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1 e (GlcNAc-MurNAc(pentapeptide)-GlcNAc-MurNAc(pentapeptide)).
2 pentapeptide and 1,6-anhydro-N-acetylmuramyl pentapeptide).
3 pproximately P, and is inhibited by the PhrC pentapeptide.
4 bly serve as a flexible tether for the NWETF pentapeptide.
5 y about half of the deuteriums of the parent pentapeptide.
6 tion and biogenesis of a cyclical AgrD-type, pentapeptide.
7 constant (Kd) of 11 microM observed with the pentapeptide.
8 inct from, its natural substrate, UDP-MurNAc-pentapeptide.
9 hosphate moiety of C35-P on bound UDP-MurNAc-pentapeptide.
10 onformational change when binding UDP-MurNAc-pentapeptide.
11 precursor UDP-N-acetylmuramic acid (MurNAc)-pentapeptide.
12 , its DNA operator, and repressor UDP-MurNAc-pentapeptide.
13 boxypeptidase, which hydrolyzes both di- and pentapeptide.
14 NRPSs is L-pHPG-L-Arg-D-pHPG-L-Ser-L-pHPG, a pentapeptide.
15 , in contrast to the other characterized Phr pentapeptides.
16 and AmiB either have no preference or prefer pentapeptides.
17 l wall proteins with tandemly repeated PPVYK pentapeptides.
18 nd tripeptides, and Fmoc-modified tetra- and pentapeptides.
19 vs. 71% of glutathione and up to 93% for the pentapeptides.
20 predict reliably the sensing ability of the pentapeptides.
22 alasin D, zygosporin E, hirsutatin A, cyclic pentapeptides #1-2 and xylariotide A were also character
26 involve the synthesis of UDP-n-acetylmuramyl pentapeptide, a key precursor molecule required for the
27 ically reacted with the lysine of UDP-MurNAc-pentapeptide, a peptidoglycan precursor used by the amin
28 phanamide (NATA), a tripeptide: AWA, and six pentapeptides: AAWAA, WVSGT, GYWHE, HEWTV, EAWQE, and DY
29 derived from the partitioning of host-guest pentapeptides (Ac-WLXLL) into the interfaces of phosphat
30 ide side chains of muropeptide subunits, and pentapeptides act as donors for cross-linking adjacent s
36 l-valyl-N-methylvalyl-prolyl-proline (P5), a pentapeptide also present in dolastatin 15 and cemadotin
37 transition states to form native tetra- and pentapeptide analogues was studied on S-acylcysteine pep
38 cetylglucosamine-1,6-anhydro-N-acetylmuramyl pentapeptide and 1,6-anhydro-N-acetylmuramyl pentapeptid
39 ounds increased, to a maximum of 95% for the pentapeptide and 56%, 57% and 45% for the dipeptide, rib
40 /M22K) exhibits enhanced HX within the CXXCH pentapeptide and a modest increase in Em (by 30 mV).
41 spectral signatures begin to converge at the pentapeptide and become almost the same for the octa- an
42 agments concomitantly with the appearance of pentapeptide and dipeptide peptidoglycan fragments and h
44 ence enhancement using dansylated UDP-MurNAc-pentapeptide and heptaprenyl phosphate (C35-P, short-cha
46 rsor, Lipid I, from UDP-N-acetylmuramic acid-pentapeptide and the lipid carrier, undecaprenol phospha
47 ould be inhibited by an octanoylated ghrelin pentapeptide, and its potency was enhanced 45-fold when
48 the GLP-1 receptor might be mediated by the pentapeptide, and the previously reported nonapeptide (F
49 APS approach is first applied to the alanine-pentapeptide, and the results are tested against an expl
50 assembly line reconstitution of pacidamycin pentapeptide antibiotic scaffolds, bridging the primary
51 Pacidamycins are a family of uridyl tetra/pentapeptide antibiotics that act on the translocase Mra
52 Pacidamycins are a family of uridyl tetra/pentapeptide antibiotics with antipseudomonal activities
54 mixture in which the muramyl residue and the pentapeptide are modified singly and in combination.
