ライフサイエンスコーパス: semi-automated

1 In this study, we have developed a semi-automated, 384-well format axon degeneration assay

2 We describe a custom workflow to perform semi-automated, 3D cell and nucleus segmentation, and sp

3 Proposed method semi-automated algorithm achieved acceptable accuracy, q

4 We developed and validated a semi-automated algorithm based on structured electronic

5 ss correlation (ICC) compared the manual and semi-automated algorithm for several parameters: SC area

6 A robust semi-automated algorithm was developed to quantify area

7 A semi-automated algorithm was developed which enabled aut

8 CC images were then exported to imageJ and a semi-automated algorithm was used for subsequent quantit

9 To address the need for an evaluable semi-automated algorithm, we developed GammaGateR, an R

10 During automated/semi-automated alignment across biological ontologies, d

11 perform with approaches that rely on manual/semi-automated analyses.

12 here high-volume workflows may benefit from (semi-)automated analysis.

13 biomarker (pixels/mm(2) ) was quantified by semi-automated analysis (Studio-FL software).

14 and reproducibly challenges, we developed a semi-automated analysis algorithm workflow to analyze lo

15 nonical problem statement vocabulary through semi-automated analysis and distillation of provider-ent

16 eline building upon free-to-use programs for semi-automated analysis of cell cycle phases.

17 We collected these data through a semi-automated analysis of over 3000 scientific articles

18 be a new public web server, COLMARq, for the semi-automated analysis of sets of 2D HSQC spectra of co

19 Using a semi-automated analysis pipeline, we demonstrate the acc

20 ence analysis suite developed to perform the semi-automated analysis required for large-scale genomes

21 A semi-automated analysis system has also been developed t

22 Blinded operator evaluation of the semi-automated analysis tool was performed and compared

23 Semi-automated analytical tools are presented for the qu

24 eizure-free, >1 year without seizure), using semi-automated and automated detection techniques.

25 This platform is semi-automated and enables repeated, rapid biomarker mon

26 risk in this epilepsy population, using both semi-automated and fully automated detection methods, an

27 correlation between the two measurements of semi-automated and ImageJ were 0.99 and 0.99 respectivel

28 A hybrid semi-automated and manual approach was used to label MRI

29 Brain volumes were measured using semi-automated and manual segmentation methods.

30 Sorensen-Dice coefficient between the semi-automated and manual segmentation was 0.77 +/- 0.01

31 algorithm was quantitatively evaluated using semi-automated and manually-corrected segmentations in 8

32 Using a semi-automated and scalable set of experimental tools, w

33 e developed an innovative, fully integrated, semi-automated, and economically viable platform based o

34 m described in this work was cost-effective, semi-automated, and user-friendly.

35 ere we introduce a workflow for large-scale, semi-automated annotation of specialized metabolites and

36 sts immense potential for enabling automated/semi-automated annotation pipelines, thereby decreasing

37 entify mecC-harboring MRSA, including three (semi)automated antimicrobial susceptibility testing (AST

38 We introduce 'CyAnno', a novel semi-automated approach for deconvoluting the unlabeled

39 he COMPASS method thus provides an efficient semi-automated approach for screening population dataset

40 ndependently segmented GGOs on HRCTs using a semi-automated approach, and radiomics features were ext

41 With use of the semi-automated approach, applying the cut-off score decr

42 ells, i.e. 'ungated' cells, and that current semi-automated approaches ignore their modeling resultin

43 igher efficacy than current state-of-the-art semi-automated approaches.

44 und more neurons more quickly than manual or semi-automated approaches.

45 A novel semi-automated assay revealed diverse responses of membe

46 Genomic data allow the large-scale manual or semi-automated assembly of metabolic network reconstruct

47 The Semi automated (autofocusing, scanning, image registrati

48 Furthermore, we developed a semi-automated backend connection allowing scalable asse

49 Deployment of the semi-automated bacterial phenotypic fingerprint (BPF) pr

50 A semi-automated bioinformatic pipeline with MToolBox was

51 atforms and processed data centrally using a semi-automated bioinformatics pipeline.

