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1 ic metallohelices with human telomeric RNA G-quadruplex.
2 proton T(1) values for a water-soluble DNA G-quadruplex.
3 al spectra for several proteins and an RNA G-quadruplex.
4 folding and unfolding rates in nucleic acid quadruplexes.
5 le exons that contain splice site-proximal G-quadruplexes.
6 le secondary structures such as hairpins and quadruplexes.
7 o switch between inter- and intramolecular G-quadruplexes.
8 metabolites and functionality of the bound G-quadruplexes.
9 ve largely been considered distinct types of quadruplexes.
10 through RNA secondary structures known as G-Quadruplexes.
11 ns do not preferentially interact with DNA G-quadruplexes.
12 pical B-form DNA to single-stranded DNA to G-quadruplexes.
13 ned to two stacked parallel and antiparallel quadruplexes.
14 ion of, and replication through, telomeric G-quadruplexes.
15 is a 31-nt DNA aptamer, consisting of the G-quadruplex and a duplex domain, which is able to effecti
18 tructure-forming sequences, exemplified by G quadruplex and H-DNA motifs, across the genome in both a
19 d RGG box-dependent binding to the SC1 RNA G-Quadruplex and is required for outgrowth of neurites.
20 specificity is increased by targeting both G-quadruplex and its flanking duplex DNA in a naturally oc
21 ctures of (i) Pseudorabies virus (PRV) RNA G-quadruplex and ligand complex, (ii) PRV DNA G-quadruplex
23 ith a high affinity to human telomeric RNA G-quadruplex and that their binding selectivity considerab
24 The modified 40-nt aptamer, with a stable G-quadruplex and two modified loops, exhibited a 100 times
27 cells, proved to be able to stabilize both G-quadruplexes and R loops and showed a potent cell killin
28 GG domain of FMRP as important for binding G-quadruplexes and the transport of G-quadruplex-containin
31 uadruplex and ligand complex, (ii) PRV DNA G-quadruplex, and (iii) an i-motif of human telomeric sequ
35 any conformational form of human telomeric G-quadruplex (antiparallel, hybrid, parallel monomers or a
36 assay for HBeAg, which takes advantage of G-quadruplex aptamers for enhanced binding and stability.
45 e-wide role in MiDAS at loci prone to form G-quadruplex-associated R-loops, in a process that is depe
46 o guanine electron donors into crystalline G-quadruplex-based organic frameworks, wherein the electro
47 romising and desirable features to develop G-quadruplex binders as safe and effective anticancer agen
48 In the search for new drug-like selective G-quadruplex binders, a bioinspired design focused on the
50 We find that the DSM not only functions as a quadruplex binding adaptor but also promotes the remodel
51 ries finds that the Timeless protein has a G-quadruplex binding domain that works together with the D
57 cal property of individual human telomeric G-quadruplexes bound to telomestatin, using optical tweeze
58 olve DNA synthesis: DNA replication across G-quadruplexes; break-induced replication; and processing
59 mers or a 48 nt sequence with two contiguous quadruplexes), but did not avidly interact with duplex D
60 ands have been reported that bind to dimeric quadruplexes, but their preclinical pharmacological eval
61 can dramatically simplify the depiction of G-quadruplexes by automatically detecting G-tetrads and tr
63 ssays, we show for the first time that these quadruplexes cannot be analyzed independently, but they
65 affinity to the immobilized aptamer, the MB/quadruplex complex broke and MB washed away from the apt
66 ltered mechanical anisotropy of the ligand-G-quadruplex complex can add additional level of regulatio
68 rvation that NONO preferentially binds the G-quadruplex conformation of G-rich C9orf72 repeat RNA, we
77 G-quadruplex motifs, and treatment with a G-quadruplex-disrupting small molecule causing dissociatio
78 selectivity, and induced the formation of G-quadruplex DNA along with the related DNA damage respons
79 moter activity of c-MYC gene that contains G-quadruplex DNA forming sequence in the upstream promoter
80 op a competitive screening method in which G-quadruplex DNA linked magnetic nanoparticles pull down s
88 tic and biochemical analyses show that RNA G-quadruplex folding is able to regulate translation and m
92 approach allows separation of K(+)-induced G-quadruplex formation and subsequent refolding and provid
93 stabilization of RNA sequences capable of G-quadruplex formation by metallohelices investigated in t
96 n GTEx, suggesting that variants affecting G-quadruplex formation within UTRs may also contribute to
98 ibe not only the basic structural motif of G-quadruplexes formed by, e.g., telomeric DNA sequences, b
99 dihydroguanine ((oxo)G), and evaluated the G-quadruplex forming ability of such oligonucleotides.
