ライフサイエンスコーパス: plastid genome

1 the introduction of the bar(au) gene in the plastid genome.

2 ations and for in planta manipulation of the plastid genome.

3 th the evolutionary history indicated by the plastid genome.

4 ic region of the tobacco (Nicotiana tabacum) plastid genome.

5 roduced into the tobacco (Nicotiana tabacum) plastid genome.

6 tools available for the manipulation of the plastid genome.

7 istance (aadA) transgene incorporated in the plastid genome.

8 t via the Gibbs sampler, and apply it to the plastid genome.

9 nd Euglena viridis, and in the Astasia longa plastid genome.

10 he reduction in size and gene content of the plastid genome.

11 for the elimination of marker genes from the plastid genome.

12 cating a native gene from the nucleus to the plastid genome.

13 sion element and its cognate sequence in the plastid genome.

14 e removed by targeted gene deletion from the plastid genome.

15 arget sites defined by direct repeats in the plastid genome.

16 tability is consistent with mutations in the plastid genome.

17 of rpoB (encoding the beta-subunit) from the plastid genome.

18 ype, multi-subunit polymerase encoded by the plastid genome.

19 eric ACCase, which is encoded in part by the plastid genome.

20 r chromosomes with a uniparentally inherited plastid genome.

21 ut it is still unknown whether they harbor a plastid genome.

22 formation of the tobacco (Nicotiana tabacum) plastid genome.

23 a primary plastid-bearing lineage without a plastid genome.

24 h less than 100 are typically encoded in the plastid genome.

25 the synthesis of polypeptides encoded by the plastid genome.

26 cross all nuclear chromosomes as well as the plastid genome.

27 ed with the subunits that are encoded by the plastid genome.

28 nserted into the tobacco (Nicotiana tabacum) plastid genome.

29 s expression and coordination of nuclear and plastid genomes.

30 oring the gene uptake from mitochondrial and plastid genomes.

31 s by extracting sequences from 988 published plastid genomes.

32 cyanobacteria, but 10-fold larger than most plastid genomes.

33 gy that involve the multistep engineering of plastid genomes.

34 plastid DNA and selected to remove wild-type plastid genomes.

35 toichiometry) of nuclear, mitochondrial, and plastid genomes.

36 subunits chlL, chlN, and chlB are encoded by plastid genomes.

37 ination of the activities of the nuclear and plastid genomes.

38 traspecific diversity and evolution of their plastid genomes.

39 dence for divergent evolution of fucoxanthin plastid genomes.

40 angement) and transcription-level studies of plastid genomes.

41 lts in the context of other legume and rosid plastid genomes.

42 to the highly elevated evolutionary rates in plastid genomes.

43 variation in the cranberry mitochondria and plastid genomes.

44 es real-time coordination of the nuclear and plastid genomes.

45 rmined primarily by means of analyses of the plastid genome(3,4).

46 have been characterized for parasitic plant plastid genomes [5, 8-11], the nuclear genome and transc

47 between the coding and non-coding regions of plastid genomes, a significant correlation between seque

48 ic codA has been introduced into the tobacco plastid genome and 5FC was used to select against tissue

49 th transcriptome sequencing, to search for a plastid genome and an associated gene expression system

50 We sequenced the plastid genome and confirmed that it lacks the full comp

51 of plastid DNA covering about 94 kb (83%) of plastid genome and including one or more full-length int

52 lized form of the protein interacts with the plastid genome and influences genome stability and plast

53 t is associated with DNA from throughout the plastid genome and with a subset of plastid RNAs that in

54 lastid-LCGbase contains information from 470 plastid genomes and exhibits several unique features.

55 t of GFP that can be introduced into tobacco plastid genomes and is highly expressed in regenerated p

56 lexity of organellar (i.e., mitochondria and plastids) genomes and discuss their 3D packing into nucl

57 of retention versus loss for photosynthesis, plastid genomes, and plastid organelles.

58 Exceptions to this universal plastid genome architecture are very few and include the

59 otes, and highlights unexpected variation in plastid genome architecture.