59 flippases thought to shield the disaccharide-pentapeptide as it crosses the hydrophobic core of the m
60 taxis by Escherichia coli require a specific pentapeptide at the chemoreceptor carboxyl terminus.
61 additional amino acids extending beyond the pentapeptide at their carboxyl termini and assayed methy
62 -borne pentapeptide implied linker (i) makes pentapeptide available to modification enzymes by separa
64 to afford peptidic derivatives for exploring pentapeptide-based hydrogels as potential biomaterials.
65 lic peptides that fold in water to present a pentapeptide beta-strand along one edge; the other edge
68 ganisms having MCPs that contain and/or lack pentapeptide-binding motifs identified key similarities
69 been inserted at positions i and i+3 of the pentapeptide Boc-(R)-Aic(NN)-(Ala)2-(R)-Aic(NN)-Ala-OMe
70 eight substrates, based on variation of the pentapeptide Boc-l-Ala-gamma-d-Glu-l-Lys-d-Ala-d-Ala, we
73 oteinogenic amino acids, proteolysis of this pentapeptide by trypsin yields two fragments from cleava
74 impact of properties of the Cys-X-X-Cys-His pentapeptide c-heme attachment (CXXCH) motif on heme red
76 binds the terminal d-alanine residue of the pentapeptide chain of bacterial peptidoglycan, resulting
78 nformation to the RGD sequence of the cyclic pentapeptide cilengitide when bound to integrin alpha(V)
81 e-containing muramyl tetra- (compound 5) and pentapeptide (compound 6) showed that these compounds ha
83 ompounds that contained only a stem peptide (pentapeptide, compound 1) and (DAP-PP, compound 2) as we
85 ic anti-dsDNA antibodies also recognizes the pentapeptide consensus sequence D/E W D/E Y S/G (DWEYS)
86 glycine generating enzyme (FGE) recognizes a pentapeptide consensus sequence, CxPxR, and it specifica
87 GOAT also transferred [(3)H]octanoyl to a pentapeptide containing only the N-terminal five amino a
88 and applied in the preparation of cyclic aza-pentapeptides containing the RGD (Arg-Gly-Asp) sequence.
91 The largest response was obtained for the pentapeptides Cys-Ile-His-Asn-Pro and Cys-Ile-Gln-Pro-Va
92 ed a high-fat diet was accomplished with the pentapeptide cysteine-arginine-glutamic acid-lysine-alan
93 ce of two distinct classes of CheR proteins: pentapeptide-dependent and pentapeptide-independent meth
96 eratures, and that interaction with an MEEVD pentapeptide derived from Hsp90 stabilises a folded stru
97 vercrowding via the release of a fratricidal pentapeptide derived from the metabolic enzyme glucose-6
98 R, a transcription regulator that requires a pentapeptide derived from the papR gene product for bind
99 lic beta-sheet components 1a and 1b comprise pentapeptides derived from the N- and C-terminal regions
100 produce a fusion containing a zwitterionic, pentapeptide designed from Bax inhibiting peptide (Ku70)
103 resulting naphthylalanine-substituted cyclic pentapeptides displayed variable mixed-efficacy profiles
104 t the concomitant binding of both UDP-MurNAc-pentapeptide-DNS and C35-P to the enzyme is required bef
106 We have also employed a synthetic sulfated pentapeptide (DY(SO(3)(-))DY(SO(3)(-))Q, designated D5Q1
111 for the approximately d-Ala-d-Ala moiety of pentapeptides engaged in cross-links in the bacterial ce
112 nstrated that an impermeable fluoresceinated pentapeptide enters the cytoplasm and nucleus of COS 7 c
114 inidin concentration (P < 0.05), whereas the pentapeptide epitopes hydrolysis was influenced only by
115 luten peptides (synthetic 33-mer peptide and pentapeptide epitopes) under static simulated gastrointe
116 DGAT1 and DGAT2 contain a similar C-terminal pentapeptide ER retrieval motif, this motif alone is not
117 t of substrates: vitamin K hydroquinone, the pentapeptide FLEEL, and NaHCO(3), on the stability of th
119 ed on the His276-Pro277-Glu278-Val279-Tyr280 pentapeptide formed by the His-Tyr covalent linkage.
