ライフサイエンスコーパス: short tandem repeat

1 ement and replaced the reference (AAAAG)(11) short tandem repeat.

2 d by deletion of a single repeat unit from a short tandem repeat.

3 2 highly variable HLA class II regions and 5 short tandem repeats.

4 alternate structure in sequences containing short tandem repeats.

5 ns, often caused by pathogenic expansions of short tandem repeats.

6 e high mutation rate of one or few loci with short tandem repeats.

7 corresponding to complex insertions and long short tandem repeats.

8 ed with the accumulation of deletions within short tandem repeats.

9 onor origin in three of the five analyzed by short-tandem repeats.

10 The results indicate that two polymorphisms, short tandem repeat 1 and insertion/deletion polymorphis

11 Short tandem repeats affect gene expression by binding r

12 from the controls in the frequencies of nine short tandem-repeat alleles.

13 Analysis of short tandem repeats also detected polymorphisms that su

14 Short tandem repeat analysis also identified ATXN3 repea

15 mission and remain 100% donor as assessed by short tandem repeat analysis of the marrow 6 and 12 mont

16 Spectral karyotyping and short tandem repeat analysis of the UISO cells matched t

17 CTG18.1 was genotyped using a combination of short tandem repeat analysis, triplet repeat-primed poly

18 Genetic profiling by short-tandem-repeat analysis verified that the HCC-PDX m

19 arting genomes available for subsequent STR (short tandem repeat) analysis by a whole genome amplific

20 framework for cell line annotation linked to short tandem repeat and single nucleotide polymorphism p

21 One hundred four short tandem repeat and STS markers have been localized

22 CTG18.1 status was determined by short tandem repeat and/or triplet-primed polymerase cha

23 n-B DNA-forming motifs coverage by including short tandem repeats and adds key visualization tools to

24 s motifs predicted to form static DNA bends, short tandem repeats and homo(purine*pyrimidine) tracts

25 Short tandem repeats and variable-number tandem repeats

26 characterizing repetitive sequences, such as short tandem repeats, and aiding contig assembly in sequ

27 cleotide variants, insertions and deletions, short tandem repeats, and copy number variants.

28 Short tandem repeats are among the most polymorphic loci

29 Insertion-deletion polymorphisms at these short tandem repeats are common (80% of repeats examined

30 Expansions of short tandem repeats are genetic variants that have been

31 As short tandem repeats are overrepresented in plant genome

32 Microsatellites-a class of short tandem repeat-are established as an important sour

33 ical strains were genotyped according to the short tandem repeats assay.

34 mammals in possessing a segment of related, short tandem repeats at a defined location, but in Tupai

35 ng the IBD-based estimates with pedigree and short tandem repeat-based methods, we show that IBD esti

36 Very short tandem repeats bear substantial genetic, evolution

37 tranded DNA, and vWF, TH01, TPOX, and CSF1PO short tandem repeats can be separated with single-base r

38 us in which the expansion and contraction of short tandem repeats can readily compromise (PdaA(OFF))

39 four major mechanisms by which expansion of short tandem repeats causes disease: loss of function th

40 Molecular analysis based on 15 short tandem repeats confirmed the size of the duplicati

41 random genome-wide search using polymorphic short tandem repeats demonstrated linkage with D14S121 (

42 Although many dinucleotide short tandem repeat (diSTR) markers are available for th

43 We present the use of short tandem repeat DNA "fingerprinting" technology as a

44 hnology (NIST) has compiled and maintained a Short Tandem Repeat DNA Internet Database since 1997 com

45 ted instrument for the analysis of multiplex short tandem repeat DNA profiles from reference buccal s

46 The use of expert systems to interpret short tandem repeat DNA profiles in forensic, medical an

47 romosomes and are composed of long tracks of short tandem repeat DNA sequences bound by a unique set

48 the genomic DNA inserts from the 34 YACs, 13 short tandem repeats, eight expressed sequence tags, and

49 r, structural variation analysis showed that short tandem repeat expansion was associated with an inc

50 rge insertions, small indels (10-50 bp), and short tandem repeat expansions and contractions.

51 Copy number variants and short tandem repeats for 13 neurological disorders were

52 Short tandem repeats for DNA fingerprinting represents a

53 ication was done for nine highly polymorphic short tandem repeats for each specimen and a unique DNA

54 r specific developmental features, including short tandem repeats for neurological defects.

