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1 up as the network histidine residues become protonated.
2 100-200 ns before the proton-loading site is protonated.
3 ated, whereas plastoquinone B is reduced and protonated.
4 tion (~1%), is only accessible when GLUex is protonated.
5 his ground-state photo-intermediate as being protonated.
6 dic environments in which C-termini are also protonated.
9 iginates from a 1,2-alkyl rearrangement of a protonated 3,3'-spiroindolenine was isolated and charact
11 Calculated electronic absorptions for the protonated (356 nm) and neutral species (440 nm) are in
13 situation was observed for a multiply folded protonated 8 + 8 macrocycle which binds six sulfate anio
14 molog, but by proton return from the earlier protonated acceptor, preventing vectorial proton translo
19 parameters such as solvent, temperature, or protonating agent were examined as well as protecting gr
21 w strategy that involves the use of chiral N-protonated alkenyl oxazaborolidines as dieneophiles.
22 nplanar bridged lactams to directly access N-protonated amide bonds, (2) validates the use of the add
24 electrophile is activated by the catalyst's protonated amine and that the nucleophile binds to the t
26 cleavage of H2, Mo hydride complexes bearing protonated amines, [CpMo(H)(CO)(P2N2H)](+), were charact
28 C-S bond formation and instead suggest that protonated aminomethyl functions as an electron-withdraw
29 resent an algorithm based on the sodiated to protonated/ammoniated adduct ion ratios of applied inter
31 s did not take into account fragmentation of protonated analyte molecules, which introduced a small b
33 ied solvent additives favor the formation of protonated and ammoniated ions in positive ion mode, yet
34 Under acidic conditions, when His(12) is protonated and charged, the GWALP23-H12 helix exhibits a
35 were obtained and characterized by UV-vis in protonated and deprotonated forms by reduction of previo
36 Ci1 retains a pK(a) of 7.6 so that both its protonated and deprotonated forms equilibrate at physiol
37 trates a promising method to distinguish the protonated and deprotonated ions of metabolites from the
38 n from PFOA, we investigated reactions using protonated and deprotonated species of PFOA and SO(4)(*-
39 ional energies of all analogues, in both the protonated and deprotonated species, were explored by us
42 g finding is that the central carbon becomes protonated and has to move out of the cavity as a methyl
43 r histidines with two of the four histidines protonated and if other titratable amino acid residues i
44 Phase transfer occurs by dynamic assembly of protonated and neutral amides with [AuCl4 ](-) ions thro
45 ase transition in polycrystalline samples of protonated and partially deuterated [FeL(2) ][BF(4) ](2)
46 charged thiolate state and His(41) is doubly protonated and positively charged, instead of the neutra
48 GFP-like protein LEA, involving semi-trapped protonated and trapped deprotonated chromophores en rout
49 , an entropically favored form with tyrosine protonated and unbound from the Cu(II) site, and an enth
50 vestigated, and Raman bands belonging to the protonated and unprotonated forms of the isoquinoline ri
51 r, under acidic conditions E623 is partially protonated and works synergistically with intracellular
52 rotonation), low pH (acidic residues and His protonated), and highly acidic environments in which C-t
55 M triflic acid/dichloroethane, anthracene is protonated at C9, and the resulting 9-anthracenium ion i
57 cyclohexadienes: In solution, it selectively protonates at the ortho position, and the resulting eta(
58 -transfer reactions involving highly acidic, protonated atmospheric molecules, such as nitrogen and w
60 icities (GB, DeltaG for deprotonation of the protonated base) and proton affinities (PA, DeltaH for d
61 inities (PA, DeltaH for deprotonation of the protonated base) of six lipids representing common phosp
62 e the ability of intact CA to quantitatively protonate bases with biologically-relevant pK(a)s and ar
63 erimental studies using two UCST-type TRILs, protonated betaine bis(trifluoromethyl sulfonyl)imide ([
64 contain both mononuclear [MOH](+) and double protonated binuclear metal clusters [M(mu-OH)(2)M](2+) (
66 decarboxylation the enolate intermediate is protonated by a histidine preventing CO(2)-enolate recom
68 imensional structure of cryogenically cooled protonated C-terminally methyl esterified leucine enkeph
70 analysis also revealed the absence of other protonated carbon-containing components that would affec
73 yl radicals have been observed both in their protonated cation form and in their unprotonated neutral
75 pending on the counterion, O-protonated or N-protonated cations can be formed, in accord with theoret
76 excited-state proton transfer (ESPT) of the protonated chromophore, we infer design principles of th
77 through interaction or entrapment of the non-protonated, circular helical (blue) structure of phycocy
79 +)) prior to C-C bond breaking would produce protonated CO2, an energetically inaccessible species th
83 version between a metal-hydride and a ligand-protonated congener using an exogeneous ligand introduce
84 ) in barrier lowering) when the catalyst was protonated, consistent with electrostatic stabilization
88 more stable; both parallel and antiparallel protonated d(GA+A).d(GAA):d(TTC) triplexes are stable.
