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1 erythromycin (for isolates not available for pulsed-field gel electrophoresis).
2 erized (mecA confirmation, SCCmec typing and pulsed-field gel electrophoresis).
3 Double-strand DNA damage was detected by pulsed field gel electrophoresis.
4 elonged to 1 of 7 clonal types as defined by pulsed-field gel electrophoresis.
5 The isolates were subtyped by ribotyping and pulsed-field gel electrophoresis.
6 Isolates were typed by pulsed-field gel electrophoresis.
7 IV-negative patients; isolates were typed by pulsed-field gel electrophoresis.
8 dom amplification of polymorphic DNA PCR and pulsed-field gel electrophoresis.
9 llected from 2000 to 2008 were identified by pulsed-field gel electrophoresis.
10 and clonal relationships were determined by pulsed-field gel electrophoresis.
11 eus isolates were unrelated as determined by pulsed-field gel electrophoresis.
12 e the strains by standard techniques such as pulsed-field gel electrophoresis.
13 were identical by biochemical profiling and pulsed-field gel electrophoresis.
14 ns lacking the mre11 gene was observed using pulsed-field gel electrophoresis.
15 paced breaks yield DSBs that are observed by pulsed-field gel electrophoresis.
16 andom-amplified polymorphic DNA analysis and pulsed-field gel electrophoresis.
17 82 isolates, which were indistinguishable by pulsed-field gel electrophoresis.
18 , IL, between 2004 and 2007 were analyzed by pulsed-field gel electrophoresis.
19 striction enzyme and size-fractionated using pulsed-field gel electrophoresis.
20 hat of multilocus sequence typing (MLST) and pulsed-field gel electrophoresis.
21 treatment daptomycin-susceptible isolates by pulsed-field gel electrophoresis.
22 A from PBCV-1-infected cells was examined by pulsed-field gel electrophoresis.
23 Isolates were compared using pulsed-field gel electrophoresis.
24 olonized subjects were initially compared by pulsed-field gel electrophoresis.
25 ant, as determined by infectivity assays and pulsed-field gel electrophoresis.
26 -induced chromosomal DNA damage monitored by pulsed-field gel electrophoresis.
27 ominissuisisolates is easier and faster than pulsed-field gel electrophoresis.
28 sequencing for genospecies and genotyped by pulsed-field gel electrophoresis.
29 oquinolone resistance-determining loci), and pulsed-field gel electrophoresis.
30 yping of the E. coli isolates was done using pulsed-field gel electrophoresis.
31 and clonal relatedness was established using pulsed-field gel electrophoresis.
32 able to more arduous typing systems, such as pulsed-field gel electrophoresis.
33 nly to MRSA isolates that were available for pulsed-field gel electrophoresis, 91% (159 of 175 isolat
44 genetically distant rectal isolate (based on pulsed-field gel electrophoresis analysis) with a profil
50 olates were closely related to each other by pulsed-field gel electrophoresis and contained a common
51 mosomal damage was directly visualized using pulsed-field gel electrophoresis and demonstrated repair
53 he formation of DNA DSBs, as demonstrated by pulsed-field gel electrophoresis and H2AX phosphorylatio
55 mpared with those from the United Kingdom by pulsed-field gel electrophoresis and integron analysis.