55 luorescence-based detection of the amplified short tandem repeat fragments and subsequent analysis of

56 Through single nucleotide polymorphism and short tandem repeat genotype analysis we demonstrate tha

57 uito bloodmeals to cohort participants using short-tandem repeat genotyping.

58 electrophoresis devices allow us to perform short-tandem-repeat genotyping assays in under 2 min and

59 tagged site mapping, and binary-marker and Y-short tandem repeat haplotyping to understand the struct

60 ngth resulting from variations in numbers of short tandem repeats has been shown to provide a high le

61 Our method, termed STRique for short tandem repeat identification, quantification and e

62 xamine haplotype distributions defined by 12 short tandem repeats in a sample of 1269 men from 41 Ind

63 her two polymorphisms, GXAlu and EVI-20, are short tandem repeats in intron 27b.

64 their 3' coding regions that differ from the short tandem repeats in other vlp genes yet retain struc

65 r HLA genes simultaneously with analysis for short tandem repeats in the HLA region to select and tra

66 We show the presence of numerous short tandem repeats in the human cytomegalovirus (HCMV)

67 Short tandem repeat is the gold standard method, but has

68 le population genetic studies of eukaryotes, short tandem repeats known as microsatellites, have been

69 Nuclear short tandem repeat loci also show evidence of this expa

70 Short tandem repeat loci tightly linked to candidate gen

71 to 5 bp are referred to as microsatellite or short tandem repeat loci.

72 Three short-tandem-repeat loci, vWA, THO1, and TPOX, are coamp

73 G861C polymorphism and for a closely linked short-tandem repeat locus, D6S284.

74 to an intravenous glucose challenge and the short tandem repeat marker D1S198, indicative of a genet

75 70 kindreds was completed using deCODE 1100 short tandem repeat marker set at an average 4-cM densit

76 Genetic linkage analysis used 167 short tandem repeat markers (STRPs) spaced throughout th

77 Genotyping of five short tandem repeat markers in the region was performed

78 veloping and typing 116 gene-specific and 12 short tandem repeat markers on the 5,000-rad horse x ham

79 ies with genetically confirmed DM2, using 19 short tandem repeat markers that we developed that flank

80 Here, we used short tandem repeat markers to explore fine-scale geneti

81 ith available genotypes on approximately 400 short tandem repeat markers using a general pedigree var

82 A genome-wide scan using 387 short tandem repeat markers was conducted for obesity am

83 malian Genotyping Service at Marshfield (404 short tandem repeat markers).

84 the DPD1 gene to a 3.2-cM region flanked by short tandem repeat markers, D19S881 and D19S718.

85 es feasible with currently available sets of short tandem repeat markers, spaced at intervals as larg

86 nome using a first-generation genetic map of short tandem repeat markers.

87 oss of single nucleotide polymorphism and/or short tandem repeat markers.

88 e form of KCS was performed with polymorphic short tandem repeat markers.

89 s PCR template for a genome wide screen with short tandem repeat markers.

90 We genotyped 15 short tandem-repeat markers evenly spaced in the 112 cM

91 To map the modifier loci, we typed 811 short-tandem repeat markers ( approximately 5 cMdense) i

92 d sibling pairs with T2D using 372 autosomal short-tandem repeat markers at an average spacing of 9 c

93 Linkage analysis between short-tandem repeat markers on chromosome 19 and COPD ph

94 We genotyped 5 short-tandem-repeat markers that spanned a 4.4-centimorg

95 fferences most often due to mutations in the short-tandem-repeat markers, although some likely instan

96 ion divergence over a 6000 km distance using short tandem repeat (microsatellite) loci and allozyme l

97 logy recently evaluated the performance of a short tandem repeat multiplex with dried whole blood sta

98 files are constructed using microsatellites, short tandem repeats of 2-5 bases.

