ライフサイエンスコーパス: phylogenetically

1 sting of 232 Laccaria specimens was analyzed phylogenetically.

2 omplex (cc11), ET-15, and clustered together phylogenetically.

3 re generated by deep sequencing and analyzed phylogenetically.

4 om Devonian fishes, both morphologically and phylogenetically.

5 bly the most fundamental ontogenetically and phylogenetically.

6 spanning at least 400 million years, remains phylogenetically ambiguous due to the lack of fossils, m

7 The phylogenetically ancient neuropeptide oxytocin has been

8 Here, we decrypt a new, independent, phylogenetically ancient Torix Rickettsia endosymbiont f

9 and third-wave viruses remain closely linked phylogenetically and antigenically, even subtle molecula

10 Hxt11, Hxt13, Hxt15, Hxt16 and Hxt17 are phylogenetically and functionally distinct from known po

11 encing thermogenic hydrocarbon inputs harbor phylogenetically and functionally diverse communities po

12 Fungi are phylogenetically and functionally diverse ubiquitous com

13 study in microbiology: they are genomically, phylogenetically and functionally diverse yet a distinct

14 The enteric microbiota is also phylogenetically and functionally simple relative to the

15 hy, 100% identical plasmids were detected in phylogenetically and geographically distant bacteria, re

16 me constructed using genome sequences of 725 phylogenetically and geographically representative acces

17 en the interior and exterior environments of phylogenetically and metabolically diverse microorganism

18 antagonism should mostly be prevalent among phylogenetically and metabolically similar species.

19 acterize the natural bacterial microbiome of phylogenetically and morphologically diverse social amoe

20 , DNA sequence; (ii) precise mechanisms vary phylogenetically and operationally; and (iii) epigenetic

21 on genomic analyses of 92 genomes from eight phylogenetically and reproductively isolated lineages of

22 Plants produce phylogenetically and spatially restricted, as well as st

23 g onset of spring and that their response is phylogenetically and spatially structured.

24 CS converter gene families and identified a phylogenetically and structurally distinctive monophyly

25 We find that VM-IAPs cluster together phylogenetically and that this is linked to differential

26 rpin resolution, representing a link between phylogenetically, and mechanistically different recombin

27 But, to achieve this, phylogenetically appropriate comparisons of genomes of f

28 lized by a network of interactions conserved phylogenetically, as we demonstrated in hDAT by Rosetta

29 Using a phylogenetically aware holdout method, we demonstrate th

30 Our results confirm that phylogenetically basal attine farming has been very succ

31 in development in an ontogenetic series of a phylogenetically basal chondrichthyan, the elephant shar

32 ions of so-called acanthothoracids, the most phylogenetically basal jawed vertebrates with teeth, bel

33 ontrolled by corticosteroid signaling in the phylogenetically basal vertebrate group Agnatha, includi

34 MZ and the nature of retinal glia in species phylogenetically bridging amphibians and birds.

35 oxyBAC is phylogenetically classified as a Rieske-type oxygenase (

36 Phylogenetically classifying and optimal construction of

37 human pathogen Mycobacterium franklinii and phylogenetically close to Mycobacterium abscessus.

38 of P. cynomolgi, a macaque-infecting species phylogenetically close to P. vivax, was briefly reported

39 The four phylogenetically closely related ERF102 to ERF105 transc

40 Here, we characterise the four phylogenetically closely related ERF102/ERF5, ERF103/ERF

41 Subsequent data review from phylogenetically closely related species at the clade le

42 The H7N2 viruses were phylogenetically closely related to each other and to vi

43 d member of the Gammaproteobacteria that was phylogenetically closely related to most other abundant

44 terid species, but not in the genomes of the phylogenetically closest bat families, Vespertilionidae

45 in bulk soil and root endosphere tend to be phylogenetically clustered and at the same time exhibit

46 t and low radiative forcing signature) had a phylogenetically clustered community dominated by Acidob

47 taxa in all gut compartments and showed that phylogenetically clustered local regions of bacteria wer

48 lly phylogenetic host specialists, infecting phylogenetically clustered subsets of available avian ho

49 nomic scales, communities were significantly phylogenetically clustered while degree of clustering de

50 1-7,16:F5-36:ST-1157 (cc1157); when analyzed phylogenetically, compared with international cc1157 str

51 metazoan-specific ribonuclease) and RRP12 (a phylogenetically conserved 40S biogenesis factor that ha

52 iochemical studies, we demonstrated that the phylogenetically conserved amino acid residue, F439, was

53 tent to which susceptibility to parasites is phylogenetically conserved among hosts can be revealed b

54 eties, and caste evolution is expected to be phylogenetically conserved and developmentally constrain

55 and find that the N response of bacteria is phylogenetically conserved at each location.

