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1 onal distribution of the resistance-encoding plasmid.
2 nockout is combined with insertion of a pAID plasmid.
3 with four fluorescent reporters coded by one plasmid.
4 resist acquisition of a second copy of said plasmid.
5 which we constructed the synthetic screening plasmid.
6 nly the transposon but also the entire donor plasmid.
7 ining terminally gapped, linearized reporter plasmid.
8 mple insertions and integration of the donor plasmid.
9 ited strains after curing of the base editor plasmid.
10 n in small intestine was highly dependent on plasmid.
11 asites, including bacteriophages/viruses and plasmids.
12 NA and transient expression from transfected plasmids.
13 redicts the persistence and abundance of any plasmids.
14 which frequently are encoded on conjugative plasmids.
15 SLC7A5 or Slc7a5 short hairpin RNA encoding plasmids.
16 TtAgo defends against transformation by DNA plasmids.
17 the conjugative, beta-lactamase and cryptic plasmids.
18 h their prevalence and co-linkage to certain plasmids.
19 rs enables identification of the transferred plasmids.
20 electroporation of Cas9 and single guide RNA plasmids.
21 ce the spread of these multi-drug-resistance plasmids.
22 ting a role for Acrs in the dissemination of plasmids.
23 mportance of CRISPR-mediated defence against plasmids.
24 genetic invaders such as bacteriophages and plasmids.
25 ntisense oligonucleotides and overexpression plasmids.
26 e-series data revealed that the variation in plasmid abundance over time explained more of the observ
31 catabolic pathway are separately located on plasmid and chromosome indicates that recent assembly an
32 erms of Single Strand Break (SSB) yields for plasmid and Double Strand Break (DSB) yields for plasmid
34 a detailed protocol to (i) generate complex plasmid and lentivirus CellTag libraries for labeling of
35 ystem capable of acquiring guide RNAs to new plasmid and phage targets and a second providing long-te
36 horizontal transfer of the conjugative pRS01 plasmid and stimulates retrotransposition of the intron.
37 library consists currently of more than 2600 plasmids and 1700 fly lines with a focus on targeting ki
38 an improved Cas9 plasmid with multiple sgRNA plasmids and an efficient screening procedure to identif
39 veloped a strategy to characterize virulence plasmids and applied it to analyze hundreds of strains c
41 le and spacers are acquired from transferred plasmids and permanently stored in genomic CRISPR arrays
43 rey thereby halving the number of expression plasmids and recombinant proteins required for screening
44 cerevisiae strains that lack endogenous 2mu plasmids and reproducibly inhibit mitotic plasmid stabil
45 microbial consortia transferring mobilizable plasmids and with quantitative data available in the lit
46 oter for a heat-inducible transposase helper plasmid, and creating vectors marked with the D. melanog
47 surements to compare translocation of phage, plasmid, and synthetic A-philic, GC rich sequences by th
50 ombination, it was surprising that oncogenic plasmids are descended from a few conserved lineages.
55 omic and phylogenetic analyses, we show that plasmids are widespread in a collection of 3724 gonococc
56 The MSN provides efficient loading of Cas9 plasmid as well as Cas9 protein/guide RNA ribonucleoprot
57 lying on and developing massive libraries of plasmids as vectors for directed evolution, combinatoria
61 these classic genetic methods, we describe a plasmid-based library methodology that affords bidirecti
62 nd FZD10, and miR-153-3p sequestration via a plasmid-based miR inhibitor system attenuated Wnt signal
65 possibility of using the recently developed plasmid-based rotavirus reverse genetics (RG) system to
66 ration in mammalian cells, recombining donor plasmids bearing the attB recognition site with introduc
67 ct that Type III immunity can be provided by plasmid-borne mini-arrays open ways for genomic manipula
69 was transformed to 3,4-dichloromuconate by a plasmid-borne ring-cleavage chlorocatechol 1,2-dioxygena
71 in" based on the presence of an eleven-gene, plasmid-borne, virulence cluster of sulfur redox genes.