120 roposed to competitively displace UDP-MurNAc-pentapeptide from AmpR and convert it into an activator
125 ne (P), fluorene (F), or naphthalene (N)) to pentapeptides GAGAS (1), GVPVP (2), VPGVG (3), VTEEI (4)
126 pound 40 was 97% orally bioavailable, larger pentapeptides generally had low oral bioavailability.
131 tative catalytic triad (SDH) and a conserved pentapeptide (GXSXG) surrounding the nucleophilic serine
132 y stereochemistry, since five epimers of the pentapeptide, H2N-Gly-Leu-Ser-Phe-Ala-OH (GLSFA) all dis
134 -2, it was observed that the breakage of the pentapeptide has probably been taken place through H-bon
135 e that employs native chemical ligation of a pentapeptide (HCDLP) to recombinant S. coelicolor NiSOD
139 runcations on CheR binding to receptor-borne pentapeptide implied linker (i) makes pentapeptide avail
140 on of the third position residue in the stem pentapeptide in S. aureus MurE, the structure shows that
143 DD-carboxypeptidase mutant that accumulates pentapeptides in its peptidoglycan, allowing us to visua
145 namics (MD) simulations of Gly-Gly-X-Gly-Gly pentapeptides in water at 298 K with exhaustive sampling
147 ively recent event in evolution and that the pentapeptide-independent methylation system is more comm
153 Ab) against LR (LR-Ab) or YIGSR, a synthetic pentapeptide inhibitor for LR, significantly attenuated
159 -Glc PPase enzyme, we studied the effects of pentapeptide insertions at different positions in the en
160 he two classes of mutant HrpA proteins carry pentapeptide insertions in discrete regions, which are i
161 unctional HrpA derivatives that carry random pentapeptide insertions or single amino acid mutations,
169 trol of the third position amino acid in the pentapeptide is crucial to maintain the fidelity of late
170 efensins, the third position of the lipid II pentapeptide is essential for effective copsin binding.
174 on of mature cell wall precursor, UDP-MurNAc-pentapeptide, is inhibited by region 3.2 of sigma subuni
178 an from the dacA-1 mutant contained elevated pentapeptide levels in standard and low salt media, and
180 Based on protein folding considerations, a pentapeptide ligand, CALNN, which converts citrate-stabi
181 peptide (Park's nucleotide) to prenyl-MurNAc-pentapeptide (lipid I), the first membrane-anchored pept
182 observation suggests that 1,6-anhydroMurNAc-pentapeptide may convert AmpR into an activator of ampC
183 the extreme carboxyl terminus important for pentapeptide-mediated enhancement of adaptational modifi
184 l three carboxyl-terminal extensions reduced pentapeptide-mediated enhancement of rates of adaptation
185 ale liposomal formulation (NLF) contains the pentapeptide mimic 1,4-Bis (9-O dihydroquinidinyl) phtha
186 nce on Asp isomerization was evaluated using pentapeptide models of the MAbs, which included the labi
187 of a larger-sized peptidoglycan monomer, the pentapeptide monomer, and an increased release of peptid
189 sp2 homologues identified a highly conserved pentapeptide motif (Gly-X-Ser(362)-X-Gly) typical of mos
190 cognate 71 kDa protein (HSC70) recognizing a pentapeptide motif (KFERQ-like motif) in the protein seq
192 creasing the binding affinity of a consensus pentapeptide motif toward the beta subunit of Escherichi
193 posed of tandemly repeated Pro-Hyp-Val-X-Lys pentapeptide motifs, is found primarily in the Leguminos
194 hereby producing cells with higher levels of pentapeptides, mutants carrying only AmiC produced a hig
196 ecaprenyl pyrophosphate-N-acetylmuramic acid(pentapeptide)-N-acetylglucosamine (lipid II), which is r
197 re as determined by NMR of the 2-kDa NAG-NAM(pentapeptide)-NAG-NAM(pentapeptide) synthetic fragment o
198 lycan substrate fragment containing the full pentapeptide, NAM-(L-Ala-D-isoGlu-L-Lys-D-Ala-D-Ala).