52 ics Analysis Tool (ICEKAT) was developed for semi-automated calculation of initial rates from continu

53 Here, we develop a novel program for semi-automated cell isolation and culture equipment to p

54 ial samples from 668 individuals utilizing a semi-automated Cell Profiler method on five tissue micro

55 n combination with spectral matching for the semi-automated characterization of ribonucleosides.

56 imal behaviour within one trial and employ a semi-automated classification method for identifying the

57 t the requirements for soil drying times and semi-automated cleaning evaluations.

58 -friendly designed interface and facilitates semi-automated clinical CNV interpretation following the

59 Our proposed semi-automated clinical workflow can reduce pathologists

60 For screening, a semi-automated competitive inhibition binding assay was

61 at the single-cell resolution using CyTOF, (semi-)automated computational methods are applied for an

62 A semi-automated computational design platform and a toolb

63 o the closest human germline sequences using semi-automated computational methods.

64 icient and slow, necessitating automated and semi-automated computational tools.

65 Semi-automated computer grading was used to determine th

66 d from digitized retinal photographs using a semi-automated computer program by a single grader maske

67 describe EZ-Rhizo: a Windows-integrated and semi-automated computer program designed to detect and q

68 mages were graded by trained graders using a semi-automated computer-based program (Singapore I Vesse

69 e of the distal femurs were measured using a semi-automated contour based segmentation process.

70 bular left third molar (T38) outlined with a semi-automated contour.

71 -laundering microscopy analysis supported by semi-automated counting methods.

72 nner, and hypothetical pathways suggested by semi-automated culling of the literature.

73 ight into metabolism, as well as acting as a semi-automated curation methodology for genome-scale met

74 gaps in available mappings motivating their semi-automated curation.

75 function databases are built on automated or semi-automated curations and can contain various annotat

76 i were computed from MRI segmentations using semi-automated, customized image processing algorithms.

77 Following the previous report of a semi-automated detection of HTR based on the dynamics of

78 clinical pathways can guide development of a semi-automated detection tool to surveil for CIED infect

79 extended the utility of a recently described semi-automated diffusion tensor imaging (DTI) tissue seg

80 cells, and our PIP-H2A construct allows for semi-automated direct quantification of cell cycle phase

81 A semi-automated dithiothreitol (DTT) analytical system wa

82 roplet absorbance detector, which-coupled to semi-automated droplet generation-forms a tubing-based d

83 Recently, with the advent of semi-automated equipment to assist in DNA analysis, ther

84 Semi-automated evaluation of fundus photographs (1 eye/p

85 red to analyze M-mode ultrasound images in a semi-automated fashion using a pixel intensity evaluatio

86 thods for building pseudo-atomic models in a semi-automated fashion.

87 r to submit selected sequences to dbEST in a semi-automated fashion.

88 cles, such as microplastics and others, in a semi-automated fashion.

89 To address this, we present PhaseMetrics, a semi-automated FIJI-based image analysis pipeline tailor

90 the development and use of a 96-well plate, semi-automated, flow cytometric assay that uses a recomb

91 Semi automated fluorescein based allelotyping was perfor

92 a pipeline using CRISPR/Cas9, non-invasive, semi-automated fluorescence imaging and deep learning-ba

93 ENEVA (GENe Expression Variance Analysis), a semi-automated framework for exploring massive amounts o

94 Overall, estimated egg counts of the semi-automated & fully automated AiDx Assist correlated

95 DeepCyTOF achieves very high accuracy on the semi-automated gating challenge of the FlowCAP-I competi

96 offers a powerful computational approach for semi-automated gating of CyTOF and flow cytometry data.

97 s various biological entities, a step toward semi-automated gene-trait association discovery.

98 Semi-automated genome annotation (SAGA) algorithms facil

99 Semi-automated genome annotation methods such as Segway

100 Odyssey is a simplified, efficient, semi-automated genome-wide imputation and analysis pipel

101 n fetal gene functions using both manual and semi-automated GO procedures.