56 Sleep is an essential and phylogenetically conserved behavioral state, but it rema

57 stabilization through ubiquitin binding to a phylogenetically conserved but previously unstudied prot

58 We prioritized 10 of 186 phylogenetically conserved chokepoint enzymes and undert

59 ression data and a genome-wide definition of phylogenetically conserved CHR promoter elements.

60 ents are controlled cell autonomously by the phylogenetically conserved Doublesex homolog dmd-3, whic

61 This phylogenetically conserved nucleus has proved relatively

62 ion is mediated by the exocyst, an essential phylogenetically conserved octameric protein complex.

63 Furthermore, mapping of phylogenetically conserved residues onto the WD40 domain

64 RNA, we undertook a comprehensive search for phylogenetically conserved RNA structures and examined t

65 We provide evidence that the phylogenetically conserved RSE of the carmovirus Turnip

66 RgsA is a phylogenetically conserved small regulatory RNA (sRNA) i

67 pseudoknot fold, despite the absence of the phylogenetically conserved stem P1, rationalizing the po

68 nd the pseudoknot is not compatible with the phylogenetically conserved structure.

69 ting ligands and two cognate receptors--this phylogenetically conserved system serves as a prototype

70 y inputs, as investigated in the lamprey - a phylogenetically conserved vertebrate.

71 analysis of SIRT6 Cys144, which lies in its phylogenetically conserved zinc-associated Cys-X-X-Cys m

72 freshwater bacteria to lake habitats can be phylogenetically conserved, although the levels of conse

73 Trade is strongly phylogenetically conserved, and the hotspots of this tra

74 We demonstrate that a phylogenetically conserved, but previously uncharacteriz

75 n, is controlled by distinct combinations of phylogenetically conserved, class-specific transcription

76 ased regulation of heterologous cells may be phylogenetically conserved.

77 rp1 isoforms through alternative splicing is phylogenetically conserved; strongly suggesting it is bi

78 The medial habenula (MHb) is a phylogenetically-conserved epithalamic structure that is

79 Using wood sampled from a phylogenetically constrained set of 28 Eucalyptus specie

80 uthern Africa, potential rooting depths were phylogenetically constrained, with investment to deep ro

81 Subsequent phylogenetically controlled comparative analyses reveale

82 Using a phylogenetically controlled meta-analysis on over 2200 e

83 Using a phylogenetically controlled meta-analysis, we quantified

84 ffects were not statistically significant in phylogenetically controlled models, we found a weak nega

85 Phylogenetically controlled multivariate models revealed

86 In phylogenetically corrected meta-analyses, we find that e

87 aits among ecological character states using phylogenetically corrected regressions and (c) the accur

88 We identify a phylogenetically correlated substitution, A119S, that pa

89 We identified three synapsin isoforms phylogenetically correlated to that of other invertebrat

90 Phylogenetically, Decemunciger appears to be a sister cl

91 Furthermore, they revive theories of a phylogenetically deeper origin of endochondral bone and

92 We phylogenetically define the major clades of huge phages

93 nd, it is composed of at least eight clearly phylogenetically delineated species; these species are r

94 ansferred DNA, as an explanation of observed phylogenetically determined patterns of restricted recom

95 We performed whole-genome screenings for phylogenetically diagnostic retrotransposon insertions i

96 a feature of this group of viruses infecting phylogenetically disparate hosts, suggesting that this e

97 between individuals and during perturbation, phylogenetically disparate populations can provide beta-

98 aadA5, sul2, dfrA17), in isolates which were phylogenetically dissimilar, suggesting plasmid transmis

99 h represents the kingdom of oomycetes and is phylogenetically distant from fungi, employ the host pla

100 platform that is serologically distinct and phylogenetically distant from VSV.