56 racterize possible transmission routes using pulsed-field gel electrophoresis and multi-locus variabl
59 ed both environmental and clinical ESBLEC by pulsed-field gel electrophoresis and multilocus sequence
60 to the maximum parsimony trees inferred from pulsed-field gel electrophoresis and multilocus variable
61 ned laboratory characteristics of EAEC using pulsed-field gel electrophoresis and next-generation seq
62 sequence type 94, were indistinguishable by pulsed-field gel electrophoresis and optical mapping, an
63 University Hospital (SUH) were genotyped by pulsed-field gel electrophoresis and PCR for SCCmec and
64 ir proficiency in G0/G1 phase as measured by pulsed-field gel electrophoresis and repair focus resolu
65 performed two band-based typing techniques (pulsed-field gel electrophoresis and repetitive extragen
67 urfaces were evaluated for relatedness using pulsed-field gel electrophoresis and staphylococcal cass
68 al isolates were characterized as CA-MRSA by pulsed-field gel electrophoresis and susceptibility test
72 terization of the 66 isolates was done using pulsed-field gel electrophoresis and whole-genome sequen
73 zed by antimicrobial-susceptibility testing, pulsed-field gel electrophoresis, and detection of toxin
74 chain reaction (PCR) for 31 virulence genes, pulsed-field gel electrophoresis, and multilocus sequenc
75 erwent antimicrobial susceptibility testing, pulsed-field gel electrophoresis, and multiplex PCR for
76 rRNA gene sequence analysis, genotyped using pulsed-field gel electrophoresis, and phenotyped for a r
77 lates utilized multilocus sequence typing or pulsed-field gel electrophoresis, but high-resolution ex
78 ere tested for antimicrobial susceptibility, pulsed-field gel electrophoresis clonal type, toxin gene
79 he induction of cellular DNA breaks based on pulsed field gel electrophoresis, comet analysis, and ga
80 ion of YAC DNA from yeast chromosomal DNA by pulsed field gel electrophoresis, concentration to a ran
82 clinical isolates labeled according to their pulsed-field gel electrophoresis data for strain differe
85 determined by polymerase chain reaction and pulsed-field gel electrophoresis differed from that of B
86 T131 and its ESBL-associated H30Rx subclone, pulsed-field gel electrophoresis, extended virulence gen
87 ts in less than 5 h and, in conjunction with pulsed-field gel electrophoresis, forms a very robust te
89 tularensis isolates by DISA correlated with pulsed-field gel electrophoresis genotyping utilizing tw
91 identify irregular clusters of illness, and pulsed-field gel electrophoresis in conjunction with who
93 Molecular analyses included strain typing by pulsed-field gel electrophoresis, mec and accessory gene
95 testing, sequencing of beta-lactamase genes, pulsed-field gel electrophoresis, multilocus sequence ty
96 at 6 Canadian hospitals underwent typing by pulsed-field gel electrophoresis, multilocus sequence ty
97 to a single genetic clone, as determined by pulsed-field gel electrophoresis, multilocus sequence ty
98 hicillin susceptible) using a combination of pulsed-field gel electrophoresis, multilocus sequence ty
102 tococcus pneumoniae serogroup 35 isolates by pulsed-field gel electrophoresis of the genome and pbp2b
105 hoc analysis using unique pathogens typed by pulsed-field gel electrophoresis, overall success rates
106 m 6 confirmed cases had an indistinguishable pulsed-field gel electrophoresis pattern and belonged to
107 ak-associated E. coli O157:H7 or E. coli O61 pulsed-field gel electrophoresis pattern combinations, o
108 ak-associated E. coli O157:H7 or E. coli O61 pulsed-field gel electrophoresis pattern combinations, o
109 s Typhimurium and Newport that had different pulsed-field gel electrophoresis patterns and in identif
111 ed PCR strategy was used to analyze the AscI pulsed-field gel electrophoresis patterns of Listeria mo
113 d to specific outbreaks and showed identical pulsed-field gel electrophoresis patterns were indisting
114 zed FQ(R) C. coli isolates had similar PFGE (pulsed field gel electrophoresis) patterns and the same
117 on-Valentine leucocidin (PVL) screening, and pulsed field gel electrophoresis (PFGE) were performed t
118 olated in the United States were analyzed by pulsed-field gel electrophoresis (PFGE) after digestion
120 li isolates were compared using phylotyping, pulsed-field gel electrophoresis (PFGE) analysis, sequen
122 itional molecular subtyping methods, such as pulsed-field gel electrophoresis (PFGE) and 7-gene multi
123 Outbreak-related cases were identified by pulsed-field gel electrophoresis (PFGE) and confirmed by
126 -multiplex PCR) typing (SMT) with respect to pulsed-field gel electrophoresis (PFGE) and multilocus s
127 udy compared the discriminatory abilities of pulsed-field gel electrophoresis (PFGE) and multilocus s
128 exists: the two most widely used methods are pulsed-field gel electrophoresis (PFGE) and multilocus s
129 d during the same period were compared using pulsed-field gel electrophoresis (PFGE) and multilocus s
132 le nucleotide polymorphisms (SNPs) than with pulsed-field gel electrophoresis (PFGE) and other method
133 gically evaluable patients were genotyped by pulsed-field gel electrophoresis (PFGE) and PCR for pvl
134 cordance of MLVA were compared with those of pulsed-field gel electrophoresis (PFGE) and phage typing
135 ological and molecular techniques, including pulsed-field gel electrophoresis (PFGE) and plasmid prof
137 ironmental cultures was analyzed by means of pulsed-field gel electrophoresis (PFGE) and typing for r
138 robust molecular genetic approaches, such as pulsed-field gel electrophoresis (PFGE) and whole-genome
139 For evaluating the genotypic diversity, pulsed-field gel electrophoresis (PFGE) and/or enterobac
141 properties, neurotoxin characterization, and pulsed-field gel electrophoresis (PFGE) banding patterns
143 detection, toxinotyping, DNA sequencing, and pulsed-field gel electrophoresis (PFGE) DNA fingerprinti
144 ntification of Salmonella serotypes based on pulsed-field gel electrophoresis (PFGE) fingerprints.
