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1 4-subunit enzyme that solely transcribes pre-ribosomal RNA.
2 es to pseudouridine in small nuclear RNA and ribosomal RNA.
3 pulation with the G2376C mutation in the 23S ribosomal RNA.
4 ablishes idiosyncratic interactions with the ribosomal RNA.
5 -generation sequencing targeting 16S and 18S ribosomal RNA.
6 atalyse the site-specific 2-O-methylation of ribosomal RNA.
7 s measured by metagenomic sequencing and 16s ribosomal RNA.
8 such as the structure and maturation of its ribosomal RNA.
9 ansport chain and a full set of transfer and ribosomal RNAs.
10 ins, and defective processing of chloroplast ribosomal RNAs.
11 ient enzyme specialized in synthesizing most ribosomal RNAs.
13 , DNA-directed RNA polymerase II (RPB2), 18S ribosomal RNA (18S), 28S ribosomal RNA (28S) across diff
15 rase II (RPB2), 18S ribosomal RNA (18S), 28S ribosomal RNA (28S) across different developmental stage
16 l richness, we analyzed over 1.7 billion 16S ribosomal RNA amplicon sequences in the V4 hypervariable
17 sition and functions were assessed using 16S ribosomal RNA amplicon sequencing and metagenomic shotgu
22 ogenome contained 13 protein coding genes, 2 ribosomal RNA and 22 transfer RNA genes, and a control r
23 partments-nucleoli, where it associates with ribosomal RNA and is required for efficient separation o
24 stilled water, extracted total RNA, depleted ribosomal RNA and performed whole-transcriptome RT-seque
26 Virgin Islands, amplifying the large-subunit ribosomal RNA and psbA protein D1 marker genes, revealed
27 synthesize the proteins of a cell, comprise ribosomal RNA and ribosomal proteins, which coassemble h
30 nomic units were pyrosequenced targeting 16S ribosomal RNA and volatile organic compounds determined
33 y recently the role of its basic components, ribosomal RNAs and proteins, in translational control ha
35 s that are peculiar to specific positions in ribosomal RNAs and that are stabilized by tertiary inter
36 occus were assessed by DNA sequencing of 16S ribosomal RNA, and absolute S. aureus abundance was meas
37 n a eukaryotic-specific pocket formed by 28S ribosomal RNA, and alters the path of the nascent polype
38 narily widespread regulatory function beyond ribosomal RNA, and that they are often autoregulatory.
39 cted database growth, submission wizards for ribosomal RNA, and the transfer of Expressed Sequence Ta
40 t, an exuberant fraction of reads mapping to ribosomal RNA, and the unstranded nature of the sequenci
41 uence families in that database (16S and 23S Ribosomal RNAs), as well as improved accuracies for long
42 s is initiated with the transcription of pre-ribosomal RNA at the 5' external transcribed spacer, whi
44 nities in fecal samples were profiled by 16S ribosomal RNA-based polymerase chain reaction-temporal t
48 tic analyses of sequences of the partial 18S ribosomal RNA, D2-D3 of 28S rRNA, internal transcribed s
49 ical technique, allowed us to reduce the 16S ribosomal RNA data complexity into a microbial signature
50 The probe incorporated into the bacterial ribosomal RNA decoding site, fluorescently reports antib
51 complete nuclear transcriptome, including a ribosomal RNA degradation procedure that minimizes pre-r
52 cRNA expression from both simulated and real ribosomal RNA-depleted (rRNA-depleted) RNA-seq datasets.