102 Semi-automated grading of fundus photographs (1 eye/part

103 We used a custom semi-automated graphical user interface to identify the

104 VHF are strongly associated with RB, and our semi-automated greyscale reflectivity analysis indicates

105 This assay was adapted for semi-automated high throughput screening, increasing thr

106 Semi-automated high-throughput imaging and image analysi

107 ocess for this disease, we first developed a semi-automated high-throughput/content-genome-wide RNAi

108 n production as a case study, we developed a semi-automated, human-in-the-loop pipeline (hereafter ca

109 eld are consistent with results obtained via semi-automated image analysis based on ImageJ.

110 Using semi-automated image analysis of high-resolution digital

111 Here, we developed a semi-automated image analysis pipeline for the quantitat

112 Here, we use semi-automated image analysis to show that iron deficien

113 intensity of each body were quantified using semi-automated image analysis tools revealing quantitati

114 measured in orientated biopsy sections using semi-automated image analysis.

115 Here, we describe a semi-automated imaging and analysis pipeline that identi

116 In this study, we demonstrated a novel semi-automated in-syringe-based coagulant-assisted liqui

117 updating, and searching for trials through a semi-automated interface built using R Shiny, MongoDB, a

118 between the area of isopters obtained using semi-automated kinetic perimetry (SKP) and Vigabatrin do

119 This semi-automated, kit-free approach offers a versatile alt

120 Semi-automated LGE quantification using dark-blood LGE i

121 Libraries were prepared using an optimized semi-automated library preparation method and sequenced

122 nd the utility of this approach by assessing semi-automated library preparation, higher sample multip

123 In addition, we used a semi-automated literature mining approach to identify ov

124 Our annual updates curate the data using a semi-automated literature search of the references cited

125 eloped method is a simple, highly sensitive, semi-automated, low-matrix effect and efficient procedur

126 Semi-automated machine learning-aided SSI abstraction gr

127 nsity growth and brain atrophy, we applied a semi-automated magnetic resonance imaging segmentation a

128 assification with annotations performed in a semi-automated manner, requiring substantially reduced r

129 ghput anti-cancer therapeutic screening in a semi-automated manner.

130 directly from tissue microenvironments in a semi-automated manner.

131 analyses on lesion boundary and area using a semi-automated MATLAB algorithm.

132 Finally, we demonstrate semi-automated measurement of growth curves of individua

133 Here, we characterise the use of a semi-automated mechanical tissue dissociation technique,

134 Here we present a browser-based Semi-Automated Metabolic Map Illustrator (SAMMI) for the

135 We developed a semi-automated method called Jorg to help circularize sm

136 A new semi-automated method for high-throughput identification

137 Machine learning techniques offer a semi-automated method for identifying specific medicatio

138 A semi-automated method for NOE assignment that takes adva

139 elin formation was quantified using a custom semi-automated method that is suitable for larger scale

140 manually with H&E histological slices with a semi-automated method using micro-CT datasets.

141 A semi-automated method was used to calculate skeleton den

142 nsively quantified AWE in 3D imaging using a semi-automated method.

143 isual estimation is used or by incorporating semi-automated methods for G4 burden measurement.

144 Accurate automated or semi-automated methods for quantitation of left ventricu

145 t the DeepCryoPicker compares favorably with semi-automated methods such as DeepEM, DeepPicker, and R

146 Progress in semi-automated methods to register imaging data into a c

147 formatted and imported into Cytoscape using semi-automated methods, including Linux-based scripts, t

148 edefined locations is achieved using a novel semi-automated microcontact printer.

149 us was assessed on Nissl-stained sections by semi-automated microscope image analysis.

150 nd efficacy of a new robot-guided system for semi-automated, minimally invasive, pedicle screw placem

151 Such tools could facilitate semi-automated MS lesion quantification; and reduce rate

152 for search score and other metrics to enable semi-automated MS/MS data analysis.

153 an Connectome Project (HCP) and an objective semi-automated neuroanatomical approach, we delineated 1

154 This study tested FIBER-ML, a semi-automated, open-source freeware that uses a machine

155 automated spectral-segment editor includes a semi-automated or automated assessment of the quality of

156 issue classification algorithm followed by a semi-automated parcellation method.