72 ucture and dynamics of over 10,000 bacterial plasmids, by quantifying their genetic similarities and
75 tween bacteria, and in Neisseria gonorrhoeae plasmids can mediate high-level antimicrobial resistance
77 ommon mechanism for the replication of small plasmids carrying antibiotic resistance genes in Gram-po
78 n them have led to a complex array of mosaic plasmids carrying bla (KPC) Taken altogether, these resu
80 we show one such stabilizing factor is host-plasmid coevolution under antibiotic selection, which fa
81 by selection for genomic incorporation of a plasmid coexpressing BC200 and the neomycin resistance g
82 ment in the cloud including simple mutant or plasmid collections and purchase-tracking databases.
83 eater plasmid persistence in both novel host-plasmid combinations and, in some cases, multi-plasmid h
84 omic analysis indicates that: 1) these large plasmids comprise an emerging family present in differen
86 escribe approaches for introducing exogenous plasmid constructs and for sparse cell labeling to image
88 d gplas, a new approach to reliably separate plasmid contigs into discrete components using sequence
89 amework for the much needed incorporation of plasmid data into genomic surveillance systems, an essen
91 oculation that bypasses the gastric barrier, plasmid-deficient Chlamydia produced infectious progenie
93 roxyethyl acrylate that effectively compacts plasmid DNA (pDNA) through electrostatic binding and int
95 4(+) T cells expressed cGAS and responded to plasmid DNA by upregulation of ISGs and release of bioac
96 We found that site-specific mutations in plasmid DNA can be generated in Escherichia coli using m
98 AS-dependent cell-intrinsic response to both plasmid DNA challenge or inoculation with HSV-1DeltaUL41
100 ity and eTE were systematically explored for plasmid DNA encoding green fluorescent protein following
102 mia that hydrodynamic tail-vein injection of plasmid DNA encoding the adenine base editor (ABE) and a
103 li (E coli) containing plasmids, followed by plasmid DNA extraction and purification prior to downstr
106 g Trojan horse liposomes (THLs), wherein the plasmid DNA is encapsulated in 100 nm pegylated liposome
109 nthetic nanonucleases, able to cleave pBR322 plasmid DNA with the highest efficiency reported so far
111 he NPC1(-/-) null mouse, and delivery of the plasmid DNA, and NPC1 mRNA expression in brain, spleen,
112 In mouse T cells, cGAS KO ablated sensing of plasmid DNA, and TREX1 KO enabled cells to sense short i
114 We transfected various source cells with plasmid DNAs and stimulated the cells with a focal and t
117 ressed from bacteria transformed with pET20b plasmid encoded with CD200 extracellular domain and core
119 -copy number bacterial plasmids is driven by plasmid-encoded ATPases that are represented by the P1 p
120 gRNA into the host cytoplasm requires the F-plasmid-encoded coupling protein, TraD, which is located
121 y inoculated Chlamydia sp. deficient in only plasmid-encoded pGP3 was no longer able to colonize the
123 resent in B. subtilis NCIB 3610 and that the plasmid-encoded RNase HI contributes to chromosome stabi
125 A lower dose of 1 mg/kg of 2-12C or a DNA plasmid-encoded version of 2-12C reduced pathology and v
127 g human embryonic kidney (HEK293) cells with plasmids encoding both SaCas9 and an individual sgRNA.
128 , mice were sequentially vaccinated with DNA plasmids encoding capsid proteins of different RV A type
129 l isolates and allows a detailed analysis of plasmid epidemiology based solely on short-read sequence
130 te suppression of plasmid replication and/or plasmid eviction in multiple orthogonal readouts and pot
132 growing Escherichia coli (E coli) containing plasmids, followed by plasmid DNA extraction and purific
135 mydia sp. survived significantly better than plasmid-free Chlamydia sp. in small intestinal tissues.