199 but not, or only marginally, the UDP-MurNAc pentapeptide nucleotide precursor as acceptor substrates
200 gate the competence and sporulation factor-a pentapeptide of amino acid sequence ERGMT-within intact
201 add the cross-bridge amino acids to the stem pentapeptide of cell wall precursors, and vanK is essent
202 otensin(8-13), an analogue of the C-terminal pentapeptide of neuropeptide Y, and a neuropeptide FF an
205 ct ions for a series of histidine-containing pentapeptides of both non-tryptic (AAHAL, AHAAL, AHADL,
206 of the tetrapeptide intermediate yielding a pentapeptide on the thio-templated nonribosomal peptide
207 ow only three deuteriums are attached on the pentapeptide, one on each of the amide nitrogens of Y, I
208 catalyzes the transformation from UDP-MurNAc-pentapeptide (Park's nucleotide) to prenyl-MurNAc-pentap
210 n of lipid II, the undecaprenyl-disaccharide pentapeptide peptidoglycan precursor, remains mysterious
211 F (Spo0F approximately P), and its inhibitor pentapeptide, PhrA, was analyzed in part by generating c
212 edicted to encode five modules pointing to a pentapeptide precursor in nocardicin A biosynthesis, unl
214 ng the AmpR.DNA tetramer bound to UDP-MurNAc-pentapeptide predicts that the UDP-MurNAc moiety of the
215 e nonnaturally occurring D form of the DWEYS pentapeptide prevents these antibodies from depositing i
217 Their activity is inhibited by specific Phr pentapeptides produced from the product of phr genes thr
218 stal structure of Cbl(TKB) in complex with a pentapeptide, pYTPEP, revealed that the PEP region adopt
222 NA foci and translation of repeat-associated pentapeptide repeat (PPR) proteins, consistent with obse
223 ss of synthetic repeat proteins based on the pentapeptide repeat family of beta-solenoid proteins.
224 The expression of MfpA, a member of the pentapeptide repeat family of proteins from Mycobacteriu
228 uberculosis MfpA is a founding member of the pentapeptide repeat protein (PRP) family that confers re
232 At2g44920 from Arabidopsis thaliana is a pentapeptide-repeat protein (PRP) composed of 25 repeats
233 s two domains, a beta-helix domain formed by pentapeptide repeats and a bilobed catalytic domain remi
236 effector-binding domain bound to UDP-MurNAc-pentapeptide revealed that the terminal D-Ala-D-Ala moti
237 c) consists of a heme covalently linked to a pentapeptide segment (Cys-X-X-Cys-His), which provides a
238 e investigated the effects of relamorelin (a pentapeptide-selective agonist of the ghrelin receptor t
239 action between the CheR beta-subdomain and a pentapeptide sequence (NWETF or NWESF) at the C-terminus
240 both substrate sites and a carboxyl-terminal pentapeptide sequence carried by certain receptors.
