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1 the binding to the collagen triple-helix are solvent exposed.
2 C-terminal 40 residues remain disordered and solvent exposed.
3 ion buffer where the peptides are completely solvent exposed.
4 th the N- and C-termini are unstructured and solvent exposed.
5 bserved for Fd, where the [Fe4S4] cluster is solvent exposed.
6 change data reveal that the center of TM3 is solvent exposed.
7 g conformations in which the nucleotides are solvent exposed.
8 rophobic pocket while the helix and loop are solvent-exposed.
9 (residues 141-149) become substantially less solvent-exposed.
10 he hydrophobic core while, in ReAz108W it is solvent-exposed.
11 polyglutamine (polyQ) segment disordered and solvent-exposed.
12 ent, while the hydrocarbon tail is partially solvent-exposed.
13 UNAG, and has the Cys115-terreic acid adduct solvent-exposed.
14 from the N terminus appear unstructured and solvent-exposed.
15 ironment while the edges are hydrophilic and solvent-exposed.
16 erminal portion of the fusion peptide can be solvent-exposed.
17 the subunit interface, moves from buried to solvent-exposed.
18 tacts with the enzyme, and the hydroxyls are solvent-exposed.
19 ally, the adenine ring is substantially more solvent-exposed, a result that could be explained by the
20 iking feature of the structure is an unusual solvent exposed acidic pocket formed between the peptide
22 Glu69-containing molecule, revealed a unique solvent-exposed acidic pocket that includes betaGlu69 an
24 ly polymerase, which has a more spacious and solvent-exposed active site than replicative and repair
25 is HisG has been solved and reveals a large, solvent-exposed active site with subsites for ATP and PR
26 ve NADP(H) and (hydroxy)ornithine bound in a solvent-exposed active site, providing structural eviden
30 hese molecular simulations revealed that the solvent-exposed active-site architecture results in lack
32 tates of the spin-label were resolved at the solvent-exposed alpha-helical site, at residue 28; these
34 differential exchange rate constant for each solvent-exposed amide proton that is not hydrogen bonded
36 ethod relies on the irreversible labeling of solvent-exposed amino acid side chains by hydroxyl radic
38 Conversely, the THA group in fact remains solvent exposed and does not disrupt base stacking in RA
39 segment in alpha-synuclein, NAC(8-18), in a solvent exposed and extended conformation that can form
40 in the GRK2 large lobe whose side chains are solvent exposed and facing the membrane were targeted fo
41 shown to be critical for K1's function, are solvent exposed and located on a convex surface, opposit
43 motif, whereas the C-terminal SUMO target is solvent exposed and situated in a typical consensus moti
44 , or an open conformation, with Gly-734 more solvent-exposed and accessible to the PFL-AE active site
45 ore, the structurally defined N-NO moiety is solvent-exposed and available to transfer NO to a partne
46 , the phosphoinositide head groups are fully solvent-exposed and complete the LBD fold by organizing
47 orylation, resulting in a more comprehensive solvent-exposed and conformationally dynamic enzyme.
49 The altered residues in the polymerase are solvent-exposed and lie in regions that are adjacent to
50 at in each Bak dimer the N-termini are fully solvent-exposed and mobile, the core is highly structure
52 g the hypothesis that the thiol residues are solvent-exposed and not involved in disulfide bonds that
55 e it includes a poorly conserved sequence, a solvent-exposed and somewhat unstable helix and a mobile
56 he receptor, whereas its glutamate moiety is solvent-exposed and sticks out of the pocket entrance, a
58 ggesting that individual domains of hA3G are solvent-exposed and therefore may interact with other ma
59 EGCG, the Abeta(1-40) oligomers become less solvent exposed, and the beta-regions, which are involve
60 ever, the active site of PPIases is shallow, solvent-exposed, and well conserved between family membe
63 d footprinting strategy was adopted to probe solvent-exposed aspartic and glutamic acid residues on t
64 vent-exposed surfaces of the FMO by labeling solvent-exposed aspartic and glutamic acid residues.
65 igand-binding sites is bonded to a different solvent-exposed Au atom, suggesting an associative mecha
66 module nor mutations altering access to the solvent-exposed axial copper coordination site significa
68 interactions between the sidechains of these solvent-exposed basic residues and the graphene surface
70 we uncovered a point mutation (Y456T) on the solvent-exposed beta-sheet surface that allowed this dom
71 termining region 3 (CDR3H) that folds into a solvent-exposed beta-strand "stalk" fused to a disulfide
74 e stronger ( approximately 4 Hz) than in the solvent exposed C-terminal AR ( approximately 2 Hz).