137 culated into the same mouse small intestine, plasmid-free Chlamydia sp. was no longer able to spread
139 m, against a strain carrying the large, pCRE plasmid from which we constructed the synthetic screenin
141 genomics projects but the reconstruction of plasmids from these data is facing severe limitations, s
142 plasmids into cliques, which correlate with plasmid gene content, bacterial host range, GC content,
144 nantly vertically inherited, while accessory plasmid gene families show significantly increased mobil
145 eeded to characterize the mechanism by which plasmid genes determine vancomycin susceptibility in C d
146 Transfecting K562 cells with a reporter plasmid harboring the TOP2alpha/170 3'-UTR together with
147 nd was common in two highly stable IncI1 MDR plasmids harbouring (bla(CTX-M-1),sul2, tetA) or (bla(CT
149 lasmids, which include pKpQIL-like and IncX3 plasmids, have a long association (and are coevolving) w
154 c immune systems provide anti-viral and anti-plasmid immunity via a dual mechanism of RNA and DNA des
157 intestine, indicating a critical role of the plasmid in chlamydial differentiation into infectious pa
158 reak site was restored in the recircularized plasmid in control cells by using the endogenous homolog
159 then tracked the appearance of ten different plasmids in all 2173 genomes, and found evidence of plas
161 quail, based on the in vivo transfection of plasmids in circulating Primordial Germ Cells (PGCs).
162 itated the emergence of MDR via two distinct plasmids in communities consisting of Escherichia coli a
164 elements were first discovered in bacterial plasmids in the 1980s and have recently been characteriz
166 entified an extensive array of AMR genes and plasmids, including an identical multidrug-resistant pla
170 se a community detection algorithm to assign plasmids into cliques, which correlate with plasmid gene
171 pt demonstration by genetically transforming plasmids into Escherichia coli cells, showing transforma
175 artition," of many low-copy number bacterial plasmids is driven by plasmid-encoded ATPases that are r
176 , including an identical multidrug-resistant plasmid isolated from both S. sonnei and E. coli in the
177 e genes, including blaKPC-2 in an IncFIBpQIL plasmid, KL51 capsule, and yersiniabactin virulence dete
178 tion of PCR cassettes with a Cas12a-encoding plasmid leads to robust endogenous expression of tagged
179 agents for molecules that selectively reduce plasmid levels relative to effects on bacterial growth.
184 egions of the nod locus, as well as in other plasmid loci, were associated with differences in CFN.
186 ur approach to identify compounds that alter plasmid maintenance, confer resensitization to antimicro
187 acin resistance in S. sonnei, in addition to plasmid-mediated azithromycin resistance, is of signific
190 estigated host suppression of 2-micron (2mu) plasmids, multicopy nuclear parasites that have co-evolv
191 n clinical settings, summarized as using one plasmid/multiple lineages, multiple plasmids/multiple li
192 sing one plasmid/multiple lineages, multiple plasmids/multiple lineages, and multiple plasmids/one li
193 lon inoculations to reveal the impact of the plasmid on chlamydial colonization in distinct regions o
195 njection of DNA as a competitor, either in a plasmid or in chromosomal DNA, containing the same bindi
196 Proteins were expressed from transfected plasmids or knocked down with small interfering RNAs in
199 rovides a new alternative to more cumbersome plasmid- or PCR-based protein expression workflows and s
205 mosome (CC), linear chromosome (LC), cryptic plasmid (pAt), and tumor-inducing plasmid (pTi), and gro
207 us faecalis PrgA, encoded by the conjugative plasmid pCF10, is a surface protein that has been implic
211 h of data on prevalence of AMR genotypes and plasmid persistence absent from phenotypic data and, als
212 her, pleiotropic effects resulted in greater plasmid persistence in both novel host-plasmid combinati
216 dleless injection device (Biojector) and DNA plasmid plus gp120 protein plus MF59 adjuvant boost.