60 Deletions in the plastid genome are known to occur by recombination betwe

61 Furthermore, the fertile and CMS plastid genomes are conserved, differing only by zero to

62 Angiosperm plastid genomes are generally conserved in gene content

63 etect nuclear copies, suggesting that linear plastid genomes are not necessarily prone to integration

64 The transgenic plastid genomes are products of a multistep process, inv

65 Plastid genomes are relatively small and conserved DNA m

66 In this study, we assembled and collected 40 plastid genomes belonging to 23 species representing fou

67 Nitzschia Nitz4 has retained its plastid and plastid genome, but changes associated with the transiti

68 it strong signatures of coevolution with the plastid genome, but their encoded proteins lack organell

69 The transforming DNA integrates into the plastid genome by homologous recombination via plastid t

70 king plastid DNA to target insertions in the plastid genome by homologous recombination.

71 ch an attB site has been incorporated in the plastid genome by homologous recombination.

72 and the constructs were introduced into the plastid genome by particle bombardment.

73 nt metabolites through transformation of the plastid genome by relocating a native gene from the nucl

74 enetic evidence, replacement of the resident plastid genome by the alien genome occurs in the absence

75 based on incorporation of foreign DNA in the plastid genome by the plastid's homologous recombination

76 en nuclear and organellar (mitochondrial and plastid) genomes by creating imbalances in the relative

77 s shows a predominantly gradual reduction in plastid genome composition and provides the most reduced

78 We find that even though plastid genomes contain <1% of the number of genes in th

79 The plastid genomes containing these divergent rpoA genes ha

80 tive, web-based database for fully sequenced plastid genomes, containing genomic, protein, DNA and RN

81 Although the E. tenella plastid genome contains an almost identical set of genes

82 Phylogenetic reconstruction of changes in plastid genome content revealed that an accelerated rate

83 ual process, during which all the 300-10,000 plastid genome copies are uniformly altered.

84 Given the high number of plastid genome copies in a cell, transformation unavoida

85 n possible in a fraction of the 1,000-10,000 plastid genome copies in a cell.

86 selective amplification of rare transformed plastid genome copies to obtain genetically stable trans

87 f marker genes from the approximately 10,000 plastid genome copies without transformation of the plan

88 he ptDNA of P. uvella represents the largest plastid genome currently reported from a nonphotosynthet

89 To address these issues, we employed plastid genome data from 138 species, including heteroko

90 Both recombination pathways result in plastid genome deletions.

91 r, these findings highlight that many public plastid genomes derive from sequence data with highly va

92 Plastid genomes differ substantially between these algae

93 endent protocol that enables manipulation of plastid genomes directly in plants to yield genetically

94 The deleted plastid genomes disappeared in the seed progeny lacking

95 duced an inactive gfp* gene into the tobacco plastid genome downstream of the selectable spectinomcyi

96 ransgene excision occurs completely from all plastid genomes early in plant development.

97 synthesis-related genes from the nuclear and plastid genomes, elimination of isoprenoid biosynthesis

98 Some plastid genomes encode tmRNA, but smpB genes have only b

99 Plastid genome-encoded subunits are synthesized by 70S c

100 consistent with our current understanding of plastid genome evolution in photosynthetic plants.

101 present herein a model of the trajectory of plastid genome evolution under progressively relaxed fun

102 omic approaches have significantly clarified plastid genome evolution, the movement of endosymbiont g

103 or the development of more complex models of plastid genome evolution.

104 Our results confirm that grass plastid genomes exhibit acceleration in both genomic rea

105 ncing expression of nuclear genes related to plastid genome expression and tetrapyrrole biosynthesis

106 ibiotic resistance genes incorporated in the plastid genome facilitate maintenance of transplastomes

107 of 83 protein-coding and rRNA genes from the plastid genome for 86 species of seed plants, including

108 recombinase target sites incorporated in the plastid genome for marker gene excisions are too short t

109 The Arabidopsis plastid genome generally lacks small repeats and exhibit

110 euglenoid plastids, the organization of the plastid genome, group III intron evolution and euglenoid

111 holly or partially within the dinoflagellate plastid genome have a markedly accelerated rate of evolu

112 have been reported, but rates in Geraniaceae plastid genomes have not been characterized.