101 eactivity and potent neutralization toward a phylogenetically distant H5N1 A/Vietnam/1203/2004 (VT04)

102 ciples of visuo-social processing across two phylogenetically distant mammal species.

103 d in all bacterial kingdoms but also in more phylogenetically distant microorganisms such as green mi

104 imited range of plants, we hypothesized that phylogenetically distant plants produce odors that are p

105 on to attract far away, motile cells of even phylogenetically distant species by altering their membr

106 the compatibility of the U6atac 3' end from phylogenetically distant species in a human U6atac backg

107 d export pathways tend to be clade specific, phylogenetically distant species often deploy closely re

108 successfully when combined with enzymes from phylogenetically distant species, endophytic fungi and p

109 region are conserved among SS4 proteins from phylogenetically distant species, such as Arabidopsis an

110 homologous recombination events involving 2 phylogenetically distant strains of E. coli, from an uro

111 r novel approach to predict the lambdamax of phylogenetically distant Sws2 cone opsins.

112 he microbial communities associated with two phylogenetically distant tree species of the same age, d

113 sts common facial expression in species more phylogenetically distant, but sharing a need for common

114 st time, identified the pathways used by two phylogenetically distinct bacteria to degrade three diff

115 les, and the LsrB-type, found in a number of phylogenetically distinct bacterial families.

116 ton using flow cytometry and qPCR assays for phylogenetically distinct Bathycoccus clades BI and BII

117 In the current study, a phylogenetically distinct Bombyx mori 3,4-dihydroxypheny

118 s demonstrated that SPI is associated with a phylogenetically distinct clade of NAG01 Perkinsea.

119 opulation structure revealed the presence of phylogenetically distinct clades consisting of closely r

120 y diverse species that can be divided into 8 phylogenetically distinct clades with clade 5 found to b

121 genetic diversity can be grouped into three phylogenetically distinct clades: Eurasian and American

122 . JSC-1 that is a representative member of a phylogenetically distinct class.

123 tor (OR) genes, which are organized into two phylogenetically distinct classes (class I and class II)

124 Genomic analysis revealed that the virus was phylogenetically distinct from all other influenza A vir

125 ps, the gut bacteria of hunter-gatherers are phylogenetically distinct from both agropastoralists and

126 BaeAB's subunits are phylogenetically distinct from each other and from other

127 -ZdrA encode nearly identical NLRs that are phylogenetically distinct from known immunity-activating

128 Rebounding plasma HIV-1 sequences were phylogenetically distinct from proviral HIV-1 DNA detect

129 GOR is phylogenetically distinct from the monomeric GAP-oxidizi

130 cilitate the establishment of alien invaders phylogenetically distinct from the native flora (competi

131 Here, we report a phylogenetically distinct goose pegivirus (GPgV) that sh

132 sion skewed toward the shoot across multiple phylogenetically distinct groups of NLRs.

133 We identified 984 phylogenetically distinct HIV-1 lineages (molecular HIV

134 A large number of circulating phylogenetically distinct HIV-1C lineages (molecular HIV

135 exemplifying the chemical diversity in this phylogenetically distinct marine red alga.

136 s (MLAV), identified in Rousettus bats, is a phylogenetically distinct member of the family Filovirid

137 ase molybdenum iron (MoFe) proteins from two phylogenetically distinct nitrogenases (Azotobacter vine

138 tructural homologs to the proteins of 20 key phylogenetically distinct nucleocytoplasmic DNA viruses

139 , this ratio varies greatly across HDRs from phylogenetically distinct plants, correlating with isopr

140 ost interactions requires examining multiple phylogenetically distinct Saccharibacteria-host pairs.

141 lyses revealed that the strains comprised 23 phylogenetically distinct species, all but two of which

142 (ExoA), the NF1 strain was determined to be phylogenetically distinct, harboring a unique type 6 sec

143 Fitness effects of point mutations in three phylogenetically divergent IGPS proteins during adaptati

144 representing at least 5108 species and 1123 phylogenetically divergent protein families, their relev

145 The phylogenetically divergent shrew HBVs comprise separate

146 saria associated with veterinary mycoses are phylogenetically diverse and typically can only be ident

147 2017 was driven mainly by the coexistence of phylogenetically diverse antibiotic-resistant lineages,

148 he mechanisms of transcription initiation in phylogenetically diverse bacteria, inspiring this Review

149 In phylogenetically diverse bacteria, the conserved protein

150 Analysing phylogenetically diverse bacteria, we find marked and sy

151 ly over a 1,000,000-fold expression range in phylogenetically diverse Bacteroides species.

