ライフサイエンスコーパス: transpose

1 nd by as much as 56.3% and 57.8% relative to Transpose.

2 e are transpositionally competent but rarely transpose.

3 lems up to 40% larger than those solvable by Transpose.

4 lassical and by as much as 75.2% relative to Transpose.

5 ty of Tn7 elements with two Tn7 left ends to transpose.

6 and the "Mutation" labels in Figure 1b were transposed.

7 4 and 5 had mistakenly been transposed.

8 an and zebrafish is extensively inverted and transposed.

9 ation suggests that Helitrons continue to be transposed.

10 y, in that the amino and carbonyl groups are transposed.

11 but gene orders were frequently inverted and transposed.

12 e vast majority of Ty elements have recently transposed.

13 cis-acting element was altered, deleted, or transposed.

14 recently amplified and may still be actively transposing.

15 We observed that transposing 13 bp of identity from HS1 or HS3 to a new l

16 These sequences also function when transposed 3'of the Delta RPA1 coding sequence.

17 completed because of an inability to nasally transpose a previously operated-on LR muscle.

18 tion that prevented cleavage (GQE367-369NET) transposed a motif (NET291-293) that is glycosylated in

19 charomyces pombe switches its mating type by transposing a copy of unexpressed genes from the respect

20 We have developed MCScanX-transposed, a software package to detect transposed gene

21 ripts in mutant leaves, and insertion of the transposed Ac element 17 bp upstream of the start of tra

22 ted for the isolation of DNA adjacent to the transposed Ac elements (tac sites).

23 ssical and molecular genetic techniques, 158 transposed Ac elements (tr-Acs) were distributed through

24 The majority of transposed Ac elements are linked to either the bz or th

25 Transpose achieves run time and energy efficiency at the

26 ng elements, which are all nearly identical, transpose actively in an indica cell-culture line.

27 -encoding elements (called Pong), which also transpose actively in the same cells.

28 These ERV families are primate-specific and transposed actively near the time when the New World and

29 lications where the most recent duplications transpose adjacent to the centromere.

30 st to the human gfpt sequences, Tn7 does not transpose adjacent to the gfa-1 sequence, the glmS analo

31 These elements can efficiently transpose after expression of transposase from an approp

32 , there may be small DNA fragments that have transposed and are no longer in syntenous positions.

33 Ac-st2 autonomously transposes and catalyzes somatic excision of Ds elements

34 One IS3 family member, IS629, actively transposes and proliferates in EHEC O157:H7 and enteroto

35 ison to those of other vertebrates; they are transposed anteriorly and enlarged, and lie directly ven

36 cific fashion in M. smegmatis whereas Tn5367 transposed apparently randomly in M. phlei, Bacille Calm

37 ly transposed with the oldest element having transposed approximately 3.8 million years ago.

38 rterialization occurs when a vein segment is transposed as a bypass graft into the arterial circulati

39 Therefore, Ty1 multimers that transpose at a high frequency in sgs1Delta mutants are f

40 e able to isolate end sequence variants that transpose at a higher frequency than the natural ends (O

41 These mini-mariner elements transpose at high frequency in M. acetivorans to random

42 table in Arabidopsis, despite its ability to transpose at high frequency in response to a strong tran

43 ites in intronless alleles, group II introns transpose at low frequency to ectopic sites that resembl

44 ognize the corresponding human sequence, and transpose at that site.

45 ys of development indicated that mariner had transposed at high frequency into the chicken genome.

46 Finally, we show that specific gene families transposed at specific points in evolutionary time, part

47 bind differently, with their lysine residues transposed at the binding patches.

48 to a suicide vector, the modified ISPpu12-Km transposes at high frequency, often in multiple copies,

49 d' Hox-like genes; these genes may have been transposed away from an expanding cluster.

50 ylogenetic analyses show that ves1 genes are transposed between loci routinely, whereas ves2 genes ar

51 on sequence IS903 has the unusual ability to transpose both replicatively and non-replicatively.

52 7 elements containing two Tn7 right ends can transpose, but elements with two Tn7 left ends cannot.