90 en metal-ion-bound O(2) and its reduced (and protonated) derivatives is critically important for a fu
91 graphic data and DFT calculations support a "protonated diborene" structure for this compound, which
93 tion of monocations, and the generation of C-protonated dications was no longer favored due to the pr
94 nts, and under strongly acidic conditions, C-protonated dications were generated with substantial dia
96 is substituted with an electron withdrawing protonated dimethylamino group at the para position, hyd
97 significant bathochromic shifts observed for protonated dithia-bis(calix)-sapphyrins macrocycles.
99 e report that the gas-phase fragmentation of protonated dityrosine cross-linked peptides under ultrav
100 ects of the cationic Bronsted acid part (the protonated DMAP) in the presence of chloride binding Sch
102 r, the intensity of m/z 154 corresponding to protonated dopamine was monitored before and after elect
107 )ethane), to a highly reactive, S = 1/2 ring-protonated endo-Cp*H-Fe relative, triggered by the addit
108 t CI, CH2OO, is detectable as an adduct with protonated ethers, preferably with protonated tetrahydro
111 hematite is associated with coupled O-Fe and protonated Fe vacancies, providing a potential link betw
114 a) is due to Glu325 (helix X), which must be protonated for LacY to bind galactoside effectively.
115 Superoxide radicals (O2( *-)) and their protonated form (hydroperoxyl radicals, HO2( *)) were de
116 a pre-reactive complex SETD3 binds the N(3)-protonated form (N(3)-H) of actin His73, and in a post-r
118 helical C2-symmetric structure and that its protonated form is the thermodynamic product of the Frie
119 -catalyzed base excision that features an N3-protonated form of caC but would be ineffective for C, m
123 we studied the entrance of O(2) (*-) and its protonated form, perhydroxyl radical [(HO(2) (*)); pK(a)
128 ear-infrared (NIR) absorption in neutral and protonated forms of macrocycles is the important highlig
129 e Escherichia coli proteome from growth on a protonated full medium, over a protonated minimal medium
131 NMR, we show that as [H(+)] is increased to protonate Gluex and enrich the outward-facing state, a r
133 s are in a beta-solenoid conformation with a protonated glutamate residue in their fibrillar core.
134 on content regarding the glycan structure of protonated glycoconjugates is hindered by the inability
136 1)H-based resonance assignments of the fully protonated heptahelical membrane protein proteorhodopsin
139 tro, consistent with deprotonated-Glu214 and protonated-His230 serving as a general base and a genera
140 With three basic nitrogen atoms that can be protonated, Hoechst can exist as cationic and neutral sp
141 dent of whether the nicotine is free-base or protonated, however the liquid vehicle has a strong effe
142 ample of the ionic structure incorporating a protonated hydrazone motif linked to the 1,2,5-oxadiazol
144 iently hydrated when His413 was fixed in its protonated imidazolium state, but its calculated pKa is
146 the periplasmic half-channel is more easily protonated in a manner that halts ATPase-driven rotation
147 nd reduced RsrR, respectively, (ii) His33 is protonated in the In state due to a change in its pK(a)
150 transitions for metaldehyde (177 --> 149 for protonated ion) and atrazine (221 --> 179) were found to
153 the gas-phase reactivity of several isomeric protonated (iso)quinoline- and acridine-based biradicals
154 T studies, cement its assignment as the ring-protonated isomer, [Fe(I)(endo-eta(4)-Cp*H)(dppe)(CO)](+
156 vocal evidence for the formation of the ring-protonated isomers Cp*( exo/ endo-eta(4)-C(5)Me(5)H)Co(+
157 d E286 is likely facilitated for states with protonated K362 and unprotonated E286, which would in pr
160 ions, as is demonstrated by the isolation of protonated l-glutamine and l-lysine (Delta m/z = 0.0364)
161 -fold with no change in K(d) The affinity of protonated LacY for sugar has an apparent pK (pK(app)) o
162 ugh mode, 7x increase in CID sensitivity for protonated leucine enkephalin (m/z 556), and 14x increas
166 ach to rationalizing the reactivity of arene-protonated metal species, using decamethylnickelocene as
169 m growth on a protonated full medium, over a protonated minimal medium, to a completely deuterated mi