157 The semi-automated pipeline also shows improvement in sample

158 re we present Polarity Measurement (Pome), a semi-automated pipeline for the quantification of cell p

159 ddress these challenges, we have developed a semi-automated pipeline integrating multiple open-source

160 Therefore, we developed SPOROS, a semi-automated pipeline that produces multiple useful ou

161 Here, we outline an open-source semi-automated pipeline to chemically fixate, stain, and

162 Here, we describe a low-cost, semi-automated pipeline to extract cell-free RNA using o

163 Here we develop a semi-automated pipeline using electron microscopy to rec

164 This paper introduces the first semi-automated pipeline, to our knowledge, that converts

165 iety of external sources using automated and semi-automated pipelines then processed via a combinatio

166 ion sensitivity, which was observed with the semi-automated plethysmography apparatus, but not a buri

167 RPE-related changes were evaluated using a semi-automated polarization-sensitive OCT segmentation a

168 iomics is defined as the use of automated or semi-automated post-processing and analysis of multiple

169 The FA images were subjected to semi-automated pre-processing.

170 To expedite the review of semi-automated probability maps of organelles and other

171 The computer programs needed to create a semi-automated procedure for carrying out this epitope p

172 ilaterian animals that was assembled using a semi-automated procedure, designed to reduce known error

173 The two teams have developed a semi-automated process for maintaining up-to-date cross-

174 A proof-of-concept semi-automated process has been demonstrated using targe

175 from the target material was performed by a semi-automated process using extraction chromatography a

176 source databases, we have implemented a new semi-automated process, thereby lessening the burden of

177 troduce an open-source software, LIQUID, for semi-automated processing and visualization of LC-MS/MS-

178 follow these dynamic changes, but only a few semi-automated processing methods currently exist for qu

179 ogram suite MpUL-multi was written for rapid semi-automated processing of TB-TEM dark field data acqu

180 ignment are described in detail, including a semi-automated protocol based on a simulated annealing M

181 trons open-source platform, we implemented a semi-automated protocol showing similar efficiency compa

182 Its use as a semi-automated quality control tool is demonstrated usin

183 Recently, the performance of various semi-automated quantification methods has been evaluated

184 by substituting for time-intensive manual or semi-automated quantification techniques.

185 Semi-automated quantified FA leakage can be used as a bi

186 wth factor (anti-VEGF) therapy in BRVO using semi-automated quantified fluorescein angiography (FA) f

187 We developed NeuronMetrics for semi-automated, quantitative analysis of two-dimensional

188 Semi-automated queries to the corresponding authors of t

189 A semi-automated, rational design strategy has been used t

190 Semi-automated RECIST measurements were available to cli

191 We assembled a semi-automated reconstruction of L2/3 mouse primary visu

192 tron microscopy images and, in particular, a semi-automated reconstruction pipeline deployed at Janel

193 available biological databases and automated/semi-automated reconstruction tools.

194 consolidation were quantified from CT using semi-automated research software.

195 Semi-automated retinal segmentation software was used to

196 We developed a semi-automated, ripple curation toolbox (ripmap) to sepa

197 tion, cleaning and concentration) to build a semi-automated sample processing pipeline of their own a

198 In this study, various semi-automated scar quantification methods were evaluate

199 This article presents a semi-automated scheme that is capable of comparing funct

200 a were calculated in specified regions using semi-automated SDOCT segmentation.

201 for each modality using previously developed semi-automated segmentation (VMseg) for WF-OCTA and manu

202 This study aims to evaluate a semi-automated segmentation algorithm of SC and TM in pe

203 tter hyperintensity volumes were measured by semi-automated segmentation and percentage change in whi

204 nuation correction computed tomography using semi-automated segmentation at the 12th thoracic vertebr

205 Semi-automated segmentation enhances reproducibility and

206 ss (MT) and intact area were estimated after semi-automated segmentation for the following individual

207 ividual nuclei, we developed an open-source, semi-automated segmentation method using a customized de

208 Choroidal thickness was measured by semi-automated segmentation of EDI-OCT images from 1.5 m

209 day, and potentially enables improvements in semi-automated segmentation of live corals in coral reef

210 rticular, optimised tissue contrast enabling semi-automated segmentation of soft and hard tissue from

211 Both methods required a single semi-automated segmentation of the left ventricle cavity

212 sented the gold standard and was compared to semi-automated segmentation of the same structures.