55 (such as tRNA-derived small RNAs, microRNAs, ribosomal RNA-derived small RNAs and long non-coding RNA
58 internal transcribed spacer region of fungal ribosomal RNA encoding genes demonstrated consistent and
61 to the most-likely IDs, (iii) comprehensive ribosomal RNA filtering for accurate mapping of exogenou
62 emistry to detect mucin 2, as well as by 16S ribosomal RNA fluorescence in situ hybridization, transc
67 o evaluate the diagnostic performance of 16S ribosomal RNA gene (rRNA) polymerase chain reaction (PCR
69 12 and laboratory tests were performed; 16S ribosomal RNA gene (V4V5) sequencing was performed on st
71 n of fecal microbiota were determined by 16S ribosomal RNA gene amplicon sequencing, and metabolite p
78 and fecal samples were analyzed by both 16S ribosomal RNA gene and transcript amplicon sequencing; 2
79 By applying metabolomic and metagenomic (16S ribosomal RNA gene and whole-genome shotgun sequencing)
80 on was identified with sequencing of the 16S ribosomal RNA gene in breast milk, areolar skin, and inf
82 lysis, have been developed to detect the 23S ribosomal RNA gene mutations that confer resistance to a
87 global-sampling effort, we analysed the 16S ribosomal RNA gene sequences from ~1,200 activated sludg
88 xonomic units, enable bacterial and archaeal ribosomal RNA gene sequences to be followed across multi
91 Feces were collected and analyzed by 16S ribosomal RNA gene sequencing and bacterial community an
93 lysis of fecal microbiota composition by 16S ribosomal RNA gene sequencing and fecal/urinary metaboli
94 Various approaches, including bacterial 16S ribosomal RNA gene sequencing and metagenomic shotgun se
106 the intestinal microbiota by culture and 16S ribosomal RNA gene sequencing.Among the 3161 enrolled pr
107 on day 1 and week 12 and profiled using 16S ribosomal RNA gene sequencing; 122 patients had paired s
108 ntitative polymerase chain reaction, and 16S ribosomal RNA gene sequencing; lamina propria and mesent
111 ranscribed spacer 2 and the D2 region of 28S ribosomal RNA gene were sequenced and fungi identified.
112 ere sequenced using the V4 region of the 16S ribosomal RNA gene with clustering of Gardnerella vagina
115 -cell diversity of the usually conserved 16S ribosomal RNA gene, we suggest that gene conversion occu
127 hibitor of RNA polymerase I transcription of ribosomal RNA genes (rDNA), induces replication stress a
128 cox1-3, nad1-6, nad4L, atp6 and cob) and two ribosomal RNA genes (rrnL and rrnS), but the atp8 gene w
129 ng nested polymerase chain reaction (PCR) of ribosomal RNA genes and a novel assay that amplifies a c
131 rearrangements among the protein-coding and ribosomal RNA genes could be inferred across the phyloge
134 into complementary DNA; V1-V2 regions of 16S ribosomal RNA genes were amplified and sequenced on an I
135 allo-HSCT at engraftment were analyzed; 16S ribosomal RNA genes were sequenced and analyzed from eac
136 d includes 13 protein-coding genes (PCGs), 2 ribosomal RNA genes, 22 transfer RNA genes and an 834 bp
137 sponding to active transposons, CRISPR loci, ribosomal RNA genes, rolling circle origins of replicati
140 enes such as that encoding the small subunit ribosomal RNA has revealed the extensive diversity of ba
141 ultiple genes impacting protein synthesis: a ribosomal RNA helicase gene, tRNA biosynthesis genes, an
142 mbled NPET, including an aberrantly flexible ribosomal RNA helix 74, resulting in at least three diff
143 and Nog1 work together in the maturation of ribosomal RNA helix 74, which is required to ensure prop
144 abundance, and rich phylogenetic content of ribosomal RNA in a rapid fluorescent hybridization assay
146 Here we used amplicon sequencing of the ribosomal RNA internal transcribed spacer region to exam
147 tructured tethers that integrate 16S and 23S ribosomal RNAs into single-chain ribosomal RNAs that rem
148 to most eukaryotes, the large subunit (LSU) ribosomal RNA is fragmented into two large and four smal
149 the nascent chain and the negatively charged ribosomal-RNA lining the exit tunnel, and for quickly ej
151 ient feature of classical DBA is a defect in ribosomal RNA maturation that generates nucleolar stress
152 that U3 snoRNA, a non-coding RNA involved in ribosomal RNA maturation, is critical for chondrocyte pr
155 binding and Mtb ribosome inhibition requires ribosomal RNA methylation in both ribosome subunits by T
156 de resistance determinants including a novel ribosomal RNA methyltransferase situated in a CRISPR (cl
157 de resistance determinants including a novel ribosomal RNA methyltransferase situated in a CRISPR arr
158 g, and liver inflammation and intestinal 16s ribosomal RNA microbiota sequencing were performed.