100 vely edited (pan-edited) transcripts contain quadruplex forming guanine stretches, which must be remo
101 The structure of the 68 nt sequence with G-quadruplex forming potential within the hTERT promoter i
102 confirmed their binding to pseudoknot and G-quadruplex forming RNAs as well as their ability to regu
104 ic and genomic data, we show that putative G-quadruplex forming sequences (pG4) in 5' and 3' UTRs are
107 an in vitro assay, we show that a putative G-quadruplex-forming sequence (PQFS) in the first intron o
108 -rich promoter element that is a potential G-quadruplex-forming sequence (PQS) in NEIL3 is a site for
110 xperiments have identified a non-canonical G-quadruplex-forming sequence containing bulges within the
111 porphyrin dyes are first attached to short G-quadruplex-forming sequences and then reacted with per-O
112 tiple sequence alignments, we observe that G-quadruplex-forming sequences are a general feature of LS
117 d that VEZF1 binds directly with DNA guanine quadruplex (G quadruplex, G4) structures in vitro and in
118 icing enhancer motifs and a propensity for G-quadruplex (G-Q) formation, linking the defective splici
121 viously showed that CST binds and disrupts G-quadruplex (G4) DNA in vitro, suggesting that CST may pr
129 structural transition of the sequence to a G-quadruplex (G4) fold that positions the AP in a loop fac
130 oxidation sensitivity and a propensity for G-quadruplex (G4) folding, both of which depend upon seque
132 Here, we examined the contribution of G-quadruplex (G4) nucleic acid structures to AID targeting
137 ensity to adopt four-stranded tetrahelical G-quadruplex (G4) structures that are overrepresented in g
138 (G), but G-rich DNA can form four-stranded G-quadruplex (G4) structures, which plays important roles
147 Guanine-rich oligonucleotides can form G-quadruplexes (G4), which are stabilized by the hydrogen
151 inds directly with DNA guanine quadruplex (G quadruplex, G4) structures in vitro and in cells, which
152 Noncanonical tetrahelical nucleic acids, G-quadruplexes (G4Q), and i-motifs have been shown to play
162 ow exists to support that formation of DNA G-quadruplexes (G4s) is coupled to altered gene expression
166 ich telomere DNA repeats readily fold into G-quadruplex (GQ) structures in vitro, and the presence of
168 biophysical characterization of folding of G-Quadruplex (GQ)-based light-up aptamers such as Spinach,
173 n fold into noncanonical structures called G-quadruplexes (GQs), which exhibit a common stem structur
176 assembled nucleobases, such as G-quartets or quadruplexes, have numerous applications, but light-resp
178 anthrene, dppz=dipyridophenazine) bind DNA G-quadruplex in an enantiospecific manner that parallels t
181 Our study reveals the existence of RNA G-quadruplex in vivo and indicates that RNA G-quadruplex s
187 for further investigation into the role of G-quadruplexes in paraspeckle formation and function.
192 icational or co-transcriptional folding of G-quadruplex inside the polymerase machinery in cells.
194 ligands and then used with a new series of G-quadruplex interactive bis-triazolyl ligands that are sy
196 he complex folding energy landscape of DNA G-quadruplexes leads to numerous conformations for this fu
198 basis for the retention of potency by this G-quadruplex ligand has been examined using whole transcri
199 g agents, and that the cytotoxicity of the G-quadruplex ligand pyridostatin involves trapping topoiso
200 d the identification of a highly selective G-quadruplex ligand that, when studied in human cancer cel
203 ing strategy is first optimized with known G-quadruplex ligands and then used with a new series of G-
206 As that have structured 5' UTRs (including G-quadruplexes), many of which are involved in signal tran
207 s such as gold (Au)-carbene that stabilize G-quadruplexes may also interfere with the elongation of t
208 of G-rich C9orf72 repeat RNA, we find that G-quadruplex motifs are abundant and conserved features of
209 ural specificity and provide evidence that G-quadruplex motifs mediate NONO-NEAT1 association, with N
210 ng sites on NEAT1 corresponding largely to G-quadruplex motifs, and treatment with a G-quadruplex-dis
211 lidated TRF2 occupancy at several promoter G-quadruplex motifs, which did adopt quadruplex forms in s
212 on binding as a doublet to one side of the G-quadruplex, much larger translational and orientational
213 nd, BMPQ-1, which bound to human telomeric G-quadruplex multimers over monomeric G-quadruplexes with
214 ses occurring at specific locations within G-quadruplex nucleic acids, providing valuable probes for
217 al features of the experimentally observed G-quadruplexes (OQs), highlighting differences in their pr
218 r the work was limited to the colorimetric G-quadruplex or fluorescent substrate cleaving NAzymes.
