ライフサイエンスコーパス: script

1 ng a mystery call approach and a brief phone script.

2 ndrick mass defect plots and a "nontarget" R script.

3 new ones easily added via a provided Python script.

4 erience in coding is required to utilize the script.

5 ng in a graphical user interface and a batch script.

6 utational string search with a custom Python script.

7 nded, personalized, and structured interview script.

8 three levels) and is searchable via a python script.

9 goDB, HTML/Javascript and various bash shell scripts.

10 We introduce here our community metrics as R scripts.

11 are difficult to streamline or integrate in scripts.

12 tware, implemented in Java with supporting R scripts.

13 allowing integration with other programs or scripts.

14 d available as a set of easily implemented R scripts.

15 matically from content providers via bespoke scripts.

16 ng nodes and illustrate its use with example scripts.

17 nome database, web front end, API and server scripts.

18 d in hearing individuals reading sound-based scripts.

19 ed by adding two simple lines to their Brian scripts.

20 out by bioinformatics experts, using one-off scripts.

21 which can now be accessed via dedicated Perl scripts.

22 gration of JABAWS services into conventional scripts.

23 arguments that preclude the use of accessory scripts.

24 xisting databases using internally developed scripts.

25 archers to publish and execute data analysis scripts.

26 le at github.com/tengfei-emory/scBatch-paper-scripts.

27 ped using html, CSS, javascript and perl CGI scripts.

28 roven to enhance fluency in reading language scripts.

29 minute and postprocessed using custom Matlab scripts.

30 view information can be queried using SPARQL scripts.

31 iPython and (ii) script-based, using Python scripting.

32 Our original scripts (1) locate the heart and record pixel intensity

33 to patients in the intervention arm included scripted ACP conversations between patients, family memb

34 We argue that a change in script across primes and targets provides optimal condit

35 all interfering RNA-mediated knockdown of DC-SCRIPT affected the cytokine response upon TLR stimulati

36 that besides nuclear receptor regulation, DC-SCRIPT also modulates activation of NF-kappaBp65 after T

37 oding dendritic cell-specific transcript (DC-SCRIPT; also known as ZNF366).

38 pite a structured interprofessional rounding script and a well-established electronic health record,

39 Code, R script and documentation are available under the Artisti

40 Coexpression of DC-SCRIPT and GR is shown in human monocyte-derived DCs, an

41 FunGAP is written in Python script and is available in GitHub.

42 ry evaluated performance with a standardized script and mobile touch-screen data collection.

43 es into the tranSMART i2b2 tree along with a script and test dataset to exemplify the mapping strateg

44 omparison between the contour plots from the scripted and conventional TIC revealed improved data pre

45 rovides an intermediate level between simple scripting and complete workflow management tools.

46 An automated protocol, available for scripting and driving the graphical user interface (GUI)

47 GeIST uses a combination of Bash shell scripting and Perl.

48 ides a command-line interface for users with scripting and programming needs to incorporate or extend

49 atistics, pipeline-compatible automation via scripting and the ability to completely customize and/or

50 ublic use; the package includes installation scripts and a set of helper tools.

51 rface, an API for direct data access by Ruby scripts and access to feature data stored in BAM files.

52 format that centralizes otherwise-scattered scripts and creates dynamic reports for publication and

53 interactively to write complex, reproducible scripts and implement a suite of downstream analysis too

54 evelopers to quickly write VBS data analysis scripts and is a unique resource among tools for VBS.

55 TURNIP comprises a suite of Perl scripts and modules that facilitates the resolution of m

56 The availability of open scripts and online tools for specific data processing st

57 d hoc and requires the development of custom scripts and pipelines, making it problematic for biomedi

58 including wrappers for bash data management scripts and PLINK-1.9 to minimize computational time.

59 e to integrate free and open-source/external scripts and tools, tailoring the workflow to the needs o

60 sed in cognitive psychology (e.g., episodes, scripts) and are the inputs for mental representations t

61 ious open source software packages, in-house scripts, and Docker containers to analyze and process si

62 y, analyzed using MALT, MEGAN, and alignment scripts, and integrated with previously published dental

63 We have stored the software, scripts, and processed data in a publicly accessible rep

64 cking data using LSRanalyze or custom MATLAB scripts; and implementation of validation controls.

65 each lesion to be treated using the Eclipse Scripting Application Programming Interface, (b) determi

66 on, as most of the students' evaluations and scripts are assessed manually in Ethiopia.

