ライフサイエンスコーパス: polyadenylated RNA

1 y can be harnessed to identify alternatively polyadenylated RNA.

2 O2 into enlarged nuclear speckles containing polyadenylated RNA.

3 S avoids molecular tagging or the capture of polyadenylated RNA.

4 nscripts (BARTs) are the most abundant viral polyadenylated RNA.

5 s that contain pre-mRNA splicing factors and polyadenylated RNA.

6 ripts accounted for approximately 20% of the polyadenylated RNA.

7 opy that the complex can circularize capped, polyadenylated RNA.

8 BRPCs without detection of KDR despite using polyadenylated RNA.

9 d protein uptake and nuclear accumulation of polyadenylated RNA.

10 correlate with final changes in splicing of polyadenylated RNA.

11 ect 42,114 unique transcripts from mouse NAc polyadenylated RNA.

12 on of ORF59 RNA and RBM15's association with polyadenylated RNAs.

13 e is proposed to explain the accumulation of polyadenylated RNAs.

14 re derived almost exclusively from small and polyadenylated RNAs.

15 solution of oligo(dT) hybridized to a large polyadenylated RNA (1.0 x 10(-7) cm2/s).

16 Following RNA extraction and isolation of polyadenylated RNA, a 5'-RNA adapter that includes an Mm

17 For this and other genes, polyadenylated RNA abundance does not indicate functiona

18 We now demonstrate that Slr1 binds to polyadenylated RNA and that its intracellular localizati

19 en the steady-state levels of CAR1-specific, polyadenylated RNA and the degree of arginase induction

20 rent biochemistries, with one examining only polyadenylated RNA and the other total RNA.

21 We isolated both polyadenylated RNA and the specific long noncoding RNA M

22 sed approach that captures tissue histology, polyadenylated RNAs and bacterial 16S sequences directly

23 ding proteins (RBPs) are based on capture of polyadenylated RNAs and cannot recover proteins that int

24 to identify the set of TEs able to generate polyadenylated RNAs and create a new transcript-based an

25 t hydroxymethylcytosine preferentially marks polyadenylated RNAs and is deposited by Tet in Drosophil

26 ) mice exhibited global decrease in m(6)A on polyadenylated RNAs and pathologic features associated w

27 BP3 positively impacts the nuclear export of polyadenylated RNAs and the expression of large multi-ex

28 not require molecular tagging or capture of polyadenylated RNA, and apply it to recover cross-linked

29 el approach to prepare 3' end fragments from polyadenylated RNA, and mapped the position of the poly(

30 Previous studies have looked at which polyadenylated RNAs are enriched in neuronal projections

31 s an exciting alternative whereby individual polyadenylated RNAs are sequenced directly, without the

32 onine serine repeat protein (Gts1p), nuclear polyadenylated RNA-binding protein 3, and minichromosome

33 everse transcriptase is used to quantify the polyadenylated RNA by extension of a biotinylated oligo-

34 wn without the inducer contained very little polyadenylated RNA capable of hybridizing to the isolate

35 ogy from Pacific Biosciences to sequence the polyadenylated RNA complement of a pooled set of 20 huma

36 he continually transcribed XIST gene and its polyadenylated RNA consistently localize to a nuclear re

37 cing coincides with nuclear retention of non-polyadenylated RNA derived from MuDR and recently descri

38 e cloned gene was used as a probe to analyze polyadenylated RNA derived from wild-type and mutant cel

39 We sequenced polyadenylated RNA-derived complementary DNAs from 92 ps

40 he viral genome is a single 7,400-nucleotide polyadenylated RNA encoding 11 proteins in a single open

41 nuclear adaptor that recruits the exosome to polyadenylated RNAs, especially transcripts polyadenylat

42 ntified in a screen for strains defective in polyadenylated RNA export.

43 utated alleles of GLE2 displayed blockage of polyadenylated RNA export; however, nuclear protein impo

44 Electrophoretic analysis of polyadenylated RNA, followed by transfer to nitrocellulo

45 tation of the NES in Gle1 prevents export of polyadenylated RNA from the nucleus.

46 generation sequencing to analyze and compare polyadenylated RNAs from abortive MOCV infections of sev

47 Picornaviruses have 3' polyadenylated RNA genomes, but the mechanisms by which

48 NA processing intermediates and suggest that polyadenylated RNAs have low stability in plants.

49 inhibited chromatin and chromatin-associated polyadenylated RNA identified altered binding of many pr

50 that SRp20 and 9G8 can be UV cross-linked to polyadenylated RNA in both the nucleus and cytoplasm of

51 fractions, with some genes maintaining more polyadenylated RNA in chromatin than in the cytoplasm.

52 s and is able to reduce the m(6)A/A level of polyadenylated RNA in MOLM-13 (acute myeloid leukemia) a

53 tes, was coincident with the accumulation of polyadenylated RNA in the nucleus.