99 ses a total of 175 markers (139 genes and 36 short tandem repeats, of which 53 are fluorescence in si

100 78% of which carried long runs of degenerate short tandem repeats, often several kilobases in length,

101 r, genetic linkage analysis with polymorphic short tandem repeats on the long arm of chromosome 17 re

102 The non-B DNA structures formed by short tandem repeats on the nascent strand during DNA re

103 recovered from personal genomes by profiling short tandem repeats on the Y chromosome (Y-STRs) and qu

104 telomerase, an enzyme system that generates short, tandem repeats on the ends of chromosomes, other

105 Six novel polymorphisms, including two short tandem repeats, one 4-nucleotide insertion/deletio

106 s are amenable to subsequent DNA extraction, short tandem repeat PCR, and the generation of STR profi

107 sed as the template for PCR amplification of short tandem repeat polymorphic markers (STRPs).

108 were pooled and used as the PCR template for short tandem repeat polymorphic markers (STRPs).

109 Segregation patterns of short tandem repeat polymorphic markers from four chromo

110 Using short tandem repeat polymorphism (STR) markers with hete

111 directly sequenced to design PCR primers for short tandem repeat polymorphism (STRP) analysis of fami

112 Haplotypes consisting of alleles at a short tandem repeat polymorphism (STRP) and an Alu delet

113 amount and extent of LD among 5048 autosomal short tandem repeat polymorphism (STRP) loci ascertained

114 re examined for loss of heterozygosity using short tandem repeat polymorphism (STRP) markers.

115 Whole genome short tandem repeat polymorphism (STRP) screening showed

116 oduction with certain alleles of the IL-10.R short tandem repeat polymorphism at -4.0 kb suggested th

117 c.828+3A>T mutation, which extends from the short tandem repeat polymorphism D6S282 to c.1013G>A (rs

118 differences across the approximately 900 kb, short tandem repeat polymorphism data indicate a very re

119 Phenotypes and genotypes at 1107 short tandem repeat polymorphism markers were obtained f

120 CD4 locus on chromosome 12 that consist of a short tandem-repeat polymorphism and an Alu insertion/de

121 analyzed 16 of the t(11;22) families, using short tandem-repeat-polymorphism markers on both chromos

122 dred and thirty-one tri- and tetranucleotide short tandem repeat polymorphisms (STRPs) developed by t

123 we completed genetic linkage analysis using short tandem repeat polymorphisms (STRPs) distributed ov

124 ding single nucleotide polymorphisms (SNPs), short tandem repeat polymorphisms (STRPs), variable numb

125 Fifteen new short tandem repeat polymorphisms and 2 biallelic polymo

126 ent) in which previous linkage studies using short tandem repeat polymorphisms failed to identify a d

127 ons, and linkage analysis was performed with short tandem repeat polymorphisms flanking these genes.

128 Our purpose was to evaluate inherited short tandem repeat polymorphisms of the insulin-like gr

129 de polymorphisms (SNPs) and microsatellites (short tandem repeat polymorphisms or STRPs) are used to

130 ed in AIDS cohorts for candidate gene-linked short tandem repeat polymorphisms revealed significant g

131 n, paternity was established by analyzing 24 short tandem repeat polymorphisms.

132 Two dinucleotide short tandem-repeat polymorphisms (STRPs) and a polymorp

133 ight CEPH families; they incorporated >8,000 short tandem-repeat polymorphisms (STRPs), primarily fro

134 Using genotypes from nearly 8,000 short tandem-repeat polymorphisms typed in eight of the

135 Genotyping of Weber Screening Set 9 (387 short tandem-repeat polymorphisms with average spacing a

136 tic distances based on Alu and nuclear RSPs, short tandem-repeat polymorphisms, and mtDNA, in the sam

137 tion-site polymorphisms (RSPs), 60 autosomal short-tandem-repeat polymorphisms (STRPs), 13 Alu-insert

138 this idea, we measured associations between short-tandem-repeat polymorphisms (STRPs), which can mut

139 Estimates from short-tandem-repeat polymorphisms have negligible bias,

140 rkers with heterozygosity similar to that of short-tandem-repeat polymorphisms.

141 The short tandem repeat profile is a simple numerical code t

142 mplete autosomal STR and Y-STR (Y chromosome short tandem repeat) profiles were routinely obtained wi

143 We adopted a commercially available short tandem repeat profiling methodology to cynomolgus

144 Here, we developed STR-FM, short tandem repeat profiling using flank-based mapping,

145 These findings, together with short tandem repeat profiling, established that lot 1500

146 search institutes worldwide were analyzed by short tandem repeat profiling.