213 Semi-automated segmentation permits assessment of differ

214 are subject to interobserver variability if semi-automated segmentation techniques are used.

215 Previous studies utilize manual or semi-automated segmentations, which are time consuming a

216 Semi-automated SLAVV is demonstrated on three in vivo 2P

217 24-well culture plate format, resulting in a semi-automated small drop assay.

218 Haemodynamic properties were extracted with semi-automated software and compared between groups.

219 and CRVE, respectively) were measured using semi-automated software from two monochromatic images: o

220 n mass spectrometry (MS) instrumentation and semi-automated software have led to a push toward the us

221 designed Junction Mapper as an open access, semi-automated software that defines the status of adhes

222 To address this problem, we developed a semi-automated software tool-Genome Puzzle Master (GPM)-

223 Semi-automated software was used to assess pericoronary

224 PVA was performed on CT/MRI using semi-automated software, and LWH measurements were obtai

225 Using semi-automated software, we quantified the AV tissue com

226 ose tissue (PCAT-v and PCAT-a) on CCTA using semi-automated software.

227 fusing it chemically to KTag, available via semi-automated solid-phase peptide synthesis (SPPS), whi

228 ent: residual deep learning (F1-score 0.97), semi-automated spatio-molecular biclustering (F1-score 0

229 A semi-automated spectral-segment editor includes a semi-a

230 Semi-automated spike detection and advanced modeling str

231 nic health record data was tested to perform semi-automated SSI abstraction.

232 sis of subnuclear structures by avoiding the semi-automated steps, resulting in reduced processing ti

233 to cell types and mitochondrial function and semi-automated stereological assessment was performed on

234 This study demonstrates that the use of a semi-automated surgical robot for pedicle screw placemen

235 ting group patterns are discussed, but also (semi)automated syntheses, enzymatic approaches, and func

236 Finally, we present an optimised semi-automated synthesise-and-test protocol to obtain mu

237 in separation and measurement in 30 min in a semi-automated system adaptable to multiplexed protein d

238 We show, for the first time, that this semi-automated system can identify nests with a high per

239 on was extracted from these papers through a semi-automated system that directly solicited the paper

240 (52)Mn was purified, when possible, using a semi-automated system.

241 d disquieting trend to create, and then use, semi-automated systems (risk scores, risk calculators, a

242 n, broth dilution, or commercially available semi-automated systems.

243 le brain and total hippocampal volumes using semi-automated techniques, and adjusted for total intrac

244 Alzheimer's disease using fully automated or semi-automated techniques.

245 In contrast to previous "semi-automated" techniques, where X-ray images were used

246 ction with rapid multiplex RT-PCR to provide semi-automated testing capabilities and generate results

247 ive and labour intensive, the development of semi-automated text mining support is hindered by unavai

248 red ontologies, to expedite curation through semi-automated text-mining approaches, and to enhance cu

249 Utilizing a semi-automated three-dimensional neurite tracing methodo

250 ell motility, and indeed, our work employing semi-automated time-lapse microscopy demonstrates that M

251 Our process is semi-automated to reduce labor and improve reproducibili

252 Additionally, we developed a semi-automated tool that identified the antigenic intera

253 nTracer, an ImageJ plug-in for user-guided, semi-automated tracing of multispectral fluorescent tiss

254 We assessed the accuracy of semi-automated tumor volume maps of plexiform neurofibro

255 n up to gigabecquerel (GBq) quantities in a (semi)automated two-step protocol applied across three co

256 m all steps of automated image segmentation, semi-automated user-guided error correction, and data an

257 The initial isolation of the cells was semi-automated using an Octodissociator and the resultan

258 plementing them, yet computational tools for semi-automated variant interpretation are not available.

259 demonstrates that the previously published, semi-automated VMseg approach can also be applied to DRE

260 as emerged as a flexible method that enables semi-automated volume ultrastructural imaging.

261 We provide a protocol that can be used in a semi-automated way and with tools that are freely availa

262 cale models, so users can draw pathways in a semi-automated way.

263 However, standard, semi-automated WGS analysis may overlook diagnoses in co

264 Here, we have developed a semi-automated workflow for targeting with a modified ul

265 Our semi-automated workflow screens 1,000 colonies, identify