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1 the RNA level (such as selection for exonic splicing enhancers)?
2 dicating that CAGACAT is a functional exonic splicing enhancer.
3 itch through its interaction with the exonic splicing enhancer.
4 r mutations in exon 6 that disrupt an exonic splicing enhancer.
5 SE3 enhancer, and a potentially novel exonic splicing enhancer.
6 ciated with disruption of a consensus exonic splicing enhancer.
7 at epsilon553del7 does not disrupt an exonic splicing enhancer.
8 splicing by an A/C-rich enhancer-type exonic splicing enhancer.
9 convert the hnRNP H-U1 snRNP complex into a splicing enhancer.
10 ing is caused by the disruption of an exonic splicing enhancer.
11 ther of which appears in any other published splicing enhancer.
12 s in S. cerevisiae contain a Mer1p-dependent splicing enhancer.
13 ell-characterized Drosophila doublesex (dsx) splicing enhancer.
14 eneous nuclear ribonucleoprotein F, onto the splicing enhancer.
15 cific and depends on the presence of the dsx splicing enhancer.
16 an upstream 5' splice site functioning as a splicing enhancer.
17 that this sequence functions as an intronic splicing enhancer.
18 by countering the activity of a neighboring splicing enhancer.
19 e Delta280K mutation, which weakens the same splicing enhancer.
20 ice site, cryptic branch point and an exonic splicing enhancer.
21 ed in silico as neutralizing a putative exon splicing enhancer.
22 only one of these motifs acts as an intronic splicing enhancer.
23 peated binding sites found in Tra2-dependent splicing enhancers.
24 These could serve as intronic splicing enhancers.
25 ndidate sequences for assessment as intronic splicing enhancers.
26 ive RNA splicing mediated by multiple exonic splicing enhancers.
27 s been identified previously in a few intron splicing enhancers.
28 R proteins and/or functioning as SR-specific splicing enhancers.
29 sequences capable of functioning as pre-mRNA splicing enhancers.
30 a purine-rich sequence similar to known exon splicing enhancers.
31 clusion in regulated splicing through exonic splicing enhancers.
32 s juxtaposed immediately downstream of BPV-1 splicing enhancer 1 and negatively modulates selection o
33 plicing regulatory element in exon 3 (exonic splicing enhancer 2 (ESE2)), but we had not determined t
35 that three copies of B1 function as a strong splicing enhancer, activating an intron with suboptimal
37 taining G- to U-mutations) which had minimal splicing enhancer activity also had very weak binding ca
38 ate exons previously demonstrated to contain splicing enhancer activity as well as in the well-charac
41 ere that the purine-rich region of H-ras has splicing-enhancer activity in the homologous as well as
42 ouse, pufferfish, and zebrafish), and exonic splicing enhancers also appear broadly conserved in vert
43 the 5' end of intron 10 that functions as a splicing enhancer and causes an increase in exon 11 incl
44 ions within exon 11, we detected both exonic splicing enhancer and exonic splicing silencer elements.
47 h motif that resembles previously identified splicing enhancers and a class of A/C-rich splicing enha
48 defined by three GAA motif-containing exonic splicing enhancers and a G/GU-rich intronic splicing enh
49 demonstrate that Hu proteins can function as splicing enhancers and expand the functional role of Hu
50 uman disease genes have lower frequencies of splicing enhancers and higher frequencies of splicing si
51 ation was facilitated by higher densities of splicing enhancers and lower densities of silencers than
54 antisense oligonucleotide tiling to identify splicing enhancers and silencers in its flanking introns
55 , we identified multiple exonic and intronic splicing enhancers and silencers that regulate exon 13 i
56 was able to override the complex network of splicing enhancers and silencers that regulates the rati
58 rithm can identify different combinations of splicing enhancers and silencers without assuming a pred
59 equence, loss or gain of exonic and intronic splicing enhancers and silencers, complete intron retent
60 as splice site sequence and strength, exonic splicing enhancers and silencers, conserved and non-cons
62 in constitutive exons tend to create exonic splicing enhancers and to disrupt exonic splicing silenc
63 -nucleotide repeat elements, by heterologous splicing enhancers, and by artificially tethering a spli
64 f splicing regulatory elements, the intronic splicing enhancers, appears to differ substantially betw
66 rst direct evidence that SR protein-specific splicing enhancers are located within the coding regions
69 an transformer 2 beta (hTra2 beta; an exonic splicing enhancer-binding protein), hLucA (a potential c
71 ences in U1 binding or the density of exonic splicing enhancers but may be partially attributed to lo
72 hat engagement of the SR protein with exonic splicing enhancers can regulate phosphoryl content in th
76 plicing is activated through the activity of splicing enhancer complexes assembled on multiple repeat
77 rs bound at the 5' splice site, assembled in splicing enhancer complexes, or associated with the U4/U
79 hat although present in many of our selected splicing enhancers conforming to this motif, a typical p
81 iple SF2/ASF binding sites within the exonic splicing enhancer contribute to maximal enhancer activit
82 interaction between Tra2 beta and the exonic splicing enhancer correlates with the activity of this e
83 evolution by demonstrating that three exonic splicing enhancers derived from vertebrates (chicken ASL
85 This 24-nucleotide (nt) downstream intronic splicing enhancer (DISE) is located within intron 9 imme
86 the c-src N1 exon is mediated by an intronic splicing enhancer downstream of the N1 5' splice site.