53 ow that TEs are unexpectedly reactivated and transpose, but only in the pollen vegetative nucleus, wh

54 P elements transpose by a cut-and-paste mechanism.

55 are eukaryotic mobile genetic elements that transpose by reverse transcription of an RNA intermediat

56 eukaryotic DNA transposons, Helitron, which transpose by rolling-circle replication.

57 telomeric and nontelomeric, non-LTR elements transpose by target-primed reverse transcription, and th

58 Because they transpose by target-primed reverse transcription, each e

59 e voltage dependence of tau(deact) is simply transposed by approximately 40 mV, without a concomitant

60 in a functional assay for the ability to be transposed by MuA transposase.

61 ion, group II introns could have spliced and transposed by reverse splicing by using ubiquitous RNA c

62 far belong to a single category of elements transposed by the so-called "cut-and-paste" mechanism.

63 The maize Ac/Ds transposable element (TE) transposes by a "cut and paste" mechanism.

64 le to self-dissociate from product DNAs; Tn5 transposes by a conservative "cut and paste" mechanism;

65 eats and like other elements of this type it transposes by a cut and paste mechanism, inserts at TA d

66 Phage Mu transposes by two distinct pathways depending on the spe

67 the Bill element, indicates that it probably transposes by way of a DNA intermediate and requires fun

68 MCScanX-transposed can be also used for integrative analysis of

69 -designed approach for electronic paper that transposes coloured ink in front of or behind a white mi

70 In contrast to previous methods, we used transposed convolutions to learn the up-sampling paramet

71 mPing in A. thaliana is usually precise, and transposed copies usually insert into unlinked sites in

72 Analysis of three full-length, recently transposed copies, called mysTR elements, revealed gag,

73 rse transcription and integration of a newly transposed copy of L1, whereas the exact role of ORF1p i

74 formations allow rapid access to oxidatively transposed cyclopentenones from simple PKR products.

75 telomere-associated retrotransposons, which transpose directly to the chromosome ends and thereby pr

76 al operon guided the discovery that bacteria transpose DNA segments into new genome sites.

77 NA followed by natural transformation of the transposed DNA, large random transposon mutant libraries

78 Alternatively, disintegration removes transposed donor DNA from the intermediate.

79 occur in a bacterial cell if this operon has transposed downstream of a promoter on the bacterium's c

80 d to enrich for plants that only contained a transposed Ds element.

81 observed two mutant phenotypes in which the transposed Ds elements co-segregate with the new phenoty

82 Transposed Ds elements in plants lacking the AcTPase tra

83 plants showed that approximately 75% of the transposed Ds elements reinserted into linked locations

84 cus resulting in the recovery of independent transposed Ds insertions in approximately 4.5% of progen

85 Insertion sites of transposed Ds-ATag elements were identified through ther

86 analyzed to identify plants segregating for transposed Ds-bar elements.

87 ation site in single-copy plants showed that transposed Ds-bar inserted into single- or low-copy regi

88 rom progeny of F(2) plants with single-copy, transposed Ds-bar remained completely stable.

89 Transgene expression in F(2) plants with transposed Ds-bar was 100% stable, whereas only 23% of F

90 ent-related genes; WGD, tandem, proximal and transposed duplicates; and singleton genes.

91 ly with increasing age of duplication events-transposed duplication- and dispersed duplication-derive

92 enerants (R1) we observed that Tnt1 actively transposed during somatic embryogenesis, generating an a

93 Because the 5' end of each newly transposed element forms the end of the chromosome until

94 29 transgenic plants were found to contain a transposed element while lacking any superfluous T-DNA s

95 sequences in combination with other types of transposed elements (SINEs, LINEs, LTRs), even unannotat

96 terminal repeat-derived and LINE1-mobilized transposed elements (Tarsius interspersed elements; TINE

97 Insertion of transposed elements into introns can lead to their activ

98 In inbred ddm1 strains, transposed elements may account, in part, for mutant phe

99 ), especially in gametes that could transmit transposed elements to the next generation.