219 RNA, double-helical DNA, Pauling triplex, G-quadruplex, or DNA structures 'decorated' with proteins.
220 s introduced in differentiating multimeric G-quadruplexes over monomeric species, which would be able
221 grooves of the Oxytricha nova's telomeres' G-quadruplex ( Oxy-GQ), in agreement with high-resolution
222 imilar size have the capability of binding G-quadruplexes, potentially affecting the expression of th
223 gest that genetic variation is enriched in G-quadruplex regions that impede mitochondrial DNA replica
225 ally in syn or anti in nonsubstituted hTel G-quadruplex requires a minor structural rearrangement or
226 aeline as small molecules that disrupt RNA G-quadruplexes, resulting in inhibition of G-quadruplex-de
227 copy reveals that excitation of TDI in the G-quadruplex results in symmetry-breaking charge separatio
228 eveals different binding landscapes of RNA G-quadruplex (rG4) structures-binding proteins and discove
231 three-layered intramolecular (3+1) hybrid G-quadruplex scaffold, in which three strands are oriented
232 ss this question, we studied two different G-quadruplexes, selecting a single conformation by blockin
233 ables the identification of c-MYC and BCL2 G-quadruplex selective bis-triazole ligands that specifica
234 these transcripts contain an enrichment of G-quadruplex sequences in their 3' UTRs, suggesting that F
235 differentiates many widely accepted putative quadruplex sequences that do not actually form stable ge
236 Herein, we employ an improved version of a G-quadruplex sequencing method (G4-seq) to generate whole
237 results are supportive of the concept that G-quadruplex small molecules such as CM03 have potential f
240 CCAGGCTGCAA), that self-associates to form a quadruplex structure containing two central antiparallel
244 nding of POT1 to an initially folded 24 nt G-quadruplex structure is four orders of magnitude slower.
246 self-assembles into a nearly monodisperse G-quadruplex structure of 16 layers, with strong pai-overl
247 n FMRP binds with a high affinity to an RNAG-quadruplex structure that lacks single-stranded loops, d
248 ing capability caused by (oxo)G, a loss of G-quadruplex structure was observed for most oligonucleoti
249 ve chemical targeting of the non-canonical G-quadruplex structure within the PARP1 promoter, which co
250 wo complexes, both comprised of a (4n - 1) G-quadruplex structure, one bound to a linear dinucleotide
256 -quadruplex in vivo and indicates that RNA G-quadruplex structures act as important regulators of pla
257 es of a lead which was proved to stabilize G-quadruplex structures and increase R loop levels in huma
261 ofiling, we determine that hundreds of RNA G-quadruplex structures are strongly folded in both Arabid
275 ey also demonstrated a strong and specific G-quadruplex targeting strategy by conjugating highly spec
276 elective artificial nucleases that degrade G-quadruplex telomeric DNA and exhibit selective DNA bindi
278 LOTUS domains exhibit high affinity to RNA G-quadruplex tertiary structures implicated in diverse cel
279 irpin (HP) probes, molecular beacons, and G- quadruplex) that mediate cyclic cascade and role of help
280 pull down selective ligands for a particular quadruplex topology from a series of small molecules.
281 the conformational ensemble of multimeric G-quadruplexes towards (3+1) hybrid-2 topology, which beca
283 at includes equilibrium constants for both G-quadruplex unfolding and POT1 binding to the resultant s
284 udies showed that POT1 binding is coupled to quadruplex unfolding, with a final complex with a stoich
286 4 domains have been studied mainly as single quadruplex units derived from short truncated sequences
287 es a structure with three stacked parallel G-quadruplex units, while another features an unusual dupl
288 enous ribonucleoprotein A1 (hnRNP A1) as a G-quadruplex-unwinding helicase, which unfolds these stabl
291 dentified lead compound exhibits significant quadruplex versus duplex DNA selectivity and suppresses
292 eta gene promoter sequence forms a vacancy G-quadruplex (vG4) which can be filled in and stabilized b
293 lecular mechanism of Au-carbene binding to G-quadruplexes, we employed molecular dynamics simulations
294 much emphasis has been recently given to DNA quadruplexes, we focused here on three-way DNA junctions
295 rad planes changes the conformation of the G-quadruplex, which resembles a balloon squeezed in certai
297 owever, the design of probes recognizing a G-quadruplex with high selectivity in vitro and in vivo re
298 eric G-quadruplex multimers over monomeric G-quadruplexes with high selectivity, and induced the form
299 ermore, we determine that NONO binds NEAT1 G-quadruplexes with structural specificity and provide evi