89 ow show that the change creates a new exonic splicing enhancer element and increases the amount of fu
90 n family of splicing factors, can activate a splicing enhancer element composed of high-affinity ASF/
91 mplex that binds specifically to an intronic splicing enhancer element downstream of the neuron-speci
99 splice site of E10 is weak and requires exon splicing enhancer elements for efficient E10 inclusion.
103 a previously unrecognized multipartite exon splicing enhancer (ESE) composed of an SC35-like binding
104 hat has been attributed to loss of an exonic splicing enhancer (ESE) dependent on the SR protein spli
105 ly, we report the presence of a novel exonic splicing enhancer (ESE) element within the 5'-proximal r
109 ransition functions not to disrupt an exonic splicing enhancer (ESE) in SMN1, as previously suggested
111 enhance splicing when the palindromic exonic splicing enhancer (ESE) is mutated, indicating that TIAs
112 region around RAS Q61 is enriched in exonic splicing enhancer (ESE) motifs and we designed mutant-sp
113 tion is not the result of creating an exonic splicing enhancer (ESE) or disrupting a putative seconda
114 iously, we identified a 69-nucleotide exonic splicing enhancer (ESE) required for alpha-exon inclusio
115 e Adam17 gene that ablates a putative exonic splicing enhancer (ESE) sequence in exon 7 resulting in
116 reviously identified set of hexameric exonic splicing enhancer (ESE) sequences compared to their spli
117 nic mutations that disrupt functional exonic splicing enhancer (ESE) sequences, resulting in exon ski
118 e characterized a novel bidirectional exonic splicing enhancer (ESE) that regulates the expression of
119 ver, a C-->T substitution converts an exonic-splicing enhancer (ESE) to a silencer (ESS), causing fre
121 INE1 insertion the inactivation of an exonic splicing enhancer (ESE) within exon 6 is required for sk
123 225 3' splice site and consists of an exonic splicing enhancer (ESE), SE1, followed immediately by a
124 , for example when they inactivate an exonic splicing enhancer (ESE), thereby resulting in exon skipp
125 exonic splicing silencer (ESS) and an exonic splicing enhancer (ESE), which together determine the le
127 auxiliary cis-acting elements such as exonic splicing enhancers (ESE) and exonic splicing silencers (
128 splicing include weak 3' splice sites, exon splicing enhancers (ESE), and exon splicing silencers (E
132 stitutive SREs, since only 18% of our exonic splicing enhancers (ESEs) are contained in constitutive
139 Discrete sequence elements known as exonic splicing enhancers (ESEs) have been shown to influence b
141 the purine-rich region found multiple exonic splicing enhancers (ESEs) known to promote splicing thro
144 ave identified three novel classes of exonic splicing enhancers (ESEs) recognized by human SF2/ASF, S
145 ssors mapped four physically distinct exonic splicing enhancers (ESEs) within HIPK3-T, each containin
147 in a correlated way, whereas specific exonic splicing enhancers (ESEs), including motifs associated w
148 either cis-regulatory motifs, such as exonic splicing enhancers (ESEs), or mRNA secondary structures,
149 plicing when present in exons, termed exonic splicing enhancers (ESEs), play important roles in const
150 as being uniquely densely packed with exonic-splicing enhancers (ESEs), rendering this exon hypersens
151 atory have identified two purine-rich exonic splicing enhancers (ESEs), SE1 and SE2, located between
163 of cycled selection was used to characterize splicing enhancers for exon inclusion from a pool of bet
167 ted by TRA and TRA2 and depends on an exonic splicing enhancer (fruRE) consisting of three 13-nucleot
168 suggest that general dysregulation of Nova's splicing enhancer function may underlie the neurologic d
169 that this purine-rich region provides an RNA splicing enhancer function required for splicing inhibit
174 se data are consistent with a model in which splicing enhancers function by increasing the local conc
176 suggests that rs12718541 may be an intronic splicing enhancer, further studies are needed to determi
177 C can interfere with the function of an exon splicing enhancer in an open reading frame-dependent man
179 h conventional splicing assays to test for a splicing enhancer in exon 17 of the human MLH1 gene.