145 d H. haemolyticus isolates were genotyped by pulsed-field gel electrophoresis (PFGE) following SmaI o
146 tandard method of SmaI restriction digestion pulsed-field gel electrophoresis (PFGE) for typing S. au
147 CR analysis for the spvA virulence gene, and pulsed-field gel electrophoresis (PFGE) genotyping were
157 AC) lung disease, but the "gold standard" of pulsed-field gel electrophoresis (PFGE) is time-consumin
158 S. pneumoniae isolates by using two methods: pulsed-field gel electrophoresis (PFGE) of SmaI-digested
159 strain is often determined by comparing its pulsed-field gel electrophoresis (PFGE) or multilocus se
160 solution, and it can be directly analyzed by pulsed-field gel electrophoresis (PFGE) or used in appli
161 tered to the patients, grew P. putida with a pulsed-field gel electrophoresis (PFGE) pattern identica
166 lla serovar Typhimurium DT104 with different pulsed-field gel electrophoresis (PFGE) profiles were an
171 patient was positive and molecular typing by pulsed-field gel electrophoresis (PFGE) revealed clonal
172 eparating XbaI-restricted chromosomal DNA by pulsed-field gel electrophoresis (PFGE) separation.
173 coli cases with an indistinguishable, novel pulsed-field gel electrophoresis (PFGE) subtyping patter
176 ns, multilocus sequencing typing (MLST), and pulsed-field gel electrophoresis (PFGE) to molecularly c
177 nfection in the United States and to compare pulsed-field gel electrophoresis (PFGE) to the combinati
178 ts were used to investigate L. monocytogenes pulsed-field gel electrophoresis (PFGE) type diversity.
180 LVA) for Staphylococcus aureus could predict pulsed-field gel electrophoresis (PFGE) types (i.e., USA
187 ction analysis of genomic DNA using SmaI and pulsed-field gel electrophoresis (PFGE) were both used t
188 Antimicrobial susceptibility testing and pulsed-field gel electrophoresis (PFGE) were performed f
189 Antimicrobial susceptibility testing and pulsed-field gel electrophoresis (PFGE) were performed o
190 stigated the use of whole-genome mapping and pulsed-field gel electrophoresis (PFGE) with isolates fr
195 hat can be performed within a clinical lab), pulsed-field gel electrophoresis (PFGE), and an antibiot
196 in, using multilocus sequence typing (MLST), pulsed-field gel electrophoresis (PFGE), and array-based
197 dom amplification of polymorphic DNA (RAPD), pulsed-field gel electrophoresis (PFGE), and DNA-DNA hyb
198 otyped by repetitive-sequence PCR (rep-PCR), pulsed-field gel electrophoresis (PFGE), and multilocus
199 sing surface protein profile identification, pulsed-field gel electrophoresis (PFGE), and multilocus
201 acterial artificial chromosome (BAC) clones, pulsed-field gel electrophoresis (PFGE), and public arra
202 Typing was performed by PCR-ribotyping, pulsed-field gel electrophoresis (PFGE), and restriction
203 tine leukocidin (PVL) screening, and SCCmec, pulsed-field gel electrophoresis (PFGE), and spa typing.