67 Data and analysis scripts are available at github.com/GrossTor/response-lo

68 Open source (GNU Public License) PERL scripts are available for download from the New York Bot

69 trol files, documentation and accessory Perl scripts are available from the website.

70 The MALTAB and Python scripts are available in the Supplementary Material.

71 The R scripts are available on demand from the authors.

72 Perl and HYPHY scripts are available upon request from the authors.

73 Although Perl scripts are perfectly suited for processing large volume

74 The R scripts are provided in File 3 in Supplementary Material

75 Custom-made scripts are provided, as well as sample datasets to perm

76 e original empirical evidences, and analysis scripts are released open-source through Hippocampome.or

77 Server-side scripts are written in PHP and leverage R and a MySQL da

78 a single and fast approach using a filtering script as a means of prioritizing sample processing of d

79 ve identified the DC-specific transcript (DC-SCRIPT) as an NR coregulator, suppressing type I steroid

80 Genre scripts, as defined in the target article, leave higher-

81 The tool includes an automated and simple "scripting at the click of a button" functionality that e

82 An in-house developed script automatically processed large data files to gener

83 Execution of the script automatically yields the sequence of the final mo

84 Code and scripts available at: github.com/ChuanyiZ/vef.

85 ck Bias is a straightforward and easy to use script-based method that allows the introduction of diff

86 s: (i) interactively, using iPython and (ii) script-based, using Python scripting.

87 erogeneous clones of HSC with epigenetically scripted behaviors.

88 The use of a standardized script by novice instructors to facilitate team debriefi

89 l evidence has shown that music and language scripts can activate very similar neural circuitry that

90 A suite of test scripts can now be used to learn the core functionality

91 A customized script, coded in Matlab, was used to manually segment an

92 We demonstrate that DC-SCRIPT coexists with GR in protein complexes and functio

93 We developed an R-scripted computational pipeline to perform reanalysis an

94 nsistency (primed vs unprimed), and quality (script concordance) were assessed.

95 < 0.001), and decision quality was superior (script concordance: attendings = 90%, residents = 78.3%,

96 eractions between diagnostic group, sex, and script condition were observed in multiple brain regions

97 Resuscitation Education Using Simulation and Scripted Debriefing (EXPRESS) network simulation program

98 Scripted debriefing showed greater improvement in knowle

99 in common languages, such as R; (iii) select script-defined calculation options through a graphical u

100 The R scripts demonstrate how calls to existing R packages for

101 A tutorial, user's manual and sample scripts demonstrating usage are also available on the we

102 ships between DWTPs and WWTPs, with a python script designed to perform a network analysis by hydrolo

103 edure is implemented as CotQuest, a suite of scripts designed for use with the statistics package SAS

104 We used a script-driven imagery task consisting of narratives of b

105 ipants were engaging in brief individualized script-driven imagery trials of stress, alcohol cues, an

106 This practical guide with accompanying R script enables biobehavioural researchers to create synt

107 Collective co-performance of the script enables inter-subjectivity, which arguably contri

108 The hypothesis that the script encodes language has recently been questioned.

109 qPigscripts use the Hadoop-based distributed scripting engine Apache Pig, which automatically paralle

110 ogether, our results indicate that the Indus script exhibits rich synactic structure and the ability

111 learn, and sometimes requires programming or scripting experience from its users.

112 expertise in these software and command line scripting experience on Unix platforms, besides possessi

113 strate IL-4 to be the dominant factor for DC-SCRIPT expression in human monocyte-derived DCs.

114 Participants read a standardised script for 5 min over a blood agar plate positioned at 2

115 The script for automated integration is fast and adaptable t

116 eatment and the integration of a tailor-made script for data treatment.

117 We provide an R script for graphical visualization and statistical analy

118 The R script for our new utility is publicly available for dow

119 ily reused for other data and a small driver script for reproducing all results presented here.

120 genomes and we have released a command-line script for running larger jobs and handling unsupported

121 A new script for the recognition of halogenated compounds base

122 The script for TR calculation is included in Supplementary M

123 asily counted manually or using an automated script for user-independent assay readout.

124 ful for disease outbreak investigations, and scripts for downloading and parsing data from NCBI BioSa

125 freely available and encompasses stand-alone scripts for isolated application and evaluation as well

126 Polysolver or HLAminer combined with custom scripts for mutant peptide identification and NetMHCpan

127 Data and scripts for reproducing the results are available on bit

128 s used to assess responses to individualized scripts for stress, drug/alcohol cue and neutral-relaxin

129 Creating re-usable scripts for the SGE is a common challenge.

130 e such representative dataset along with the scripts for training and testing deep learning methods.