241 ndance receptors carry the carboxyl-terminal pentapeptide sequence NWETF that enhances adaptational c
242 by either enzyme is dependent on a conserved pentapeptide sequence, NWETF or NWESF, present at the ex
243 investigated the relative importance of each pentapeptide side chain for the two enhancing interactio
244 PBP 5 removes the terminal D-alanine from pentapeptide side chains of muropeptide subunits, and pe
245 ts are recognized by SrtC proteins through a pentapeptide sorting signal, and while previous studies
246 We investigated the molecular basis for pentapeptide specificity using peptide analog inhibitors
247 es: the well-known peptidoglycan D-Ala-D-Ala pentapeptide stem terminus and the pentaglycyl bridging
250 anied by a dramatic accumulation of unlinked pentapeptide stems with no change in the tetrapeptide po
252 a-turn conformation that develops within the pentapeptide structural repeats above the phase transiti
253 alization of PBP2 was also observed when its pentapeptide substrate was eliminated by addition of d-c
255 ncoded library (130,321 compounds) of lysine pentapeptide substrates of TGase, synthesized using the
257 hemical assays, caspase-2 uniquely prefers a pentapeptide (such as VDVAD) rather than a tetrapeptide,
259 he(7)/D-Nal(2')(7)-Arg(8)-Trp(9)-Lys(10)-NH2 pentapeptide template lead to nanomolar range and select
260 ibe truncation and SAR studies to identify a pentapeptide that binds Cbl tyrosine kinase binding doma
264 are different but share a carboxyl-terminal pentapeptide that enhances adaptational covalent modific
265 The PG building block is a disaccharide-pentapeptide that is synthesized as a lipid-linked precu
266 undecaprenyl diphosphate and a disaccharide-pentapeptide that PG-synthesizing enzymes use to build t
268 tracellular death factor is a quorum-sensing pentapeptide that relays cell density information to an
269 the nonapeptide bradykinin and of two globin pentapeptides that are potential in vivo substrates.
270 cer of AmpC, the quantities of both the stem pentapeptide (the substrate for the dd-carboxypeptidase
272 s have been developed to synthesize tri- and pentapeptide thioesters containing one or more p-(hydrox
273 f excess Q7, APN quantitatively converts the pentapeptides Thr-Gly-Ala-X-Met into the dipeptides X-Me
274 f the peptidoglycan precursor phospho-MurNAc-pentapeptide to the lipid carrier undecaprenyl phosphate
275 by comparing the fragments generated from a pentapeptide to those obtained on a commercial tandem ma
277 ne bound and soluble forms of PBP5 converted pentapeptides to tetrapeptides in vitro and in vivo, and
278 , aromatic-aromatic interactions promote the pentapeptides transform from alpha-helix to beta-sheet c
281 ecific inhibitor of MraY, the phospho-MurNAc-pentapeptide translocase that catalyzes the synthesis of
284 e nanomolar inhibitors of Mtb phospho-MurNAc-pentapeptide translocase, the enzyme responsible for the
285 nd VanY acting on dipeptide (D-Ala-D-Ala) or pentapeptide (UDP-MurNac-L-Ala-D-Glu-L-Lys-D-Ala-D-Ala),
286 idoglycan precursor UDP-N-acetylmuramic acid-pentapeptide (UDP-MurNAc-pentapeptide) in the cytoplasm.
288 e macrocyclic beta-sheet peptides comprise a pentapeptide "upper" strand, two delta-linked ornithine
290 pH-dependent partitioning of the host-guest pentapeptide variants AcWL-X-LL-NH(2) and WL-X-LL-NH(2)
291 of suitably functionalized tri-, tetra- and pentapeptides via Suzuki-Miyaura cross-coupling has been
293 or epoxidation activity when the small FLEEL pentapeptide was used as a substrate, suggesting that N-
294 ons of DYDYQ, whereas high concentrations of pentapeptide were required to inhibit cleavage of rP2-II
295 ved when Y* was generated by photolysis in a pentapeptide, which matched the primary sequence surroun
296 tle activity against muropeptides containing pentapeptides, which typically characterize newly synthe
297 owed that the enhanced binding observed with pentapeptides with carboxyl-terminal tyrosine, compared
298 e length of their peptides (tri-, tetra-, or pentapeptides with or without mono- or dipeptide branch)
299 MOR and DOR, we have synthesized a series of pentapeptides with the goal of developing a MOR agonist/
300 -Ala-Trp-Ala-Ala-amide (AAWAA), and the five pentapeptides with the same sequence as the Trp substitu