100 00-bp region lacking DNA methylation, due to transposed elements underrepresented in CpG sequences: a

101 expression levels of genes positioned within transposed elements, the new transformation method may f

102 ploiting a lack of methylation at juxtaposed transposed elements, to bind and poise chromatin for int

103 e germ-line transmission and expression from transposed elements.

104 e epigenetic regulation of non-reference and transposed elements.

105 Within other genomic regions, Minos transposes essentially at random, whereas P or piggyBac

106 The structural and functional integrity of a transposed extended P element was confirmed using molecu

107 That belief was overturned when a transposing F subfamily, T(F), was discovered.

108 Fifteen (23%) of these L1s had transposed flanking DNA with an average transduction len

109 whether a Stowaway-like MITE, termed Minos, transposes following allopolyploidization events in whea

110 ation of target DNA immediately flanking the transposed fragment, a structure like that created by re

111 this genotype indicates that Ds elements can transpose from relatively short extrachromosomal DNA mol

112 vity screening was developed, optimized, and transposed from 200mL to 10L water samples.

113 etermine whether these Yp sequences had been transposed from an autosomal ancestor, we used this trap

114 indicate that the Y copies of RhoA have been transposed from an autosome, followed by subsequent dupl

115 ication (99.4%-99.8% sequence identity) that transposed from chromosome 14 to the most proximal peric

116 enerated strains in which the lac operon was transposed from its normal position on the chromosome to

117 dder that are established when the ureter is transposed from its original insertion site in the male

118 odes a receptor for the sugar trehalose, has transposed from one such tandem cluster of six genes at

119 A recent comparison of a DNA region that was transposed from the X to the Y chromosome 3-4 million ye

120 Transposed gene duplication, a specific form of single-g

121 anX-transposed, a software package to detect transposed gene duplications that occurred within differ

122 roteins involving chromosomal function among transposed genes, suggesting that genetic conflict betwe

123 Using this large catalog of transposed genes, we detected accelerated sequence evolu

124 families, exhibited a median frequency of 5% transposed genes.

125 other gene families were composed largely of transposed genes: NB-LRR disease-resistance genes, genes

126 egions show this proclivity to duplicate and transpose genomic sequence, suggesting at least two diff

127 neurostimulators were implanted to stimulate transposed gracilis or gluteus muscle.

128 perineal sepsis requiring debridement of the transposed gracilis.

129 t ventricle (DILV) or tricuspid atresia with transposed great arteries (TA-TGA).

130 Transposing helices 9 and 10 (10/9 peptide) did not chan

131 ely matches that of a composite LTR found in transposed IAPs previously identified in the C3H strain.

132 ber of a young Alu subfamily, which recently transposed immediately downstream to a T14A11 sequence i

133 In this way DEH-ISPpu12 was shown to transpose in a broad range of Proteobacteria.

134 transposon from a vascular plant reported to transpose in a bryophyte.

135 olecular studies suggest that Ac/Ds elements transpose in a conservative non-replicative fashion; how

136 aize Activator/Dissociation (Ac/Ds) elements transpose in a wide variety of heterologous plants, but

137 m the mariner element Himar1 can efficiently transpose in bacteria in vivo.

138 study investigates a system in which aI1 can transpose in crosses (i.e., in trans).

139 IS607 was found to transpose in Escherichia coli, and analyses of sequences

140 rked with a resistance gene was found to (i) transpose in Escherichia coli; (ii) generate simple inse

141 n transplanted into heterologous species can transpose in organisms ranging from prokaryotes to proto

142 e Drosophila transposable element mariner to transpose in the chicken was tested using a plasmid carr

143 ers of the hAT (hobo, Ac, Tam3) superfamily, transpose in the yeast Saccharomyces cerevisiae, an orga

144 Here, we show that Tn7 can transpose in vitro adjacent to two potential targets in

145 mitted among diverse eukaryotes and can also transpose in vitro in the absence of added cofactors.

146 s-of-function or gain-of-function mutations, transposed in all somatic tissues tested and accelerated

147 The Tn5 derivative transposed in Anabaena at ca. 1-4 x 10(-5) per cell and

148 HimarEm1 and HimarEm2 each transposed in F. johnsoniae, and nonmotile mutants were

149 ement in any organism, but has been recently transposed in H. zea.