113 In contrast, the mitochondrial and plastid genomes have the smallest gene content among fun

114 aadA shows that, despite the multiplicity of plastid genomes, homology-based excision ensures complet

115 The other alternative pathway uncovered a plastid genome 'hot spot' of recombination composed of m

116 eae) reveals the largest and most rearranged plastid genome identified to date.

117 ion, influence the segregation of transgenic plastid genomes, identify loci affecting dao function in

118 iciency, will advance the engineering of the plastid genome in Arabidopsis.

119 e retention of highly diverged and truncated plastid genome in Cytinus.

120 These genes are typically localized to the plastid genome in higher plants and algae except rbcS, w

121 The plastid genome in higher plants encodes subunits of an E

122 Near-complete expression of a diatom's plastid genome in one foraminiferal species suggests kle

123 The plastid genome in photosynthetic higher plants encodes s

124 The nature and extent of the plastid genome in the dominant perdinin-containing dinof

125 r cell-to-cell movement of the entire 161-kb plastid genome in these plants, most likely in intact pl

126 The plastid genome in these taxa is reduced to single-gene m

127 gle nucleotide variants in mitochondrial and plastid genomes in Arabidopsis.

128 eins are distributed between the nuclear and plastid genomes in higher plants, and coordination of th

129 y surpassing the other five sequenced legume plastid genomes in novel DNA content.

130 nness across a sample of publicly accessible plastid genomes in relation to their genome structure, a

131 Plastid genomes in the flowering plant family Geraniacea

132 polymerase, POLIB, act as safeguards against plastid genome instability in Arabidopsis (Arabidopsis t

133 Taken together, these results indicate that plastid genome instability induces an oxidative burst th

134 hy3polIb-1 and ciprofloxacin-treated plants, plastid genome instability is associated with increased

135 le is known about the direct consequences of plastid genome instability.

136 The transfer of ancestral plastid genomes into mitochondrial genomes to generate m

137 The AT-rich E. tenella plastid genome is a 35-kb circular element.

138 gae, particularly in structure: The Chromera plastid genome is a linear, 120-kb molecule with large a

139 Localization of the bar gene in the plastid genome is an attractive alternative to incorpora

140 The plastid genome is divided early in this process, associa

141 rporation of a selectable marker gene in the plastid genome is essential to uniformly alter the thous

142 The wild-type plastid genome is expected to be stable, even if CRE is

143 The plastid genome is highly conserved among plant species,

144 ion does not have this limitation, since the plastid genome is maternally inherited in most plants, m

145 s only three protein-coding genes, and their plastid genome is reduced to a 35-kb-long circle.

146 Stable genetic transformation of the plastid genome is reported in a higher plant, Nicotiana

147 The function of the 35 kb plastid genome is unknown, but its evolutionary origin a

148 egration of foreign DNA into algal and plant plastid genomes is a rare event, with only a few known e

149 also evaluate whether sequencing evenness in plastid genomes is biased by phylogenetic signal and ass

150 ker excision proved that manipulation of the plastid genomes is feasible within an intact plant.

151 When uniform transformation of all plastid genomes is obtained, the marker genes can be exc

152 a member of Alveolata with the least derived plastid genome known for the whole group.

153 and structure, life-history strategies, and plastid genomes, little is known about the diversity of

154 Here, we have aimed to sequence the plastid genome of A. marina and its comparison with rela

155 Remarkably, the plastid genome of A. protothecoides is only slightly lar

156 ribution of PEP and NEP promoters within the plastid genome of barley (Hordeum vulgare).

157 ed with rearrangement endpoints, whereas the plastid genome of E. carvifolium is streamlined at 116 k

158 ortant gene (sufB) carried on the degenerate plastid genome of malaria and related parasites.