170 based on gas-phase ion-molecule reactions of protonated model compounds were successfully conducted a
174 On the basis of relative isotope ratios of protonated molecules and measures of exact masses of for
175 oligo(triazole amide)s were best ionized as protonated molecules and were observed to adopt a single
176 was within 6% for 95% of all CCS values for protonated molecules, resulting in a median relative err
177 mined by monitoring proton transfer from the protonated mono- and biradicals to reference bases with
182 F) spectra included residual intensities for protonated monomers and fragment ions with characteristi
183 single-digit ppt(v) limits of detection for protonated monomers and hundred ppt(v) limits of detecti
184 Mobility isolated spectra were obtained for protonated monomers of 42 volatile oxygen containing org
185 uced fragment ions by water elimination from protonated monomers of alcohols with carbon numbers thre
188 ases by approximately a factor of 7 to 9 for protonated monomers, 10 to 14 for proton-bound dimers, a
189 sed alpha functions for the hydrated proton, protonated monomers, and proton bound dimers with increa
191 nd closely associated LH(+) counter-cations (protonated n-octylamine or tri-n-octylphosphine (TOP) to
195 lly, we demonstrate that the presence of the protonated NH(2) group in sphingosine, which is an amino
200 solutions that contained either free-base or protonated nicotine at 15 mg/g concentration, with a liq
203 many ECIG manufacturers have begun marketing protonated nicotine products, often with high nicotine c
204 ven at -78 degrees C, in the HF/MF5 systems, protonated nitramine MF6(-) salts were isolated for the
205 t the same time, unexpected specifics of the protonated NMe2/-N horizontal line systems consist of a
206 without a significant difference between the protonated (nonionic) or deprotonated (anionic) states.
208 iates are neither edge-protonated nor corner-protonated (normally) but possess "closed" structures me
209 Diglyceride DG(18:1/20:0)-sodium adduct and protonated octadecanamide ions were found to have greatl
210 These results indicate that the majority of protonated octamer observed in mass spectra under previo
212 of levoglucosan and cis-pinonic acid, while protonated oleic acid and 5alpha-cholestane molecules re
213 solid state, depending on the counterion, O-protonated or N-protonated cations can be formed, in acc
215 osecond, MD simulations of the system having protonated or unprotonated cytosines, mimicking the pH 5
217 the fluorescence intensity upon either fully protonating, or deprotonating, the fibrils at pH = 0 or
218 ned from putative APX-II crystals indicate a protonated oxygenic ligand at 1.88 angstrom from the hem
219 n to further increase the relative amount of protonated PAHs, while the introduction of other dopants
220 The interaction prevented conversion into protonated, partially unfolded (green) phycocyanin speci
221 es of the (D)P and (L)P diastereomers in the protonated peptide [YAPAA+H](+), where only intramolecul
222 Therefore, dominant b/y ions upon UVPD of protonated peptides are a strong indicator for the occur
225 alternative via formation of a higher-energy protonated phenyl tautomer (2H(+)) prior to C-C bond bre
226 solutions and in soft source conditions, the protonated phosphate groups are fully back-exchanged in
229 absorption spectroscopy, we characterize its protonated precursor TyrOH(*+), and we show this species
231 asurements between spin-labels on multimeric protonated proteins using double electron-electron reson
232 propylamino)cyclopropenimine-substituted bis-protonated proton sponge as a bifunctional phase-transfe
233 son, the report that a molecule as simple as protonated pyridine (PyH(+)) could catalyze the formatio
235 cals were also found to increase (making the protonated radicals less acidic) as the distance between
236 etinal, and 2) charge separation between the protonated retinal Schiff base (RSBH(+)) and its counter
238 n visible-absorbing rhodopsins, which bind a protonated retinal Schiff base for light absorption, UV-
239 a residue adjacent to Tyr(179), Asp(178), is protonated revealed a conformational change in Pho84 fro
240 d demonstrated that their imine bonds can be protonated reversibly, causing significant protonation-i