182 tem, we previously showed that a purine-rich splicing enhancer in the alternative exon functions as a
186 and GT are predicted to function as intronic splicing enhancers in fish but are not enriched in mamma
187 ector morpholino that blocked Fox2-dependent splicing enhancers in intron 16 or a splice-blocking mor
188 urine-rich region reminiscent of purine-rich splicing enhancers in other genes that stimulate the rem
189 equired a high density of GAA/CAA-containing splicing enhancers in the exonized segment and was promo
193 ed that only one of the following two exonic splicing enhancers is sufficient for inclusion of the KI
195 5' donor site that functions as an intronic splicing enhancer (ISE) required for efficient large-int
196 , exonic splicing silencers (ESSs), intronic splicing enhancers (ISEs), and intronic splicing silence
199 1 because of a crucial mutation in an exonic splicing enhancer, leading to alternative splicing and e
202 2 repeat elements that are part of an exonic splicing enhancer located immediately upstream of the fe
203 ceptors is directed exclusively by redundant splicing enhancers located in the adjacent introns.
204 pproaches underscore the relevance of exonic splicing enhancer loss and silencer gain in inherited di
205 splicing patterns by disruption of an exonic splicing enhancer may be a frequent mechanism by which p
206 ubstantially inhibited by interfering with a splicing enhancer mechanism using a target protector mor
207 e change), which lies in a suggestive exonic splicing enhancer motif in exon 1, was common only in Af
209 istics, including enrichment of hnRNPH-bound splicing enhancer motifs and a propensity for G-quadrupl
210 This method was used to isolate particular splicing enhancer motifs from a previously enriched pool
211 altering the recognition of specific exonic splicing enhancer motifs to drive recurrent mis-splicing
213 , these elements function as muscle-specific splicing enhancers (MSEs) and are the first muscle-speci
214 ple intronic elements called muscle-specific splicing enhancers (MSEs) that flank the alternative exo
215 s previously identified four muscle-specific splicing enhancers (MSEs) that promote exon inclusion sp
216 We previously described four muscle-specific splicing enhancers (MSEs) within introns flanking exon 5
217 ncing led to the identification of an exonic splicing enhancer mutation in exon 7 of CIZ1 (c.790A>G,
218 We traced this event to a mutation in a splicing enhancer of the DNA repair gene Aplf in the fis
220 r to the loss of an SF2/ASF-dependent exonic splicing enhancer or to the creation of an hnRNP A/B-dep
221 substitutions that disrupt predicted exonic splicing enhancers or create predicted exonic splicing s
223 cleotide polymorphisms (cSNPs) within exonic splicing enhancers or silencers may affect the patterns
225 mately 2,000 RNA octamers as putative exonic splicing enhancers (PESEs) based on a statistical compar
226 exons, and we propose that the Fox family of splicing enhancers plays an important role in alternativ
227 ely due to the action of a putative intronic splicing enhancer present in intron 25, which appeared t
230 n synonymous codons that are associated with splicing enhancers remains after controlling for this bi
232 how that rs6043409 alters a predicted exonic splicing enhancer, resulting in significant shifts in th
233 ontaining either a constitutive or regulated splicing enhancer revealed that U2AF35 directly mediates
235 er with molecular QTLs data, including mRNA, splicing, enhancer RNA (eRNA), and protein expression da
236 native HIV-1 splicing revealed an unexpected splicing enhancer role for hnRNP H1 through binding to i
237 BPV-1 late pre-mRNAs two purine-rich exonic splicing enhancers (SE1 and SE2) which also stimulate sp
239 tite element consisting of an AC-rich exonic splicing enhancer (SE4) and an exonic splicing suppresso
242 ding of the SF2/ASF protein to a purine-rich splicing enhancer sequence that is located in the 3' exo