150 4001T transposed in M. pulmonis, and Tn4001T transposed in M. arthritidis.

151 Both Tn4001C and Tn4001T transposed in M. pulmonis, and Tn4001T transposed in M.

152 nprecedented resolution, showing that AtMu1c transposed in the Arabidopsis lineage and that transposo

153 nd three-fourths of the genes in Arabidopsis transposed in the Brassicales.

154 nsposon bearing a genetic marker is randomly transposed in vitro in genomic DNA that is then used for

155 Escherichia coli at high frequency and also transposes in E. coli.

156 Intron aI1 transposes in haploid cells at low frequency to target s

157 na tabacum) retrotransposon Tnt1 efficiently transposes in P. patens, being the first retrotransposon

158 5 retrotransposon of Saccharomyces paradoxus transposes in Saccharomyces cerevisiae at frequencies 1,

159 ve the ability to move along chromosomes or "transpose" in the genome.

160 ement lacking most of its internal sequences transposes independently of DBR1.

161 During reproduction, RescueMu transposes infrequently from the initial transgene array

162 The transposed intestinal loop was exposed to 5 Gy fractions

163 minal repeat (LTR) retrotransposons actively transpose into internal, gene-rich regions of chromosome

164 Ty1 elements transpose into random rDNA repeat units and are mitotica

165 bacterial transposon Tn7 can preferentially transpose into regions where chromosomal DNA replication

166 and its isoform IS1002 have been observed to transpose into the bvgAS locus of Bordetella pertussis,

167 Tn4555 preferentially transposed into a 589-bp genomic locus containing a 207-

168 50) gene recently captured by a Helitron and transposed into an Opie-2 retroposon.

169 ment was found between genes except where it transposed into another insertion element.

170 ncineration Directive (EU-WID) (subsequently transposed into IED) and correlations of PM10 with SO2,

171 Cleaved signal ends are also transposed into new sites in DNA, allowing RAG-induced t

172 an array of telomeric retrotransposons that transposed into the centromeric region of the Y chromoso

173 Hotspots can be transposed into the context of a frameshift reversion as

174 t deficiencies of the vein as a conduit when transposed into the coronary arterial circulation.

175 Tn917 transposed into the GAS chromosome at a frequency of (2.

176 Single-copy transposon insertions were transposed into the rat genome by co-injection of plasmi

177 This implies that Tgmr was transposed into the Rps1-k flanking site after the diver

178 (omk), a cyclophilin A (CypA) cDNA has been transposed into the TRIM5 locus, resulting in the expres

179 nt in Drosophila melanogaster preferentially transposes into nearby sites.

180 ruslike element of Saccharomyces cerevisiae, transposes into positions immediately upstream of RNA po

181 t immunity, a process that prevents Tn7 from transposing into target DNAs that already contain a copy

182 aparotomy is done to mobilize the spleen and transpose it to a s.c. pocket with its vascular pedicle

183 al evidence suggested that the only actively transposing L1 elements in the modern mouse genome were

184 vestigate the emergence of the two currently transposing L1 lineages, young A's and T(F)'s.

185 nts (our clusters 14 and 15) appears to have transposed late in hominoid evolution.

186 s can, in principle, account for contrasting transposed letter (TL) priming effects, and at the same

187 r of cache misses followed by the algorithms Transpose (Li et al.), ByRow, ByRowSegment, and ByBox (i

188 exclusively full-length elements of actively transposing LINE families, demonstrating the remarkable

189 s used to separate the evolution of actively transposing lineages of a non-LTR element from the fate

190 oftware tool written in R, which generates a transposed Manhattan plot along with additional features

191 or which Hajos-Parrish ketone isomers with a transposed methyl group (termed "iso-Hajos-Parrish keton

192 Like MuDR, TED transposes mostly to unlinked sites and can form circula

193 me region in the TIRs of all tested actively transposing Mu elements but binds poorly to the diverged

194 Humans easily recognize "transposed" musical melodies shifted up or down in log f

195 Tn10 transposes nonreplicatively.

196 w focuses on 4'-hydroxymethyl- or nucleobase-transposed nucleosides, nucleotides, and nucleoside phos

197 of all known 4'-hydroxymethyl- or nucleobase-transposed nucleosides, nucleotides, and nucleoside phos

198 s containing nucleobase- or 4'-hydroxymethyl-transposed nucleotides are discussed.