147 ytometry, immunofluorescence microscopy, and short tandem repeat profiling.

148 by overcoming the limitations of traditional short tandem repeat profiling. By embracing innovations

149 ximal sequences common to rye and wheat, the short tandem-repeat pSc119.2 and rDNA sequence pTa71, sh

150 on of each unit was measured by quantitative short tandem repeat region analysis.

151 idium genera are often equipped with several short tandem repeat regions, suggesting a wider implemen

152 Nearly single base resolution of short tandem repeats relevant to human identification is

153 rminal segment; a central segment containing short tandem repeats rich in cysteine, proline, glutamin

154 Mutations at short tandem repeat sequence loci confound interpretatio

155 forensic analyses, sex chromosomal (X and Y) short tandem repeat sequences and mitochondrial DNA sequ

156 Short tandem repeat sequences have relatively limited in

157 Overgrowth of short tandem repeat sequences in our genes can cause var

158 Microsatellites are short tandem repeat sequences that are highly prone to e

159 Instability at short tandem repeat sequences, microsatellites, is a typ

160 ates of frameshift mutations are observed in short tandem repeat sequences.

161 We propose that rearrangements between short tandem repeated sequences occur by errors made dur

162 ic DNA at the ends of chromosomes consist of short, tandem repeat sequences.

163 Short tandem repeat (STR) alleles are popular for use as

164 describe a method for the discrimination of short tandem repeat (STR) alleles based on active microa

165 able of accurately determining the length of short tandem repeat (STR) alleles.

166 he Mer knockdown lines were authenticated by short tandem repeat (STR) analysis before publication, t

167 Although short tandem repeat (STR) analysis is available as a rel

168 centration process is developed for forensic short tandem repeat (STR) analysis using a streptavidin-

169 length was determined by direct sequencing, short tandem repeat (STR) assay and Southern blotting.

170 ping community with details on commonly used short tandem repeat (STR) DNA markers.

171 Detection of short tandem repeat (STR) expansions with standard short

172 cal and neuromuscular diseases are caused by short tandem repeat (STR) expansions, with 37 different

173 ophoretic (ME) separation for rapid forensic short tandem repeat (STR) forensic profiling in a single

174 c device for amplification and separation of short tandem repeat (STR) fragments as well as an instru

175 to examine the genomic region for additional short tandem repeat (STR) genetic markers in order to cl

176 hromosome haplogroup analyses coupled with Y-short tandem repeat (STR) haplotypes were used to (1) in

177 Short tandem repeat (STR) instability causes transcripti

178 Recently, short tandem repeat (STR) length polymorphisms have been

179 mirates (UAE) were typed across 15 autosomal short tandem repeat (STR) loci (D8S1179, D21S11, D7S820,

180 polymorphisms have many advantages over the short tandem repeat (STR) loci currently used to assay g

181 ) from Yellowstone National Park, analyze 35 short tandem repeat (STR) loci for genotyping efficiency

182 cat breeds was assessed utilizing a panel of short tandem repeat (STR) loci genotyped in 38 cat breed

183 lated data based on allele frequencies in 12 short tandem repeat (STR) loci in four populations in Ar

184 , and Zambia and additionally genotyped four short tandem repeat (STR) loci that flank the lactase en

185 The PCR amplification of tetranucleotide short tandem repeat (STR) loci typically produces a mino

186 A panel of 11 short tandem repeat (STR) loci with repeat units of 1, 2

187 leotide polymorphisms (SNPs) and exactly one short tandem repeat (STR) locus.

188 ide search using a set of highly polymorphic short tandem repeat (STR) markers and 19 affected indivi

189 " cataracts segregating in a white family to short tandem repeat (STR) markers D20S847 (LOD score [Z]

190 band, as well as genotyping a battery of 387 short tandem repeat (STR) markers distributed across the

191 ory of these mutations in the AJ population, short tandem repeat (STR) markers were used to map a 9.3

192 castes is low (RST = 0.96% for 45 autosomal short tandem repeat (STR) markers), reflecting a largely

193 ome-wide search using 241 highly polymorphic short tandem repeat (STR) markers, 13 of the 14 affected

194 isible with the usual cell authentication by short tandem repeat (STR) markers.

195 al interval was established by genotyping of short tandem repeat (STR) microsatellite markers.