160 n break' has been described in which the 28S ribosomal RNA molecule is cleaved into two subparts.
162 cale features of ribosomes-such as why a few ribosomal RNA molecules dominate the mass and why the ri
163 2 domains of the large subunit (LSU) nuclear ribosomal RNA (nrRNA) gene and by morphological characte
164 physically tied to the transcription of pre-ribosomal RNA (pre-rRNA) and to large ribosomal subunit
166 e in ribosome biogenesis, functioning in pre-ribosomal RNA (pre-rRNA) processing as a component of th
168 olus, involves coordinated expression of pre-ribosomal RNAs (pre-rRNAs) and ribosomal proteins, pre-r
169 e cells and in muscles of mice without NO66, ribosomal RNA, pre-rRNA, and protein synthesis all incre
171 ing affected transcription and processing of ribosomal RNA precursors, as well as the translation of
172 modulation factor (PA3049), is required for ribosomal RNA preservation during prolonged nutrient sta
173 ON LIMIT2 (ISE2) is required for chloroplast ribosomal RNA processing and chloro-ribosome assembly.
174 nd organism viability because of its role in ribosomal RNA processing and protein synthesis, which is
175 ent classes, enables identification of novel ribosomal RNA processing factors and sites, and suggests
176 identified a 3' to 5' exoribonuclease, RRP6 (ribosomal RNA processing protein 6), as a CELF1-interact
177 in translation of RPS28 mRNA blocks pre-18S ribosomal RNA processing, resulting in a reduction in th
181 exosome component 2 (EXOSC2), also known as ribosomal RNA-processing protein 4 (RRP4), were recently
182 ts derived from healthy individuals and that ribosomal RNA production increases with age, indicating
183 egrated with analysis of fecal bacterial 16S ribosomal RNA profiles and clinical disease severity ind
184 that host-derived RNAs, most prominently 5S ribosomal RNA pseudogene 141 (RNA5SP141), bound to RIG-I
185 it methyltransferase H (RlmH) methylates 23S ribosomal RNA pseudouridine 1915 (Psi1915), which lies n
187 iation of ribosome assembly factors with pre-ribosomal RNA results in the formation of the small subu
190 ite-specific endonucleolytic cleavage in 25S ribosomal RNA (rRNA) adjacent to the c loop of the expan
191 unit has been built de novo and includes 15S ribosomal RNA (rRNA) and 34 proteins, including 14 witho
192 ucturally conserved domain that binds the 5S ribosomal RNA (rRNA) and allows its incorporation into r
194 ding process requiring tight coordination of ribosomal RNA (rRNA) and ribosomal protein (RP) producti
195 nervous system development, a disturbance of ribosomal RNA (rRNA) biogenesis and tp53 activation, whi
199 tuberculosis (Mtb) possess species-specific ribosomal RNA (rRNA) expansion segments and ribosomal pr
200 emoval of essentially all eukaryote-specific ribosomal RNA (rRNA) expansion segments, reducing the rR
201 ial ribosomal protein MRPS10 and reduced 12S ribosomal RNA (rRNA) expression, suggesting mitochondria
203 gal molecular diversity (small subunit (SSU) ribosomal RNA (rRNA) gene sequences) in field samples.
205 d-collected Helicoverpa zea larvae using 16S ribosomal RNA (rRNA) gene sequencing and matrix-assisted
209 Arabidopsis thaliana, a significant loss of ribosomal RNA (rRNA) genes with a past history of a muta
210 ransfer RNA (tRNA) binding region of the 28S ribosomal RNA (rRNA) in the large ribosomal subunit.
214 ad, loss of PP7L compromised translation and ribosomal RNA (rRNA) maturation in chloroplasts, pointin
216 : see text] bound to the ribosome reveal 23S ribosomal RNA (rRNA) nucleotide A1913 positional changes
217 side chain of macrolides interacts with 23S ribosomal RNA (rRNA) nucleotides A752 and U2609, that we
218 ng residue networks (sectors) within the 23S ribosomal RNA (rRNA) of the large ribosomal subunit.