199 s containing nucleobase- or 4'-hydroxymethyl-transposed nucleotides as small oligonucleotide (e.g., h

200 ogen atom, (b) O-neophyl rearrangement which transposes O- and C-atoms of the substituent, (c) fragme

201 lated by Gaussian reduction of the augmented transpose of the stoichiometric number matrix for the sy

202 experience or the tendency to imaginatively transpose oneself into fictional characters.

203 It seems to transpose only at the second pollen mitosis because all

204 se to many chromosomal sites, HeT-A and TART transpose only to chromosome ends.

205 -LTR retrotransposons, HeT-A and TART, which transpose only to chromosome ends.

206 nsposons, sharing the remarkable property of transposing only to chromosome ends.

207 gene-rich regions of chromosomes but do not transpose onto chromosome ends.

208 erest were placed on the original images and transposed onto compressed images.

209 Conformational equilibrium constants were transposed onto the Hammett substituent constant scale r

210 Activity patterns were transposed onto three-dimensional magnetic resonance ima

211 end of the chromosome until another element transposes onto it, this nonessential sequence can buffe

212 derived from whole-genome, tandem, proximal, transposed, or dispersed duplication differ in abundance

213 t allows isolation of flies containing newly transposed P elements in the presence of the starting el

214 8-aryl-2'-deoxyguanosine derivatives with a transposed pair of methylene groups self-assemble into h

215 colonies streaked from four independent Tf1 transposed patches under nonselection conditions.

216 ited state of the carbonyl chromophore in a "transposed Paterno-Buchi" reaction is evaluated with atr

217 r representation of the algebra of partially transposed permutation operators and thus explicitly det

218 ocols and belong to the algebra of partially transposed permutation operators.

219 s demonstrate that the gyrase sites from the transposing phages possess unusual properties and emphas

220 (the enophile) to form a new product with a transposed pi-bond.

221 fabrication, and is the first ever colourant-transposing pixel that eliminates the need for ink micro

222 al genes and/or promoter elements within the transposed portion of DNA.

223 ed by 10--12 nucleotides from the 3'-end and transpose precisely between the 5'-A and T-3', with no m

224 -DNAs, we have confirmed that the Ds element transposes preferentially to genetically linked sites.

225 th piggyBac and Tol2 transposons efficiently transpose primordial germ cells.

226 Phage Mu transposes promiscuously, employing protein MuB for targ

227 are no examples of A-type elements that have transposed recently to inactivate a gene, this assay is

228 y from the initial transgene array, but once transposed, RescueMu is suitable for high throughput gen

229 hairpin formation on target DNA adjacent to transposed RSS ends in a manner consistent with a model

230 The RAG proteins are also capable of transposing RSS-ended fragments into new DNA sites.

231 The X-transposed sequences exhibit 99% identity to the X chrom

232 e elements such as Himar1 have been shown to transpose significantly more frequently when free of exo

233 The transposing species is a fragment of DNA containing a Di

234 TAHRE, which maintain Drosophila telomeres, transpose specifically onto chromosome ends to form long

235 In this study, "transposed stimuli" were used to dissociate temporal fro

236 ects on decomposition measured by DSC and by transposed temperature drop calorimetry, and both these

237 lection is higher in small-scale (tandem and transposed) than genome-scale duplicates in sorghum, but

238 somes are stable to competitor DNA, actively transpose the non-Mu DNA, and produce transposition prod

239 We use a pseudophone to transpose the sound streams arriving at the left and rig

240 We then transposed the cysteine mutation to the native receptor,

241 ergo a singlet-state photoisomerization that transposes the methylene carbon.