131 ow to interact with SeqDepot and Perl/Python scripts for use with local processing pipelines.

132 Most modules in RSeQC take advantage of R scripts for visualization, and they are notably efficien

133 promotes accelerated unfolding of a neural 'script' for task execution, despite reduced reward valua

134 Software code (programs and scripts) for processing the Populus ChIP-seq data are pr

135 xploratory analysis, SoS has a multilanguage scripting format that centralizes otherwise-scattered sc

136 The software is a command line perl script freely available as open source.

137 nt by MZmine 2 followed by a homemade Python script freely available to the community that clears the

138 searchers with powerful batch-processing and scripting functionality, and an extensible platform with

139 ed health advisers who followed standardised scripts generated by interactive software.

140 ant difference at baseline in nonscripted vs scripted groups for MCQ (P = .87), BAT (P = .99), and CP

141 Sounding music works as a script guiding action, as do, to varying degrees, many r

142 plement our algorithm in a suite of software scripts (Haploscribe).

143 put experimentation (HTE) data, Visual Basic scripts have been developed, which allow streamlining th

144 indicate little plasticity of epigenetically scripted hematopoietic stem/progenitors.

145 ncement to drive frequent deviation from the script, impairing task execution.

146 A uniform data analysis script implementing the protocol was executed by each of

147 expression, suggesting a primary role for DC-SCRIPT in the regulation of IL-10 production.

148 on unconstrained at-home behavior as well as scripted in-clinic exercises, it avoids differences acro

149 on computer programming and analysis through scripting in R or Python, allowing the trainer to cover

150 search in this area, we provide all relevant scripts in a documented and ready-to-use form.

151 ng features are manually curated with custom scripts in a non-standardized manner that results in slo

152 were analyzed using SAMTOOLS and custom Perl scripts in conjunction with BLAST searches and available

153 Implementation of debriefing scripts in resuscitation courses may help to improve lea

154 some Indo-European languages and alphabetic scripts in scientific literature.

155 ng-Embracing model reserves a role for genre scripts in the hedonic valuation of negative emotion in

156 Detailed scripts in the open-source R language are freely availab

157 A/RNA designs by providing multiple analysis scripts, including mean structures and structure flexibi

158 with no dependency on other software and no scripted input.

159 mind in the eyes, olfactory identification, scripted interaction), and safety and tolerability in a

160 METAL provides a rich scripting interface and implements efficient memory mana

161 A scripted interview was used to simulate the patient expe

162 peline of code generation to translate Brian scripts into C++ code that can be used as input to GeNN,

163 The complete ready-to-run script is available as supplemental material.

164 Availability and Implementation: A GPL PERL script is available for download.

165 The proposed script is based on the recognition of a generic halogena

166 The Perl script is freely available from ftp://ftp.sanger.ac.uk/p

167 ntrolling GR function and GILZ expression DC-SCRIPT is potentially involved in the balance between to

168 DC-specific transcript (DC-SCRIPT) is a protein expressed by DCs and has been demon

169 Silencing of IL-10 in DC-SCRIPT knockdown DCs rescued IL-12 expression, suggestin

170 Moreover, DC-SCRIPT knockdown DCs showed enhanced phosphorylation, ac

171 ecreased TLR-mediated IL-10 production in DC-SCRIPT knockdown DCs.

172 shown in human monocyte-derived DCs, and DC-SCRIPT knockdown enhances GR-dependent upregulation of G

173 ole in TLR-induced IL-10 production after DC-SCRIPT knockdown.

174 The use of a simple scripting language and an object-oriented scheme facilit

175 offers the convenience of an object-oriented scripting language and provides the ability to integrate

176 pabilities at the cost of learning a complex scripting language which is used to specify these models

177 f image recognition tools provided by Sikuli scripting language, while handling of their physical cou

178 va viewer for 3D structures, with a powerful scripting language.

179 a variety of tools implemented in different scripting languages and analysis of large data sets usin

180 statistical analysis, is often performed in scripting languages like R, Perl, and Python.

181 le pathway analysis directly within the same scripting languages used for primary data analyses.

182 mplemented in C++, is easily executed within scripting languages used in the bioinformatics community

183 alysis tool PathVisio available from various scripting languages will benefit researchers.