218 bundance in hepatocyte genomic DNA and input plasmid pools identified several thousand miRNA inhibito
221 estine but was 530-fold less infectious than plasmid-positive Chlamydia, suggesting that (i) the noni
222 Vaccine Trials Network (HVTN) 111 tested DNA plasmid prime by needle or needleless injection device (
223 nse rates were significantly higher with DNA plasmid prime via Biojector than ALVAC prime (91.4% vers
224 drug-resistant/multidrug-resistant-inducing plasmids, probably facilitated by horizontal transfer fr
226 Mobile genetic elements (MGEs), such as plasmids, promote bacterial evolution through horizontal
227 sters; it also underlined the risk of covert plasmid propagation in healthcare settings and revealed
228 a Green fluorescent protein (Gfp)-tagged AR plasmid (pRP4-gfp) within an E. coli host (EcoFJ1) in th
230 ), cryptic plasmid (pAt), and tumor-inducing plasmid (pTi), and grows by polar growth from a single g
231 sequencing (4C-seq) using the EBV origin of plasmid replication (oriP) as a "bait" in lymphoblastoid
232 vity including up to complete suppression of plasmid replication and/or plasmid eviction in multiple
234 , we found kasugamycin and CGS 15943 blocked plasmid replication, respectively, by inhibiting express
235 transposase genes and AMR genes, as well as plasmid replicons, highlights the potential role of hori
236 hat already contain a particular conjugative plasmid resist acquisition of a second copy of said plas
239 oped SCAMPR (Single-Cell Assay for Measuring Plasmid Retention) to measure copy number heterogeneity
242 t contexts - from improved reconstruction of plasmid sequences and refined analysis of metagenomic da
244 small molecules that efficiently evict pCRE plasmids should restore much-needed treatment options.
245 few species of bacteria and their phage and plasmids show that CRISPR-Cas systems can play this role
247 Following an intragastric inoculation, the plasmid significantly improved chlamydial colonization.
250 mosomes and plasmids with roles ranging from plasmid stabilization to biofilm formation and persisten
251 Standard curves based on tenfold diluted plasmid standard exhibited high specificity and sensitiv
252 f a vaccine platform based on a unique three-plasmid system to efficiently generate recombinant MVA v
253 if the same interactions were observed for F-plasmid T4SS proteins and when one interaction partner w
256 acity when the target genes are located on a plasmid, the CapsidCas13a(s) exhibit strong bacterial ki
257 ome and frequently carrying numerous cryptic plasmids - their genomes are often pockmarked with inser
258 gration of both viral DNA ends into a target plasmid then proceeded in a cell extract-dependent react
259 Whilst associated with the maintenance of plasmids, they also act in bacterial immunity and antibi
261 nhanced green fluorescent protein-expressing plasmid to cells at a scalable throughput of 200,000 cel
262 Agrobacteria require an oncogenic Ti or Ri plasmid to transfer genes into plants and cause disease.
264 adopted in this work to help facilitate DNA plasmids to cross both cell plasma membrane and nuclear
265 coustofluidic sonoporation method to deliver plasmids to immortalized and primary human cell types, b
266 DNA makes these a useful tool for delivering plasmids to study proteins of interest in a variety of c
267 ion mediated by different types of phage and plasmids to the evolution and maintenance of CRISPR-Cas
269 ly found that antimicrobial usage may impact plasmid transfer between commensal E. coli and S. sonnei
271 s in all 2173 genomes, and found evidence of plasmid transfer independent from bacterial transmission
274 al patterns that highlight the importance of plasmid transmission in pathogen diversification as well
276 can be extensive and is driven by different plasmid types, with the IncX type being the most activel
278 Confocal microscopy of quantum dot-labeled plasmid uptake in vivo reveals association between our p
279 re user-friendly web interface and many more plasmid vectors, but also new links of the plasmids to a
282 cus faecalis, conjugation of a Cas9-targeted plasmid was enhanced by anti-CRISPRs derived from Entero
285 ent-specific (+)RNAs [(+)ssRNAs], a chimeric plasmid was transfected, from which the capping enzyme N
286 otein fusions either from endogenous loci or plasmids were directly compared in functional assays.
287 efficiencies were more stable than when the plasmids were incubated in unfiltered and unheated aged
288 ikelihood that a host will already contain a plasmid when it acquires another through conjugation.
289 imarily via the single epidemic pOXA-48-like plasmid, which emerged recently in clinical settings and
291 to lytic and temperate phage and conjugative plasmids will select for and maintain CRISPR-Cas systems
292 Based on the co-delivery of an improved Cas9 plasmid with multiple sgRNA plasmids and an efficient sc
294 rticles containing nonintegrating expression plasmids with Foxm1 or Foxf1 cDNAs were injected intrave
296 are found in many bacterial chromosomes and plasmids with roles ranging from plasmid stabilization t
298 re than 94% of gonococci possess the cryptic plasmid, with its absence correlated with the presence o
299 aptation was mostly limited to the symbiosis plasmids, with mutations in putative signaling genes.