221 ur data shows that stabilization of aberrant ribosomal RNA (rRNA) precursors in an enp1-1 mutant caus
222 ty of the U2AF1-S34F mutant cells and causes ribosomal RNA (rRNA) processing defects, thus indicating
227 increased in size, forming a surface-exposed ribosomal RNA (rRNA) shell of unknown function, which ma
229 ach organism has evolved to possess a unique ribosomal RNA (rRNA) species optimal for its physiologic
230 een studied in detail, little is known about ribosomal RNA (rRNA) structural rearrangements that take
232 enesis and identified a role for this GEF in ribosomal RNA (rRNA) synthesis that is mediated by Rac1
233 rmation of RNAP clusters is driven by active ribosomal RNA (rRNA) transcription and that RNAP cluster
235 el factors (SCFs) GreB and DksA both repress ribosomal RNA (rRNA) transcription, but SCF loading and
236 otypes from a ~1.7 x 10(7) member library of ribosomal RNA (rRNA) variants, as well as identifying mu
237 bosomes cleaved at helix 69 (H69) of the 26S ribosomal RNA (rRNA), a key part of ribosome decoding ce
239 A-seq requires efficient physical removal of ribosomal RNA (rRNA), which otherwise dominates transcri
240 tes with Grc3-Rat1-Rai1 to process precursor ribosomal RNA (rRNA), yet its mechanism of action remain
241 tudy, we evaluated two methods for preparing ribosomal RNA (rRNA)-depleted sequencing libraries for R
248 rial DNAs of two kinds: maxicircles encoding ribosomal RNAs (rRNAs) and proteins and minicircles bear
252 by auxiliary factors that process and modify ribosomal RNAs (rRNAs) or are involved in ribosome assem
253 f GLTSCR2 impairs maturation of 18S and 5.8S ribosomal RNAs (rRNAs), and Nop53 is required for matura
254 r certain non-coding RNAs (ncRNAs) including ribosomal RNAs (rRNAs), transfer RNAs (tRNAs), small nuc
257 d, and the V1-V3 region of the bacterial 16S ribosomal RNA sequences were amplified and sequenced to
260 heral blood mononuclear cells as well as 16S ribosomal RNA sequencing data from bronchoalveolar lavag
261 House dust microbiome analysis using 16S ribosomal RNA sequencing identified 202 and 171 bacteria
264 spectroscopy for metabolic profiling and 16S ribosomal RNA sequencing to assess the gut microbiome.
266 esence of collagenolytic colonies and by 16S ribosomal RNA sequencing, which determined the anatomic
274 is fragmented into two large and four small ribosomal RNAs (srRNAs) pieces, and this additional proc
275 rorhinotermes hosts, including small subunit ribosomal RNA (SSU rRNA) sequences from single cells.
277 rs the integrity of the nucleolus, impairing ribosomal RNA synthesis and evoking the ribosomal protei
278 associated with ATM-dependent repression of ribosomal RNA synthesis and large-scale reorganization o
280 n the nucleoli is required for inhibition of ribosomal RNA synthesis and nucleolar segregation in res
281 ARF plays a significant role in regulating ribosomal RNA synthesis and processing, ribosome export
282 creases upstream binding factor recruitment, ribosomal RNA synthesis, ribonucleotide levels, and affe
287 16S and 23S ribosomal RNAs into single-chain ribosomal RNAs that remain uncleaved by ribonucleases an
288 is derived from Salmonella 5'-leader of the ribosomal RNA transcript and has a 'stem' structure-cont
289 F13 1A is a nucleolar protein that represses ribosomal RNA transcription and attenuates protein synth
292 tress response associated with inhibition of ribosomal RNA transcription was previously shown to pote
294 s were mostly identified on transfer RNA and ribosomal RNA until the last decade, when they have been
296 of sputum microbiota composition (using 16S ribosomal RNA V4 gene region sequencing) with CLD define
297 ata package provides count data for both 16S ribosomal RNA variable regions, integrated with phylogen
298 ata sets from amplicon sequencing of two 16S ribosomal RNA variable regions, with extensive controlle
299 a DNA library of V3 region of bacterial 16S ribosomal RNA was subjected to paired-end Illumina seque