152 To date, all phylogenetically diverse benchmarks known to the authors

153 Here, we leverage sampling from phylogenetically diverse boreal plants and lichens acros

154 rds capturing the physiological controls for phylogenetically diverse CAM systems in the face of the

155 unction (PrfA(-)/LLO(-)) mutants belonged to phylogenetically diverse clades of L. monocytogenes, and

156 ed with similar measurements obtained from a phylogenetically diverse dataset of woody species from t

157 ic determinants involved in resistance to 14 phylogenetically diverse double-stranded DNA phages usin

158 mplicon sequencing on samples collected from phylogenetically diverse herbivorous hosts.

159 , we fed gnotobiotic mice, colonized with 54 phylogenetically diverse human gut bacterial strains, de

160 dly identify the immunomodulatory effects of phylogenetically diverse human gut microbes.

161 cently sequenced leaf transcriptomes from 48 phylogenetically diverse Lamiaceae species.

162 e Ediacaran macrobiota (~571-539 mya) record phylogenetically diverse marine palaeocommunities, inclu

163 Phylogenetically diverse microbes that produce long chai

164 A wide range of phylogenetically diverse microorganisms couple the reduc

165 mation in Amoebozoa and Metazoa requires the phylogenetically diverse MyTH4-FERM (MF) myosins DdMyo7

166 sarium species were shown to be prevalent in phylogenetically diverse native grasses, colonizing mult

167 identify groups of spatially correlated but phylogenetically diverse organisms.

168 overcome in evolutionary time, resulting in phylogenetically diverse parasite communities feeding on

169 (>=0.987-0.990 water-activity), a stable but phylogenetically diverse population of heterotrophs in t

170 ses and estimation of shared haplotypes with phylogenetically diverse populations also indicates the

171 rotein IX and can replicate efficiently in a phylogenetically diverse range of species.

172 -term (10 month) in situ experiment with two phylogenetically diverse scleractinians (Acropora palmat

173 Here, we examine a phylogenetically diverse set of butterflies and demonstr

174 old acclimation in Pooideae and found that a phylogenetically diverse set of Pooideae species display

175 ter cold treatment in transcriptomes of five phylogenetically diverse species revealed widespread spe

176 Thirteen ecologically and phylogenetically diverse species were studied in detail.

177 invasive strains, from which we selected 492 phylogenetically diverse strains for transcriptome analy

178 Phylogenetically diverse tree nut allergens can activate

179 (i) a model, defined 15-member consortium of phylogenetically diverse, sequenced human gut bacterial

180 es various needs of the foreigner, which are phylogenetically diverse: viruses, bacteria, protozoa, o

181 T3SS are phylogenetically divided into several families based on

182 arthropoda, offers the stratigraphically and phylogenetically earliest direct evidence of ecdysis wit

183 ribe one of the stratigraphically lowest and phylogenetically earliest members of the avian stem line

184 of the tyrannosaurid bauplan, including the phylogenetically earliest record of an arctometatarsalia

185 from longirostrine taxa, providing the first phylogenetically-explicit quantitative assessment of tro

186 Recent research demonstrates sleep to be phylogenetically far more pervasive than previously appr

187 date phyla radiation (CPR) bacteria separate phylogenetically from other bacteria, but the organismal

188 odular Calcium binding protein) is conserved phylogenetically from vertebrates to arthropods.

189 ensitivity across these groups is moderately phylogenetically heritable, and that its distribution is

190 wed 2 Vellore subgroups (I and II) that were phylogenetically highly related to previously described

191 A higher-order function may evolve phylogenetically if it is demanded by multiple domain-sp

192 ome sampling is more comprehensive, but many phylogenetically important groups remain unsampled.

193 we used geographic distribution data [1, 8], phylogenetically imputed ecological traits, and an amphi

194 Phylogenetically independent contrasts indicated correla

195 in radiation-resistant species in multiple, phylogenetically independent groups of bacteria.