77 he appearance of the first peroxidase with a solvent-exposed catalytic tryptophan to 194 +/- 70 Mya,
79 tructural model, including the presence of a solvent-exposed cavity within its transmembrane region.
80 ER server that suggests that MurJ contains a solvent-exposed cavity within the plane of the membrane.
83 with the displacement of iron atoms from the solvent-exposed cluster, suggesting that Cu(I) damages t
84 ed that Rpe employs a ferrous iron atom as a solvent-exposed cofactor and that H(2)O(2) rapidly oxidi
85 , the FAD of T. thermophilus PRODH is highly solvent-exposed compared with PutA due to a 4-A shift of
86 ally possible for Tyr106 to isomerize from a solvent exposed configuration to a buried rotameric stat
87 emplating base, the B[a]P moiety is in a non-solvent exposed conformation stacked within the DNA heli
89 xide (DMSO), the adduct is able to move to a solvent-exposed conformation, which enables error-prone
92 ein as EDTA-metal complexes by introducing a solvent-exposed cysteine residue using site-directed mut
93 human protein also contains three additional solvent-exposed cysteine residues (C95, C173, C188) that
94 eacted with a protein domain harboring three solvent-exposed cysteine residues, resulting in the in s
95 , the nanocapsid surface was modified with a solvent-exposed cysteine to conjugate monolayer protecte
97 4Fe:4S](1+) state, our analysis identifies a solvent exposed, delocalized Fe(2.5+) pair and a buried
98 ost of which are located in proximity to the solvent-exposed edge of the FMN cofactor along with othe
99 Trp-specific fluorescence, indicating a more solvent-exposed environment for the Trp residues in the
100 ix 3, helix 4, and helix 11 that move from a solvent-exposed environment to one that interacts extens
102 ydrophobic cavity upon ligand binding to the solvent exposed exterior of the LTP, facilitating proteo
103 on were overrepresented within the predicted solvent-exposed face of the LRR domain, although several
105 n internal redox rearrangement such that the solvent-exposed Fe pair becomes reduced, thereby facilit
109 lulose III(I), which increased the number of solvent-exposed glucan chain hydrogen bonds with water b
110 n of Z (but not OG) is strongly preferred at solvent-exposed guanine nucleobases at duplex ends.
111 mutant (GB1) with various amino acids at the solvent exposed guest position 53 in the internal strand
112 two distinct ring binding modes, buried and solvent-exposed, have been observed by X-ray structure a
113 hift analysis of the proton signals from the solvent-exposed headgroups of bound ligands suggests tha
114 ozyme, each containing a single p-AcPhe at a solvent-exposed helix site; the mutants were expressed i
115 in unphosphorylated Noxa, consistent with a solvent-exposed helix/loop, but strongly constrained in
119 this interaction, 13-HODE was docked to the solvent exposed histidines of a 15-hLO-2 homology model
120 where a beta-strand distortion results in a solvent-exposed hydrophobic amino acid at residue 5.
121 ate) phases], including the involvement of a solvent-exposed hydrophobic cluster and another delocali
125 eptide substrates is necessary to complete a solvent-exposed hydrophobic pocket to form the catalytic
128 ture of helix alpha1 is characterized by two solvent-exposed hydrophobic residues, F46 and L50, sugge
129 of factors V and VIII, some or all of these solvent-exposed hydrophobic residues, Trp26, Leu28, Phe3
130 targets alphaS(n) with sub-muM affinity via solvent-exposed hydrophobic sites, breaking the catalyti
132 l change, which was featured by an increased solvent-exposed hydrophobicity, while MsESAT-6 showed li
133 revealing that one of the Fe(III) sites was solvent-exposed (i.e., at an edge, corner, or defect sit
136 side chain, which is glycosylated in E2 and solvent exposed in other complexes, is slightly buried u
137 ng that many phosphorylated residues are not solvent exposed in the unphosphorylated state opens seve
138 myristoyl group attached to FCaBP is indeed solvent-exposed in both the Ca(2+)-free and Ca(2+)-bound
141 These include several residues that are solvent-exposed in the CPR crystal structure, indicating
142 as Asn-415 is buried by HCV1 and AP33, it is solvent-exposed in the HC33.1-E2(412-423) complex, such
145 hed myristoyl group at the N terminus may be solvent-exposed, in contrast to the highly sequestered m
146 f all xylose residues in the active site are solvent exposed, indicating that arabinose substituents
147 These singularities, called dehydrons, are solvent-exposed intramolecular hydrogen bonds that may b
149 rge portion of the backbone amide groups are solvent-exposed leading to fast hydrogen exchange and ca
150 is closed, a region of the binding pocket is solvent-exposed, leading to the hypothesis that it may a
152 and positions the isoaspartate residue in a solvent exposed loop that is stabilized by a MeLan ring.