204 by restriction-endonuclease analysis (REA), pulsed-field gel electrophoresis (PFGE), and toxinotypin
205 erase chain reaction (PCR) detection of GES, pulsed-field gel electrophoresis (PFGE), and WGS for the
206 d thus further characterized by MLST typing, pulsed-field gel electrophoresis (PFGE), and whole genom
208 Currently, the standard typing technique, pulsed-field gel electrophoresis (PFGE), is laborious an
209 acter databases at the CDC and the FDA using pulsed-field gel electrophoresis (PFGE), multilocus sequ
210 nrelated to prevalent MRSA, as determined by pulsed-field gel electrophoresis (PFGE), multilocus sequ
211 -producing isolates were determined by using pulsed-field gel electrophoresis (PFGE), multilocus sequ
213 late characterisation included toxinotyping, pulsed-field gel electrophoresis (PFGE), PCR ribotyping,
214 March 2014) included Western blot analysis, pulsed-field gel electrophoresis (PFGE), polymerase chai
215 rived food products were characterized using pulsed-field gel electrophoresis (PFGE), repetitive elem
217 isolate and all MRSA isolates were typed by pulsed-field gel electrophoresis (PFGE), screened for mu
218 pneumonia, we analyzed 24 paired isolates by pulsed-field gel electrophoresis (PFGE), serotyping, and
219 cal cassette chromosome mec (SCCmec) typing, pulsed-field gel electrophoresis (PFGE), spa typing, and
221 relatedness of isolates was determined using pulsed-field gel electrophoresis (PFGE), Staphylococcus
224 revious molecular subtyping methods, such as pulsed-field gel electrophoresis (PFGE), were critical i
225 h were indistinguishable from one another by pulsed-field gel electrophoresis (PFGE), were obtained f
226 repetitive-sequence-based PCR (rep-PCR) and pulsed-field gel electrophoresis (PFGE), which showed th
227 Salmonella serotype Typhi, as determined by pulsed-field gel electrophoresis (PFGE), with onset duri
228 uded multiple representatives of a number of pulsed-field gel electrophoresis (PFGE)-defined types.
261 dvantages over length-based methods, such as pulsed-field gel electrophoresis (PFGE); however, conven
264 ethod for determining bacterial relatedness (pulsed-field gel electrophoresis [PFGE]) remains essenti
265 ication using restriction digest technology (pulsed-field gel electrophoresis [PFGE]) to shotgun sequ
266 T to those of other means (traditional MLST, pulsed-field gel electrophoresis [PFGE], and single-nucl
267 f four molecular typing methods (ribotyping, pulsed-field gel electrophoresis [PFGE], random amplific
271 ilution, and selected isolates were typed by pulsed-field gel electrophoresis, repetitive sequence-ba
273 ut included (uniquely) K1 capsule and fimH64 Pulsed-field gel electrophoresis separated ST1193-H64 is
275 ates were evaluated for the MRSA genotype by pulsed-field gel electrophoresis, staphylococcal protein
277 reased age and infection with North American pulsed-field gel electrophoresis strains were associated
278 (n = 92) were characterized by toxinotyping, pulsed-field gel electrophoresis, tcdC and cdtB PCR, and
280 Montevideo infections with a rare pattern on pulsed-field gel electrophoresis (the outbreak strain) w
281 icile isolates (n = 31) was also analyzed by pulsed-field gel electrophoresis to determine the circul
282 leukocidin (PVL) cytotoxin genes, belongs to pulsed field gel electrophoresis type USA300 and multilo
283 the fluoroquinolone-resistant North American pulsed-field gel electrophoresis type 1 (NAP1) strain in
285 table strain of Staphylococcus aureus with a pulsed-field gel electrophoresis type of USA300 and mult
286 ST-1-positive strains isolated, 6 (50%) were pulsed-field gel electrophoresis type USA200, multilocus
287 solates with chromosomal deletions, multiple pulsed-field gel electrophoresis types were identified,
293 release of monomeric genomes as assessed by pulsed-field gel electrophoresis was greatly diminished,
299 ee strains appeared to be clonal by standard pulsed-field gel electrophoresis, whole-genome sequencin
300 a single strain by Automated RiboPrinter and pulsed-field gel electrophoresis with ApaI or SmaI diges