196 Short tandem repeat (STR) mutations are major drivers of

197 Short tandem repeat (STR) mutations are prevalent in col

198 An autosomal 10 cM genome-wide scan of short tandem repeat (STR) polymorphic markers was analyz

199 types, an autosomal 10-cM genomewide scan of short tandem repeat (STR) polymorphic markers was perfor

200 he extracted DNA was confirmed by generating short tandem repeat (STR) profiles following multiplexed

201 Short tandem repeat (STR) profiling has been routinely u

202 Short tandem repeat (STR) profiling is commonly performe

203 Genotyping based on short tandem repeat (STR) regions is used in human ident

204 Short tandem repeat (STR) RNAs play a pivotal role in th

205 alysis of an eight-loci, two-color multiplex short tandem repeat (STR) system for human identificatio

206 A short tandem repeat (STR) typing method is developed for

207 Such applications include multiplex short tandem repeat (STR) typing, which is demonstrated

208 how that non-coding mutations in a (TTTG)(4) short tandem repeat (STR) underlie dominantly inherited

209 Short tandem repeat (STR) variants are highly polymorphi

210 Short tandem repeat (STR) variation has been proposed as

211 ronic microdeletion and a highly polymorphic short tandem repeat (STR) within its breakpoints.

212 Short tandem repeat (STR), or "microsatellite", is a tra

213 and corresponding non-tumor (N) tissue using short tandem repeat (STR)-microsatellites and restrictio

214 ise from the expansion of a disease-specific short tandem repeat (STR).

215 The polymorphisms in the test data are short tandem repeats (STR) and are multi-allelic (someti

216 Functional short tandem repeats (STR) are polymorphic in the popula

217 e with real variation, like homopolymers and short tandem repeats (STR).

218 we constructed a haplotype of 10 polymorphic short tandem-repeat (STR) markers flanking the BRCA2 loc

219 e-wide scan with a set of highly polymorphic short tandem-repeats (STR) in individuals from five well

220 Short-tandem repeat (STR) allelic intensities were colle

221 A genome-wide scan of 380 short-tandem repeat (STR) markers was performed in eight

222 For definitive confirmation of trophoblasts, short-tandem repeat (STR) of the WGA-amplified content w

223 Previous studies have shown that specific short-tandem-repeat (STR) and single-nucleotide-polymorp

224 We identified polymorphisms in 15 out of 25 short-tandem-repeat (STR) loci previously selected by in

225 ll line authentication, but only one method (short tandem repeat [STR] profiling) has been the subjec

226 New short tandem repeats (STRs) and additional DNA samples w

227 y measurement of marker associations with 15 short tandem repeats (STRs) and an insertion/deletion po

228 mial infections was evaluated by genome-wide short tandem repeats (STRs) and single-nucleotide polymo

229 Short tandem repeats (STRs) and variable number tandem r

230 Short tandem repeats (STRs) are a class of rapidly mutat

231 Short tandem repeats (STRs) are a class of repetitive el

232 Short tandem repeats (STRs) are common variations in hum

233 Short tandem repeats (STRs) are consecutive repetitions

234 Short tandem repeats (STRs) are enriched in eukaryotic c

235 As expansions of CGG short tandem repeats (STRs) are established as the genet

236 Short tandem repeats (STRs) are found in many prokaryoti

237 Short tandem repeats (STRs) are highly mutable genetic e

238 Short tandem repeats (STRs) are highly polymorphic seque

239 Short tandem repeats (STRs) are highly variable elements

240 Short tandem repeats (STRs) are hyper-mutable sequences

241 Short tandem repeats (STRs) are implicated in dozens of

242 Structural variants (SVs) and short tandem repeats (STRs) are important sources of gen

243 Short tandem repeats (STRs) are mutation-prone loci that

244 Short tandem repeats (STRs) are prone to expansion mutat

245 Short tandem repeats (STRs) are widespread, dynamic repe

246 allelic profiling assay for the analysis of short tandem repeats (STRs) by using a highly optimized