154 ons in sequence at just three positions in a solvent-exposed loop greatly alter the extent of IB form
155 cid was extrapolated and incorporated into a solvent-exposed loop of a protein domain; the protein ex
156 domains have the ferredoxin-like fold and a solvent-exposed loop with a MXCXXC motif that can bind C
159 ay library of Fn3 was created in which three solvent-exposed loops were diversified in terms of amino
160 t peptide with four disulfide bonds and four solvent-exposed loops, as a scaffold for engineering pep
161 We illustrate this new strategy by labeling solvent-exposed lysine residues with commercially availa
164 n peroxide-treated sample, in contrast, four solvent-exposed Met residues in the Fc portion were comp
165 o acids without explicit activation and that solvent-exposed methionine and tryptophan residues are l
166 dule forming a foothold on the virus and the solvent-exposed module able to adapt to bind to a variet
168 e cryo-electron microscopy to reveal how the solvent-exposed moiety of a BCL6-binding molecule contri
170 , where X1,2 not equal proline) in flexible, solvent-exposed motifs; however, several native glycopro
172 p predicted a mechanical intermediate with a solvent-exposed N terminus spanning the A and B beta-str
173 ic Abeta1-42 oligomers had more flexible and solvent-exposed N-termini than Abeta1-40 oligomers.
174 a3-40/42 had significantly more flexible and solvent-exposed N-termini than Abeta1-40/42 conformation
175 ny open questions regarding the hydration of solvent-exposed non-polar tracts and pockets in proteins
177 ns suggest that the thiol groups present are solvent-exposed on a single protein surface and are too
178 tures include elongated beta-sheets that are solvent-exposed on both faces and the lack of a canonica
179 lation of cryptic cysteine residues that are solvent exposed only upon changes in protein conformatio
180 ntacts also place the NAC(8-18) segment in a solvent exposed orientation, a finding in contrast to th
181 , AlkD captures the extrahelical lesion in a solvent-exposed orientation, providing an illustration f
183 esponding to the dimer interface became more solvent exposed over time at 3 degrees C; unexpectedly,
187 s and that fibrillization is promoted by two solvent-exposed patches, which are also involved in reco
191 as associated with closure of a neighboring, solvent-exposed pocket between the extracellular poles o
193 eeply buried position in the dark state to a solvent-exposed position in the light excited state.
194 ups that are gradually pulled from a distal, solvent-exposed position into the flat, bowl-shaped S2'
196 result in semiconservative substitutions at solvent-exposed positions in the folded conformation and
197 esigned with randomized amino acids at seven solvent-exposed positions was developed from 1.6 x 10(9)
198 examined alpha --> beta substitution at four solvent-exposed positions, Asn19, Trp23, Gln26 and Lys30
199 2 of the V(H) exhibited frequent mutation in solvent-exposed positions, but conservation of common st
203 Molecular dynamics simulations show that solvent-exposed proteins (S15 and S17) tend to adopt mor
205 an incompletely formed substrate channel and solvent-exposed pyridoxal 5'-phosphate cofactor and prov
207 en the coupling constants for the buried and solvent-exposed radical are primarily caused by variatio
208 e compared to those of a previously studied, solvent-exposed radical at position 108 to identify sign
209 ed by approximately 7 cm(-1) relative to the solvent-exposed radical, and large changes in intensity
210 tease target is dictated by its flexible and solvent exposed reactive centre loop (RCL), which forms
211 pins, a protease cleaves a peptide bond in a solvent-exposed reactive center loop (RCL) of the serpin
213 the structure also reveals the presence of a solvent-exposed redox-sensitive disulphide bridge, uniqu
214 ion of the morpholine ring engaging the mTOR solvent exposed region led to the discovery of PQR626 (8
215 to engineer structural modifications in the solvent-exposed region of the ATP-binding site that sign
216 sters, we explored the chemical space in the solvent-exposed region of the enzyme catalytic binding p
217 differences are clustered in peripheral and solvent exposed regions when compared with Escherichia c
218 s: while sequons were positively selected in solvent exposed regions, they were almost completely eli
221 Q-like motifs are more frequently located in solvent-exposed regions of proteins, and that the positi
227 8 mutants of the SARS-CoV nsp1, targeting 62 solvent exposed residues out of the 180 amino acid prote