184 ork allows everything from image formats, to scripting languages, to visualization to be extended by

185 We argue that, in film genre scripts, lower-level stylistic features lend access to m

186 nd other sites in West Asia reveals that the script may have been used to express different content i

187 A second script measured the average RNFL thickness along the pap

188 The tool additionally provides a flexible scripting mechanism to handle complex queries.

189 m local populations and trained to portray a scripted medical condition to health-care providers) to

190 lp features and is ideal for beginners while script-mode is best suited for algorithm development.

191 DC-SCRIPT mRNA expression in the immune system was confined

192 of DCs with TLR ligands further increased DC-SCRIPT mRNA expression, suggesting a role in DC maturati

193 Such bioinformatics scripts necessarily include similar basic functionality

194 a stand-alone computer program that reads a script of commands to represent complex macromolecules,

195 osts, all the while following the life cycle script of plant-associated bacteria.

196 analysis and workflow systems, we developed Script of Scripts (SoS), an interactive data-analysis pl

197 The library generates a script of TeX macro commands for the vector graphics lan

198 In the meantime, the scripts of the methods are available on request from the

199 l data, metadata of the experimental design, scripts of the quantitative analysis workflow, intermedi

200 In this study, we analyzed the effect of DC-SCRIPT on GR activity.

201 d, requiring manual data handling and custom scripting on a case-by-case basis.

202 Cloud (EC2) nodes and store private data and scripts on Amazon's Simple Storage Service (S3) with use

203 However, using these tools requires some scripting or command-line skills and familiarity with co

204 arty software packages and sometimes further scripting or computer programming.

205 mbine optimization specifications via Python scripts or Genbank annotations.

206 who wish to efficiently adapt their existing scripts or pipelines.

207 t or statistical software without additional scripts or proprietary components.

208 the efficacy of the Placebo-Control Reminder Script (PCRS), a brief interactive procedure that educat

209 Most scripts performed by patients with progressive supranucl

210 The model, provided as an annotated Matlab script, predicts the Veff as a function of physical-chem

211 up facilitator used open-ended questions and scripted probes from a written guide.

212 criptional network underlying this carefully scripted process is not well understood.

213 ge, we show for the first time endogenous DC-SCRIPT protein expression in human DCs both in vitro and

214 DC-SCRIPT protein is detected early upon differentiation of

215 and monitors web services according to test scripts provided by the their administrators.

216 A cloning strategy expressed as a pydna script provides a description that is complete, unambigu

217 s (i.e. template matching fingerprinting and scripting) providing highly informative chemical signatu

218 ade the dataset, trained model and inference scripts publicly available along with detailed usage ins

219 nalysis procedures and full automation using scripts, QSoas features a very powerful data fitting int

220 The script remains undeciphered, despite a large number of a

221 ameters, JUDI reduces the number of lines of scripting required by a factor of O(n).

222 he linguistic hypothesis by showing that the script's conditional entropy is closer to those of natur

223 A custom script segmented the RNFL; the fovea and optic nerve cen

224 This demonstrates that DC-SCRIPT serves an important role in regulating GR functio

225 o was then repeated while reading a 2-minute script, simulating a talking patient.

226 ly, 'micrographia' and 'lack of decrement in script size' are also more common in progressive supranu

227 smaller than 50% of the control group's mean script size, was present in 75% of patients with progres

228 anuclear palsy did not exhibit decrements in script size.

229 and workflow systems, we developed Script of Scripts (SoS), an interactive data-analysis platform and

230 contrast, in languages with nonalphabetical scripts, such as Mandarin Chinese, individual speech sou

231 d can be used continuously without requiring scripted tasks be performed.

232 physicians.DESIGN, SETTING, AND PARTICIPANTS Scripted telephone calls were placed to every dermatolog

233 hic and socioeconomic data were obtained via scripted telephone questionnaires.

234 y a physician assistant and assessed using a scripted template.

235 First, we developed a custom script that can detect intergenic regions of the S. pyog

236 chemes, and we provide an example R computer script that can perform ESM calculations on large datase

237 rson with the use of a standardized clinical script that differed by insurance status.

238 odified X!Tandem C++ executable and a Python script that drives Hadoop clusters including Amazon Web

239 odified X!Tandem C++ executable and a Python script that drives Hadoop clusters including Amazon Web

240 ave uncovered about 3,800 short samples of a script that was used throughout the civilization.

