been shown that partition function posterior probabilities attuned to lo
90 d accuracy multiple sequence alignments from partition function posterior probabilities.
91                             The seven-repeat partition function predicts a native state in which thre
92                          Manipulation of the partition function (Q) of the redox center CuA from cyto
93      These are combined with multistructural partition functions (Q(MS-T)) to obtain direct dynamics
94     Locus qsopA alone appears to fulfill the partitioning function; QsopA represses its own promoter
95                                  The reduced partition function ratio of CO(2)(m)(B) structure in goe
96 llator approximation to the isotopic reduced partition-function ratio (208)Pb(32)S/(207)Pb(32)S.
97 e nuclear field effect on the total isotopic partition-function ratio from its shift of the electroni
98                                   Calculated partition function ratios for tetrahedrally coordinated
99                                     Isotopic partition-function ratios (IPFRs) computed for transitio
100 nt leads to equivalency of the corresponding partition functions, resulting in a one-step renormaliza
101 psilon-approximation for a particular set of partition functions takes a prohibitive amount of time a
102                            The zeroes of the partition function tend to distribute on a slightly dist
103           By calculating the grand-canonical partition function term by term, we show that small nonp
104 everal kilobasepairs by calculating the full partition function that describes this three-state coexi
105 ng including deep learning as it enables the partition function to be incorporated directly into any
106 by Lee and Yang, analytically continuing the partition function to the complex plane allows us to obt
107 n of microscopic binding models derived from partition functions to differentiate between Ca2+ and ph
108   This can be associated with the electronic partition function (unoccupied density of states (DOS)),
109  3.2-kb region, indicating that the putative partitioning function was largely responsible for RK2 ma
110                                      Plasmid partitioning function was located ca. 36 kb from the put
111  changes in the capsid free-energy landscape partition function when an interaction is removed.
112 ll as giving expressions for the entropy and partition function, which are notoriously difficult quan
113 can be reproduced using a more sophisticated partition function, which couples DOFs that are most sen
114 h density functional theory to calculate the partition functions, which in turn are used to estimate
115 theory, we find that conventional models for partition functions, which rely on uncoupled degrees of
116 e RNAdualPF, which rapidly computes the dual partition function Z ( *) and samples sequences having l
117     Moreover, since we also compute the dual partition function Z ( *)(k) over all sequences having G
118 e program RNAdualPF, which computes the dual partition function Z ( *), defined as the sum of Boltzma
119                    Here, we show how to find partition function zeros on noisy intermediate-scale tra

 
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