196 st studies on this topic have used clades as phylogenetically independent replicates for pattern anal

197 genetic structure of a widely dispersed and phylogenetically independent sample of Amazonian bryophy

198 differentially resistant maize genotypes to phylogenetically infer ancestral symptom intensities and

199 mensis on the basis of the taxonomically and phylogenetically informative morphology of the canine, m

200 selected cases 102 virtually homoplasy-free, phylogenetically informative retroelements to draw a com

201 ony-informative sites, which are known to be phylogenetically informative.

202 However, the recovery of phylogenetically-informative protein domains can be up t

203 Using phylogenetically informed analyses, we tested for associ

204 tral reconstruction approaches together with phylogenetically informed comparative analyses to test w

205 Phylogenetically informed distances are commonly used in

206 and heretofore unrecognized cleavage in the phylogenetically informed distances is the relative weig

207 investigate the properties of two classes of phylogenetically informed distances: the Unifrac family,

208 We provide phylogenetically informed evidence for the hypothesis th

209 This general model was tested within a phylogenetically informed framework using a data set com

210 Using phylogenetically informed generalized linear mixed model

211 ERAPHIM ("Studying Environmental Rasters and PHylogenetically Informed Movements") is a suite of comp

212 es of life-history strategies, obtained from phylogenetically informed principal component analysis:

213 Using phylogenetically informed statistical approaches, we ide

214 Phylogenetically informed trait comparisons across entir

215 We first used a phylogenetically-informed algorithm to identify bacteria

216 Here, we use phylogenetically-informed analyses and a comprehensive d

217 anatomical region using 3D morphometric and phylogenetically-informed evolutionary analyses.

218 rphology of various hominoid clades based on phylogenetically-informed maximum likelihood methods.

219 i isolated from treated patients' blood were phylogenetically inseparable from Lactobacilli isolated

220 This taxon is phylogenetically intermediate between the oldest basal t

221 gen. et sp. nov., is a small-bodied species phylogenetically intermediate between the oldest, smalle

222 rotein-coupled receptors (GPCRs) are divided phylogenetically into six classes(1,2), denoted A to F.

223 w that local environmental niches are highly phylogenetically labile for both seedlings and adult tre

224 ed to other patients and among patients with phylogenetically linked cases but no evidence of direct

225 transmission was calculated as the number of phylogenetically linked HIV infections that occurred dur

226 Of 60 possible phylogenetically linked pairings with the 43 women young

227 For the 92 possible phylogenetically linked pairings with the 56 women aged

228 s for several traits from extant and extinct phylogenetically linked species.

229 rted condomless sex with other partners), no phylogenetically linked transmissions occurred over elig

230 ble couple-years of follow-up, but none were phylogenetically linked within-couple transmissions, res

231 had sequences available; 13 (93%) pairs were phylogenetically-linked dyads.

232 participants with HIV-1 sequences, none was phylogenetically-linked with another AHI index.

233 suggest conservation of ontogenetically and phylogenetically lower-order systems in adults' numerica

234 We phylogenetically mapped putative WGDs as identified from

235 organization between radiation-resistant and phylogenetically matched, nonresistant species argues ag

236 visual or auditory cues, but extends to the phylogenetically more ancient olfactory domain.

237 Shawo belong to the C4 subgenotype, and are phylogenetically more related to those from the distant

238 es of mycoheterotrophic and green plants are phylogenetically more similar within than between these

239 capacity for complex facial communication is phylogenetically more widespread than previously thought

240 (Late Silurian, 422 Million years old), the phylogenetically most basal stem osteichthyan, visualize

241 The new volant taxa are phylogenetically nested with arboreal eleutherodonts.

242 Phylogenetically, noroviruses are divided into seven gen

243 ycle transitions and all deploy a mixture of phylogenetically old and new genes.

244 atomical and functional data, the habenula-a phylogenetically old brain structure present in all vert

245 plexity of cortical circuits is generated by phylogenetically old interneuron types, complemented by

246 se data therefore support the existence of a phylogenetically old subcortical pathway providing fast,

247 brain areas, determining the contribution of phylogenetically older pathways is crucial to understand

248 cortex massively innervates the brainstem, a phylogenetically older structure, via cortico-fugal axon

249 y coincided with the convergent evolution of phylogenetically or functionally similar associations in

250 genus: Pongo), the only Asian great apes and phylogenetically our most distant relatives among extant

251 l filtering of convergent traits can produce phylogenetically overdispersed communities, even at the

252 that occurred in co-infections tended to be phylogenetically overdispersed.