159 Fifteen genes that are always found on the plastid genome of other algae and plants have been trans

160 antial molecular evolutionary changes to the plastid genome of parasites before the loss of photosynt

161 Here, we present the plastid genome of Polytoma uvella: to our knowledge, the

162 minicircles, forming part of the fragmented plastid genome of the dinoflagellate Amphidinium opercul

163 d by extremely rapidly evolving genes in the plastid genome of the evening primrose Oenothera Repeats

164 structure, gene content, and synteny in the plastid genome of this Cuscuta species belonging to the

165 The plastid genome of Trifolium subterraneum is 144,763 bp,

166 We report on the plastid genome of Typha latifolia, the first non-grass P

167 with large and divergent genes, whereas the plastid genome of Vitrella is a highly compact circle th

168 gh-throughput sequencing to analyze complete plastid genomes of 91 total Cucurbita samples, comprisin

169 -encoded RNA polymerase (PEP) persist in the plastid genomes of all photosynthetic angiosperms.

170 We found that the plastid genomes of B37 and B73 lines are identical.

171 of some non-synonymous substitutions between plastid genomes of parental progenitors.

172 The plastid genomes of seed plants contain a conserved set o

173 The plastid genomes of several plants contain homologues, te

174 The plastid genomes of some nonphotosynthetic parasitic plan

175 Plastid genomes of the grasses (Poaceae) are unusual in

176 of two cbbX genes encoded by the nuclear and plastid genomes of the red algae Cyanidioschyzon merolae

177 The genetic maps of the plastid genomes of these two organisms are extremely sim

178 . texanum from clade I demonstrates that the plastid genomes of these two species encode the same num

179 ers for plastid genotyping, we sequenced the plastid genomes of three fertile maize lines (B37, B73,

180 Here, we compare the plastid genomes of two "transitional" green algae: the p

181 We sequenced plastid genomes of two ochrophytes, Ochromonas sp. CCMP1

182 Other studies, using whole plastid genomes of various algae and land plants, found

183 Among other sequenced chlorophyte plastid genomes, only that of the green alga Chlorella v

184 ity to express proteins at a high level, the plastid genome (plastome or ptDNA) is an increasingly po

185 hetic green algae, we generated the complete plastid genome (plastome) and mitochondrial genome (mito

186 The plastid genome (plastome) is highly conserved in autotro

187 Past work involving the plastid genome (plastome) of holoparasitic plants has be

188 In parasitic plants, the reduction in plastid genome (plastome) size and content is driven pre

189 inverted repeat (IR) boundary changes in the plastid genome (plastome), nucleotide substitution rates

190 The plastid genome (plastome), while surprisingly constant i

191 Additionally, a comparative investigation of plastid genomes (plastomes) grounded within this phyloge

192 environmental significance, very few diatom plastid genomes (plastomes) have been sequenced and stud

193 plants lost the organizational stability in plastid genomes (plastomes) that evolved in their algal

194 accessions within the genus, we assembled 54 plastid genomes (plastomes) using publicly available nex

195 Plastid genomes (plastomes) vary enormously in size and

196 evolutionary patterns and processes in fern plastid genomes (plastomes), and we include some new pla

197 g deleted genomes as a minor fraction of the plastid genome population were fertile and phenotypicall

198 r taxon sampling includes 51 newly sequenced plastid genomes produced by a genome skimming approach.

199 was transmitted by pollen rather than small plastid genome (ptDNA) fragments.

200 Successful manipulation of the plastid genome (ptDNA) has been carried out so far only

201 The plastid genome (ptDNA) of higher plants is highly polypl

202 ant with a uniform population of transformed plastid genomes (ptDNA) takes two cycles of plant regene

203 Observed plastid genome rearrangements are specific to engineered

204 seem to have undergone more nearly complete plastid genome reduction than other eukaryotes.