241 e report the development of a set of R-based scripts that allow for pre- and postprocessing of raw LC

242 PyMOL and Chimera scripts that colorize reactive groups on residues that a

243 hers to quickly develop simple, yet powerful scripts that enable complex genomic analyses.

244 ions are accomplished via a set of automated scripts that enable the user to go from a set of raw dat

245 We provide helper scripts that identify and reconstruct split reads given

246 The Python scripts that implement the SNP2SIM workflow are availabl

247 ts across a cohort is often done with ad hoc scripts that must be re-written for every new project.

248 ently reviewed and analyzed by custom MATLAB scripts that segment single-cell contours and extract qu

249 The framework also includes all the scripts that were used to curate the dataset, and genera

250 emi-automated methods, including Linux-based scripts, that simplified the process while minimizing th

251 gulatory points and discussing how they help script the fate of pluripotent stem cells.

252 en coupled with our novel companion software script, the African swine fever fast analysis sequencing

253 we created an R package called pmultinom for scripting these calculations.

254 ucture that can be used directly in a Python script through its application programming interface (AP

255 We execute scripts through Boa(g) to answer questions about the gen

256 Third, the nestagg script to aggregate results of the individual runs into

257 We provide a user-friendly Python script to apply this strategy to real datasets.

258 be downloaded by the user together with an R-script to compute the enrichment of SNPs/variants in sel

259 An R script to find the time point with the minimal temporal

260 rds was performed using a proprietary python script to identify any mention of QT prolongation, ventr

261 Therefore, we also include a Python script to quickly (ca. 132 000 molecules/min) calculate

262 g triggered by contact closure relays, and a script to retrieve the data.

263 Second, the nestrun script to run a given command using each set of paramete

264 to address this issue by using a debriefing script to standardize debriefings.

265 these WMS require significant scripting to ensure an optimal execution.

266 ss, scientists must write frequently complex scripts to perform these tasks.

267 Our pipeline uses custom scripts together with external assembly, mapping and var

268 Pymol scripts together with PDB files allow movies of individu

269 uttered GCxGC output convention based on the scripted total ion chromatogram (TIC) data with precise

270 oped and validated the semi-automatic MATLAB script TracMouse for unbiased detection of video-recorde

271 The time course of cross-script translation priming and repetition priming was ex

272 Our custom script used the phasing information from the SNV VCF and

273 All training data, test data, and scripts used are available from the SpiderP website.

274 All data and scripts used in this correction have been made available

275 and prediction scores for test-cases, and R scripts used in this work are provided as part of the Su

276 documentation, tutorial material and all the scripts used to generate the data described in this pape

277 g threshold capillary pressure field and the scripts used to generate them are provided, but the appr

278 tition priming was examined in two different scripts using a combination of the masked priming paradi

279 ented in the PHP Symfony2 framework with TCL scripts using the CACTVS toolkit.

280 ame incident, an effect documented with both scripted videos and real police videos.

281 Four scripted videos of a bad news conversation were created

282 e randomized to 1 of 4 arms: permutations of scripted vs nonscripted debriefing and high-realism vs l

283 Once developed, the script was applied to the identification of organohaloge

284 The script was used to search for select novel polyfluorinat

285 Using a standardized script, we called 1245 randomly selected UCCs in 50 stat

286 Uniform statistical analysis scripts were run locally.

287 to attain competency in reading orthographic scripts which encode the sound properties of spoken lang

288 e as well as all the custom-written computer scripts, which can be modified according to specific exp

289 ular interactions typically requires writing scripts, which impacts the non-specialist accessibility

290 bs to customize their Luminex analyses using scripting while still presenting users with a single, gr

291 for running analyses and sharing data and R scripts with others.

292 A large set of fully annotated analysis scripts with which to interpret these data is embedded i

293 peaks were rapidly assigned by use of a Perl script, with a mass-matching tolerance of 200 ppm.

294 We present eLAMP, a PERL script, with Tk graphical interface, that electronically

295 grated as remotely executed tasks in locally scripted workflows.

296 (computational core) and Python (pipelining scripting wrapper, >=3.6.1).

297 ocessing, curve fits, and algorithms through scripts written in common languages, such as R; (iii) se

298 The NFP algorithm is implemented with scripts written in octave, linux shell and perl.

299 is implemented primarily in bash with helper scripts written in python.

300 Scripts, written in Perl and R, for simulating short rea