228 xtensive hydrogen-bonding network with three solvent exposed residues, linking the catalytic Fe(II) t
230 asis for the role of R242 and other critical solvent-exposed residues at the GRTH/PKA interface (E165
231 quantify the number of lipid-correlated and solvent-exposed residues by amino acid type, which furth
233 Val-131, Leu-132, and Leu-135) interact with solvent-exposed residues in the Frq1 C-terminal pocket (
234 -160, Val-161, Met-165, and Met-167) contact solvent-exposed residues in the Frq1 N-terminal pocket (
235 ine GRK1 as a guide, we generated mutants of solvent-exposed residues in the GRK1 kinase domain that
236 osine-glutamine-phenylalanine (YQF) triad of solvent-exposed residues that are displayed on the beta-
237 26 mutants wherein clusters of 1-5 putative solvent-exposed residues were changed to alanine, ultima
239 rface, featuring key charged and hydrophobic solvent-exposed residues, at the membrane-distal tip of
240 integrated alleles that target conserved and solvent-exposed residues, we identified surfaces on p35/
243 structural distortions occur: distortions in solvent-exposed seed and 3'-end regions are less likely
244 reased sequence coverage and localization of solvent-exposed segments for mass-analyzed solution-phas
245 tify multiple structural features within the solvent-exposed SF region of apoA-I of nascent HDL essen
246 5 unit, respectively, than commonly seen for solvent-exposed side chains in water-soluble proteins, i
250 lts highlight how a single substitution at a solvent-exposed site can affect the mechanism of aggrega
252 latter two phenotypes lie in two overlapping solvent-exposed sites adjacent to the sugar-binding clef
255 and are generally considered as prototypical solvent-exposed sites on the surfaces of alpha-helices.
256 n bonding interactions with the enzyme and a solvent exposed six-membered ring, consistent with its p
257 lar-pseudolamellar organization, and (3) the solvent-exposed Solar Flare loops, proposed sites of int
258 Of interest, ESR spectra of GB1 domain with solvent-exposed spin label can be accurately reproduced
259 th in silico docking calculations identified solvent-exposed STAS residues involved in nucleotide bin
263 trained TCR docking mode, an optimal peptide solvent exposed surface leading to an optimal complement
265 f nine individual sites, each located on the solvent exposed surface of the protein where structural
266 The plot of free energy against the apparent solvent-exposed surface area is given for linear alkanes
267 to each other, differing primarily in their solvent-exposed surface areas in a manner accounting for
269 of hydroxyl radicals to covalently label the solvent-exposed surface of proteins has been shown to be
271 dues ( approximately 75%) are located on the solvent-exposed surface of the complex, a number of buri
272 residues (81%) are located on the oxygenated solvent-exposed surface of the complex, several residues
273 ns have been introduced incrementally on the solvent-exposed surface of the main alpha-helix (residue
274 tal structure of ATX suggests a role for the solvent-exposed surface of the N-terminal tandem somatom
276 syndrome missense mutations map to a common solvent-exposed surface that is not expected to alter en
277 sidues were predicted to cluster on a common solvent-exposed surface, suggesting a model in which the
280 ionizable amino acid residues present on the solvent-exposed surfaces of proteins, the protein charge
281 a mass spectrometry-based method that probes solvent-exposed surfaces of the FMO by labeling solvent-
282 the chemical equivalence of the protons of a solvent-exposed tert-butyl group from Tby, the singlet r
283 irst, the central region of (CAG)(8) is more solvent-exposed than single-stranded DNA, which suggests
284 ince this strategy leaves the alkylated base solvent exposed, the means to achieve enzymatic cleavage
285 When the cyanylated cysteine side chain is solvent-exposed throughout the structural transition, it
290 in docking of the short helix III remaining solvent-exposed until after the rate-limiting transition
295 nd is anchored at both of its ends, with the solvent-exposed Watson-Crick edges of stacked bases 2 to
296 riments showed that the 2F5 epitope was more solvent exposed, whereas the 4E10 epitope was immersed i
298 vicinity of the loop, the bases become more solvent exposed, which suggests that the instability ass
299 (AppA1-126) reveals that Trp104 is partially solvent exposed while a BLUF domain containing a slightl