54 BP significantly reduces both its binding to polyadenylated RNA in vivo and its ability to prevent de

55 Taken together with the low abundance of polyadenylated RNAs in maize mitochondria, our results a

56 Proteins bound to polyadenylated RNAs in primary cultures of undifferentia

57 tochondria, where they are directly bound to polyadenylated RNAs in vivo.

58 nantly in the nucleus and is associated with polyadenylated RNAs in vivo.

59 whether such regulation also extends to non-polyadenylated RNAs is unknown.

60 DNA molecules that had been synthesized from polyadenylated RNA isolated from 3-week-old plants.

61 The cDNA library was constructed from polyadenylated RNA isolated from the suppressed UACC-903

62 cterized an abundant late 1.7-kb cytoplasmic polyadenylated RNA (L1.7 RNA) transcribed from the bovin

63 APII binding and increased nuclear RNA, with polyadenylated RNA levels only elevated after prolonged

64 associations of human nuclear and cytosolic polyadenylated RNAs longer than 200 nucleotides (nt) and

65 TERA-Seq describes both poly- and non-polyadenylated RNA molecules and accurately identifies t

66 e been constructed with the use of cytosolic polyadenylated RNA obtained from 11 human cell lines.

67 entary DNA samples, reverse-transcribed from polyadenylated RNA obtained from human liver tissue.

68 short (14 base) expressed sequence tags from polyadenylated RNA obtained from vastus lateralis muscle

69 Finally, we demonstrate that degradation of polyadenylated RNAs occurs in the 3' to 5' direction thr

70 Furthermore, a polyadenylated RNA of 1.4 kb was identified downstream o

71 A polyadenylated RNA of 3.0 kb (T3.0) is transcribed from

72 with complementary DNAs transcribed from the polyadenylated RNAs of a variety of normal and neoplasti

73 n of 32P-labelled cDNAs synthesized from the polyadenylated RNAs of the white blood cells from patien

74 ination of nonpolyadenylated as well as some polyadenylated RNA polymerase II transcripts.

75 sequencing, to determine the 5' ends of the polyadenylated RNAs produced during HDV genome replicati

76 can be polyadenylated in vitro, and similar polyadenylated RNA products are detectable in vivo.

77 two transcripts, 1.3 and 1.1 kb in size, in polyadenylated RNA purified from leaf tissues of mature,

78 Formation of the 3' end of these non-polyadenylated RNAs requires a specialized 3' box elemen

79 This transcription is observed in polyadenylated RNA samples and appears to be derived fro

80 r more limitations, such as focusing only on polyadenylated RNA, sequencing of only the 3' end of the

81 Inhibitor-free, genome-wide analysis of polyadenylated RNA stability via 5-EU pulse-chase experi

82 A elements are crucial for the regulation of polyadenylated RNA stability.

83 degrades polyadenylated as compared with non-polyadenylated RNA substrates corresponding to the 3' UT

84 cell cytoplasmic S100 extracts and exogenous polyadenylated RNA substrates that reproduces regulated

85 toplasm after its nuclear export, to degrade polyadenylated RNAs, such as mRNAs, pre-mRNAs, or those

86 rved regions of the genome and include small polyadenylated RNAs (T0.7 and T1.1) as well as most of t

87 ughput method for reliable identification of polyadenylated RNA termini, and we apply this method, ca

88 referred to as the antigenome, and an 800-nt polyadenylated RNA that could act as the mRNA for the de

89 rine Upregulated Gene 1 (TUG1) is a spliced, polyadenylated RNA that does not encode any open reading

90 is-1 gene is expressed as a 3-kb spliced and polyadenylated RNA that is believed to function in the a

91 We used deep sequencing of polyadenylated RNA to map the transcriptomes of the mega

92 trated that XTUT7 repressed translation of a polyadenylated RNA, to which it added a distinct number

93 quantification of the full range of cellular polyadenylated RNA transcripts using a Helicos Genetic A

94 Because RBDmap relies on the isolation of polyadenylated RNA via oligo(dT), it will not provide RN

95 The nuclear/cytoplasmic (n/c) ratio of polyadenylated RNAs was 3.8, while the n/c ratio for rib

96 Non-coding non-polyadenylated RNAs were among the key Hox targets, with

97 Men epsilon is a 3.2-kb polyadenylated RNA, whereas Men beta is an approximately

98 however, on capturing proteins associated to polyadenylated RNAs which neglects RBPs bound to non-ade

99 The mouse His-1 gene encodes a spliced and polyadenylated RNA with no long open reading frame (ORF)

100 number that gave rise to heterogeneous Trf4p-polyadenylated RNAs with lengths of approximately 250-50

101 In addition, sar1 sar3 plants accumulate polyadenylated RNA within the nucleus, indicating that S