247 Expansions of short tandem repeats (STRs) cause many rare diseases.

248 Short tandem repeats (STRs) compose approximately 3% of

249 Structural variants (SVs) and short tandem repeats (STRs) comprise a broad group of di

250 Short tandem repeats (STRs) consist of repeated sequence

251 Short tandem repeats (STRs) consisting of repetitive DNA

252 We show that genetic short tandem repeats (STRs) contain sufficient entropy t

253 Short tandem repeats (STRs) contribute significantly to

254 Short tandem repeats (STRs) contribute significantly to

255 Single nucleotide polymorphisms (SNPs) and short tandem repeats (STRs) differ in mutation rate and

256 Some untranslated sequence (UTR)-localized, short tandem repeats (STRs) exhibit evidence of selectio

257 Short tandem repeats (STRs) have a wide range of applica

258 Short tandem repeats (STRs) have been implicated in a va

259 pping by assessing allele frequencies of 744 short tandem repeats (STRs) in African Americans, Hispan

260 Length variation in short tandem repeats (STRs) is an important family of DN

261 pectrometry as a new approach for genotyping short tandem repeats (STRs) is demonstrated.

262 A set of 20 short tandem repeats (STRs) is used by the US criminal j

263 g single-nucleotide polymorphisms (SNPs) and short tandem repeats (STRs) on the nonrecombining portio

264 The analysis of short tandem repeats (STRs) plays an important role in f

265 Short tandem repeats (STRs) represent an important class

266 2,563 genome-wide SNPs and the other with 13 short tandem repeats (STRs) used in forensic application

267 We reported that distinct, short tandem repeats (STRs) were coupled with rigorous p

268 Over 100 biallelic markers and 19 chromosome short tandem repeats (STRs) were genotyped to produce a

269 satellites are multi-allelic and composed of short tandem repeats (STRs) with individual motifs compo

270 Short tandem repeats (STRs), also known as microsatellit

271 availability of large data sets derived from short tandem repeats (STRs), insertion deletion polymorp

272 For 2-bp microsatellites or short tandem repeats (STRs), standard deviations of +/-0

273 morphisms, short repeated sequences known as short tandem repeats (STRs), structural variants, and en

274 Identifying large expansions of short tandem repeats (STRs), such as those that cause am

275 deletion insertion polymorphisms (DIPs), and short tandem repeats (STRs), suitable for linkage or ass

276 es of engraftment based on identification of short tandem repeats (STRs), variable number of tandem r

277 a genome-wide survey of the contribution of short tandem repeats (STRs), which constitute one of the

278 l single nucleotide polymorphisms (SNPs) and short tandem repeats (STRs), Y-chromosomal STRs and the

279 NPs), insertions and deletions (indels), and short tandem repeats (STRs)--have been extensively repor

280 c profile based on polymorphic loci known as Short Tandem Repeats (STRs).

281 ders are attributed to genomic expansions of short tandem repeats (STRs).

282 ive sequences, including more than a million short tandem repeats (STRs).

283 e sequencing still has higher error rates on short-tandem repeats (STRs).

284 de polymorphisms (SNPs), microsatellites (or short tandem repeats, STRs) have received great attentio

285 leotide variations, insertions or deletions, short tandem repeats, structural variations and copy num

286 properties of structural variant classes and short tandem repeats that are associated with gene expre

287 Microsatellites are short tandem repeats that are widely dispersed among euk

288 Microsatellites are short tandem repeats that evolve predominantly through a

289 for the purpose of molecular typing by using short tandem repeats; the success rate was increased fro

290 ements of the titins and is also composed of short tandem repeats, this suggests that the repeat moti

291 lencers and enhancers between closely linked short tandem repeats TNFd and TNFe.

292 Short tandem repeats (TRs), or microsatellites, are ofte

293 by pseudoknots of antitoxic RNA, encoded by short tandem repeats upstream of the toxin gene.

294 identified single-nucleotide, structural and short tandem-repeat variants.

295 chromosome (20 biallelic polymorphisms and 5 short tandem repeats) variation in approximately 265 mal

296 leotide polymorphisms (Y-SNPs) and seventeen short tandem repeat (Y-STR) loci.

297 forensic pedigree searches with Y-chromosome short tandem repeat (Y-STR) profiling in large-scale cri

298 ther-to-son Y-transmission, higher than many short tandem repeat (Y-STRs), and showed no evidence for

299 Recombination between very short tandem repeats yields exclusively the monomeric pr

300 opulation samples by detecting Y-chromosomal short tandem repeat (YSTR) allele duplications within th