253 The genus Neolecta defines an enigma: phylogenetically placed in a related group containing mo

254 re absent from the reference set, we seek to phylogenetically position them with respect to the under

255 populations with low TDD may be sensitive to phylogenetically 'random' losses of food species, wherea

256 Recalibration of molecular clocks to exclude phylogenetically reassigned Palaeozoic taxa results in e

257 We phylogenetically reconstructed 47-residue ancestral moti

258 igate wetland species, communities were more phylogenetically related as flooding increased.

259 tassium homeostasis seems to be conserved in phylogenetically related bacteria.

260 Phylogenetically related groups of species contain linea

261 sess a similar genetic toolbox consisting of phylogenetically related MADS domain proteins.

262 ) Do odors from non-host plants that are not phylogenetically related or physicochemically similar to

263 semble activity, and its conservation across phylogenetically related ORs.

264 uate the activity of the prophages, identify phylogenetically related phages, and annotate the functi

265 x chromosome may share a common origin among phylogenetically related species.

266 These esters were produced by eight phylogenetically related strains of Saprochaete genus.

267 Here we show that HO is structurally and phylogenetically related to a family of unorthodox homin

268 or, referred to here as A(0), which was more phylogenetically related to A(1) than A(2).

269 bus, by separate acquisition of qmoABC genes phylogenetically related to bacterial hdrA genes.

270 bow trout (Oncorhynchus mykiss) CC chemokine phylogenetically related to both mammalian CCL27 and CCL

271 our study suggests that ODDSOC2 is not only phylogenetically related to FLC in eudicots but also fun

272 Bacteria phylogenetically related to known haloalkaline sulfate a

273 runcated galE2 remnant in Region D' was also phylogenetically related to the bi-functional galE of th

274 ported index case(s) with epidemic genotypes phylogenetically related to the genotypes circulating du

275 Although initiators and loaders are phylogenetically related, the mechanisms they use for ac

276 te an unexpectedly specific and deep-rooted, phylogenetically shared behavioral function for POA gala

277 The results demonstrate a deep, phylogenetically shared role for POA galanin neurons in

278 By nature, phylogenetically similar microbial species are more like

279 species richness, leading to communities of phylogenetically similar species sharing evolutionary co

280 We performed a large-scale, phylogenetically structured study of an entire plant gen

281 Finally, we demonstrate phylogenetically that human SARS-CoV-2 strains have been

282 The yolk sac is phylogenetically the oldest of the extraembryonic membra

283 Phylogenetically these bat Mx1 genes cluster closely wit

284 Phylogenetically, these two toxins form new groups withi

285 Phylogenetically they can be divided into three groups.

286 Although grouped phylogenetically together, we show that the Cas13a enzym

287 was an evolutionary chimera, with 25% of its phylogenetically tractable nucleus-encoded proteins deri

288 of the system introduced here allowed us to phylogenetically triangulate the locations of gene loss

289 her than identifying and removing putatively phylogenetically uninformative sites, instead aims to id

290 Symbionts that are phylogenetically unique to sponges do not disproportiona

291 m both healthy and inflamed intestines bound phylogenetically unrelated bacterial species.

292 s to switch resistance specificities between phylogenetically unrelated pathogens.

293 I-anchored proteins that act together with a phylogenetically unrelated receptor kinase.

294 es; these results can be used to profile GPs phylogenetically via an interactive viewer.

295 These carbohydrates are phylogenetically widespread among bacteria, with numerou

296 lybdenum-dependent nitrate reductases may be phylogenetically widespread as many bacteria contain bot

297 of the ligand binding domains of most of the phylogenetically widespread classes of riboswitches, eac

298 A potentially important and phylogenetically widespread source of such variation is

299 the minimal requirements for life(1) and are phylogenetically widespread(2).

300 how high similarity to (>90%), and affiliate phylogenetically with, those of coexisting bacterial met