205 pectively), their combined deletion from the plastid genome results in synthetic lethality under auto

206 Similarly, plastid genome retention is strongly linked to the reten

207 Overall, the P. uvella and Polytomella plastid genomes reveal two very different evolutionary p

208 enetic analysis of D. sansibarensis based on plastid genomes revealed a strong geographical clusterin

209 Sequence analysis of mitochondrial and plastid genomes revealed genealogical differences both b

210 quently accompanied by a large deletion of a plastid genome segment which includes the tRNA-ValUAC ge

211 ong PCR approach to obtain large portions of plastid genome sequence from Cuscuta sandwichiana in ord

212 We also report the complete plastid genome sequence of Ceratophyllum demersum.

213 The plastid genome sequence of Euphorbia schimperi was assem

214 The complete plastid genome sequence of Pelargonium X hortorum (Geran

215 The plastid genome sequence of the parasitic liverwort Aneur

216 With the addition of this coccidian plastid genome sequence, we attempted to reexamine the a

217 stata are available, but there are many more plastid genome sequences and an increasing number of tra

218 anscriptomic analyses of currently available plastid genome sequences and nuclear transcriptome data

219 Both gene sequences and complete plastid genome sequences were assembled and analyzed fro

220 a recent surge in the availability of grass plastid genome sequences, but a comprehensive comparativ

221 Taking advantage of the expanded sampling of plastid genome sequences, we revisited the phylogenetic

222 We find that mitochondrial and plastid genomes share common types of structural and sma

223 Mitochondrial and plastid genomes show a wide array of architectures, vary

224 When all known plastid genome structural rearrangements in parasitic an

225 linked to the retention of two genes in the plastid genome, sufB and clpC, altogether suggesting a r

226 d cell division cycle 2) and a gene from the plastid genome (the elongation factor Tu).

227 sequencing depth and evenness among archived plastid genomes, their variability between genome partit

228 uced into the tobacco (Nicotiana tabacum L.) plastid genome through homologous recombination.

229 rmed into two different sites of the tobacco plastid genome through site-specific insertion to obtain

230 o use protein-coding sequences from complete plastid genomes to characterize rates and patterns of se

231 we use phylogenomic analyses of nuclear and plastid genomes to investigate the timing and pattern of

232 roteins for stored PEP to guaranty efficient plastid genome transcription during germination.

233 The plastid genome trees also provide strong support for a s

234 Angiosperm plastid genomes typically encode approximately 80 polype

235 cBio HiFi) to characterize mitochondrial and plastid genome variants in Arabidopsis thaliana msh1 mut

236 d and quantitative view of mitochondrial and plastid genome variants normally suppressed by MSH1, adv

237 a are available through a publicly available Plastid Genome Visualization Tool (Plavisto) at

238 marker gene for stable transformation of the plastid genome was developed that is similarly efficient

239 marker gene for stable transformation of the plastid genome was developed that is similarly efficient

240 Furthermore, we have found that the entire plastid genome was transmitted by pollen rather than sma

241 were targeted to different locations on the plastid genome, we reasoned that segregation of the two

242 atterns in the highly rearranged Geraniaceae plastid genomes, we propose a model of aberrant DNA repa

243 Complete plastid genomes were assembled and annotated for each of

244 The transformed plastid genomes were stable in the absence of Int.

245 s, it is estimated that 35% of the ancestral plastid genomes were transferred to mitochondrial genome

246 ribosomal proteins (PRPs) are encoded in the plastid genome, whereas the remaining 13 are encoded by

247 Contrary to the plastid genome, which exhibited a large number of fixed

248 me rearrangements are specific to engineered plastid genomes, which contain at least one loxP site or

249 er, our results reveal a dynamic and unusual plastid genome whose existence in a model organism will

250 , this regulation has not been examined at a plastid genome-wide level and for many genes, it is unkn

251 acing the native clpP1 gene in the Nicotiana plastid genome with homologs from different donor specie

252 First we transformed the tobacco plastid genome with the pCK2 vector in which the spectin

253 Comparisons of the Trifolium plastid genome with the Plant Repeat Database and search

254 corporate multiple transgenes in nuclear and plastid genomes with computational modelling to design t

255 P. wickerhamii, making it among the smallest plastid genomes yet observed from photosynthetic green a