241 N(epsilon) and N(delta) recorded in a fully protonated sample with 100 kHz magic-angle spinning.
242 on of a photon, its chromophore, the retinal protonated Schiff base (RPSB), isomerizes from its nativ
243 ween residues E90, E123, D253, N258, and the protonated Schiff base (SBH), as well as nearby residues
244 t redundancy in this system is provided by a protonated Schiff base adduct of retinaldehyde and tauri
245 hat specifically isomerizes the retinylidene protonated Schiff base both thermally and photochemicall
247 by mimicking the intermediate Opsin-derived, protonated Schiff base in the visual cycle with simple p
249 chromophore in opsin visual pigments is the protonated Schiff base of 11-cis-retinaldehyde (11cRAL).
250 elices H5 and H6, while deprotonation of its protonated Schiff's base triggers the rearrangement of t
251 l over the photoisomerization of the retinal protonated Schiff-base in bacteriorhodopsin, isorhodopsi
252 At 100 muM, the population abundance of the protonated serine octamer decreases from 1% to 0.6% from
254 ween the peptide forms present today and the protonated signalling peptides likely to be dominating i
255 caused by residual sulfolane that stabilizes protonated sites on the protruding chains, thereby promo
256 rrogate for cyclic terpenes, are followed as protonated species (CI)H(+) using protonated amines as r
257 n of the metal hydride [1-MH](+) to a ligand protonated species [1-LH](+), from which ligand dissocia
258 of the deprotonated species compared to the protonated species and (ii) stronger electrochemical int
260 ion between the metal-hydride and the ligand protonated species provides a low energy pathway for lig
261 e resolved in another, and epimers merged as protonated species were resolved upon metalation, effect
262 er reduction of the pH results in the doubly protonated species with a high electron-deficiency and L
263 in energy- and time-resolved spectroscopy of protonated species, which leads to a growing demand for
265 (t)BuPy] dependent equilibrium with a ligand protonated square-planar Ir(I) [Ir(N(NN(H))(2))(CO)](+)
266 h the reversible chemical transition between protonated state (NH(+) ) and deprotonated state (N).
267 Surprisingly, one ligand binds to trypsin in protonated state and to thrombin in unprotonated state a
273 ration acts as a nucleophile and attacks the protonated substrate via an outer-sphere mechanism.
274 llowed by hydrogen atom abstraction from the protonated sulfur atom in DMDS by the radical site in th
276 the article, which excludes anionic and most protonated systems, methods associated with measuring th
277 nteractions of the oppositely charged paper (protonated tertiary amine groups) and the anionic groups
280 ne for Calpha deprotonation, His-123 acts to protonate the Ala-enamine intermediate, and Arg-56 facil
281 rbamic acid, which is sufficiently acidic to protonate the reduced Mn species and generate an interme
283 OPC-CoA and Tyr-344 as the general acid that protonates the propionyl-CoA anion following C-C bond cl
287 c acid, alkenes behave as Bronsted bases and protonate to give carbocations which can be trapped by e
288 that a nitrogen-fixing Fe-N2 catalyst can be protonated to form a neutral Fe(NNH2) hydrazido(2-) inte
290 unprecedented two-step mechanism wherein the protonated triradical first transfers a proton to DMDS,
291 e of the highly-conserved catalytic triad is protonated upon 5'-splice-site scission, promoting a rev
292 hexahydro-2H-pyrimido[1,2-a]pyrimidine) were protonated using [HNEt3][BPh4] to afford [I-H][BPh4] (1a
294 (2)O)(19) isotopologue of the "magic number" protonated water cluster, H(+).(H(2)O)(21) The OH group
298 the arene ligand to the point that it can be protonated with a mild Bronsted acid (diphenylammonium t
299 15)N NMR spectra show that the His-27 tetrad protonates with higher pKa values than His-19, indicatin