243 e central RNA recognition motif to an exonic splicing enhancer sequence, a phenomenon reversed by SRP
245 e exon inclusion, SRSF1 by binding to exonic splicing enhancer sequences (ESEs) and U1 snRNPs by bind
246 ly we showed that E10 splicing involved exon splicing enhancer sequences at the 5' and 3' ends of E10
247 e regulatory specificity of predicted exonic splicing enhancer sequences that may control splicing re
251 hese SNPs, rs10185378, is a predicted exonic splicing enhancer; significant alteration in the express
252 ly spliced large exons had a higher ratio of splicing enhancers/silencers and were more conserved acr
253 the binding of RBFOX2 to downstream intronic splicing enhancers stabilizes the pre-mRNA-U1 snRNP comp
254 ice sites or accessory sequences that act as splicing enhancers, suggesting steric interference betwe
255 holino antisense oligonucleotides to the two splicing enhancers surrounding the second donor site led
256 vealed that Ins44 disrupts a putative exonic splicing enhancer that allows for skipping of exon 2, wh
258 e discovered a previously unknown structural splicing enhancer that is enriched near cassette exons w
259 studies have identified UGCAUG as an intron splicing enhancer that is frequently located adjacent to
260 RIF1-Ex32 splice-in is mediated by an exonic splicing enhancer that is recognized by the serine and a
261 splicing enhancers and a G/GU-rich intronic splicing enhancer that lies adjacent to the second donor
262 rich splicing factor arginine SRSF5, a major splicing enhancer that regulates alternative splicing.
263 ied antisense oligonucleotides targeted to a splicing enhancer that regulates STAT3 exon 23 alternati
264 h point, a polypyrimidine tract and suitable splicing enhancers-that may be distributed over hundreds
265 eam of the introns contain pre-mRNA-specific splicing enhancers, the substitution or hybridization of
266 rine/arginine-rich (SR) protein to an exonic splicing enhancer, thereby inhibiting splicing at that e
267 oaches, we found that SRSF1 and PTBP1 act as splicing enhancers to increase CD33 exon 2 inclusion in
268 e that these enhancers function as multisite splicing enhancers to specify 3' splice-site selection.
269 ed to the cryptic branch point and an exonic splicing enhancer, U7.BP + 623, was the most effective i
270 d the functional significance of an intronic splicing enhancer, UGCAUG, and its cognate splicing fact
271 n the second intron by targeting an intronic splicing enhancer using a Morpholino antisense oligonucl
272 ate the sequence specificity of these exonic splicing enhancers, various mutant SE1 or SE2 elements w
274 found that the poly-G run, a known intronic splicing enhancer, was the most significantly enriched m
275 ing of SR proteins observed on the doublesex splicing enhancer, we found that Rbp1 and Tra2 bind to t
279 t have been shown to bind a number of exonic splicing enhancers where they function to stimulate the
280 element to a region coincident with the Env splicing enhancer, which binds SR proteins, and inactiva
281 occurs within a heptamer motif of an exonic splicing enhancer, which in SMN1 is recognized directly
282 In contrast, the activity of the intronic splicing enhancer, which is necessary for PLP splicing,
283 xonic GGG motif overlapped a critical exonic splicing enhancer, which was predicted to bind the SR pr
284 1p recognizes introns that contain the Mer1p splicing enhancer, while the N-terminal domain interacts
285 exclusively recognize single-stranded exonic splicing enhancers, while RS lacks RNA-binding specifici
289 jacent to the 5' element of a bipartite exon splicing enhancer within the NS2-specific exon of minute
290 ort, we further identified 3 putative exonic splicing enhancers within exon 16 and investigated the f
291 g an inefficient splice donor from essential splicing enhancers within exon 5, with the result that i