242 Our approach transposes the oscillator and frequency reference of a c

243 position, we developed a "SEM switch", which transposes the SEM-protecting group from one nitrogen to

244 By transposing the basic mechanistic principle of the nucle

245 eletion of the cytoplasmic domain as well as transposing the palmitoylated Cys to positions further a

246 Transposing the RTS1 element to the distal side of mat1

247 It is timely and warranted to transpose these findings to the current coronavirus dise

248 To transpose these interactions from undisturbed dental pla

249 transposons are mobile genetic elements that transpose through reverse transcription of an RNA interm

250 n (Ac/Ds) elements are able to replicate and transpose throughout the maize genome.

251 20 soybean chromosomes, indicating that Tnt1 transposed throughout the soybean genome.

252 ot analysis revealed that the copy number of transposed Tnt1 elements ranged from four to 19 insertio

253 -specific transposition machinery, generally transpose to a naturally evolved, neutral attTn7 site th

254 llelic sites, but how they are stimulated to transpose to ectopic locations on an evolutionary timesc

255 tions onto the ends of chromosomes and never transpose to internal regions of chromosomes.

256 While other non-LTR retrotransposons transpose to many chromosomal sites, HeT-A and TART tran

257 Activator (Ac) and Dissociation (Ds) tend to transpose to sites close to their original position and

258 c-Jun/c-Fos- and UV-induced activation when transposed to a heterologous promoter.

259 ast strains in which the centromere had been transposed to a new location, it was demonstrated that t

260 ry cheap, highly sensitive, and very readily transposed to a point of care.

261 lmitate was abolished if the Cys residue was transposed to a position that was 30 amino acids away fr

262 in a third mutant the co-segregating Ac had transposed to a site which was not tightly linked to the

263 gins while the remaining glandular tissue is transposed to achieve the best possible cosmetic outcome

264 ain of the mt- locus, and has duplicated and transposed to an autosome in a laboratory strain.

265 This effect can be transposed to another transcription unit, demonstrating

266 We show that Ds transposed to both linked and unlinked sites and display

267 In two of the tagged mutants Ac had transposed to closely linked sites, while in a third mut

268 Transposed to humans, our results may suggest that the p

269 The model was then transposed to long-term continuous flow simulations usin

270 d that newly duplicated genes that have been transposed to new chromosomal locations are significantl

271 y activated unsaturated systems can often be transposed to specially activated ones without loss of e

272 t, where a peripheral microtubule doublet is transposed to the center of the ciliary axoneme to repla

273 nonical C-terminal domain seems to have been transposed to the N terminus.

274 The other hemi-spleen is transposed to the s.c. position, thereby permitting subs

275 mic and molecular analyses show that JYAlpha transposed to the third chromosome during the evolutiona

276 at RBMY represents an ancestral hnRNPG gene, transposed to the Y chromosome and then amplified.

277 ments can arise at the Ac donor site when Ac transposes to another site in the genome.

278 esses two glmS genes on chromosome 1 and Tn7 transposes to both sites, although transposition to attT

279 Phage Mu DNA transposes to duplex target DNA sites with limited seque

280 ic element of Saccharomyces cerevisiae, Ty1, transposes to new genomic locations via the element-enco

281 end of the chromosome until another element transposes to occupy the terminal position.

282 egments (residues 115-136 and 282-288), when transposed together, converted mouse sensitivities to th

283 ning segments of DNA that were duplicatively transposed towards pericentromeric regions at a rate of

284 Methylation of the non-transposed transgene and its promoter, as well as a high

285 ons showed Mendelian segregation and did not transpose under normal growth conditions.

286 ropose that MITEs are genomic parasites that transpose via a DNA intermediate, which forms by a foldi

287 nd SINEs are retrotransposons; that is, they transpose via an RNA intermediate.

288 A central fragment from the transposing virus D108 allowed efficient Mu replication

289 s present in the D. melanogaster genome have transposed well after this species diverged from its clo

290 9 with tri- and tetra-(ethyleneoxy) linkages transposed were synthesized regiospecifically in high yi

291 etrotransposition selectable marker can only transpose when Tnt1 proteins are co-expressed from a sep

292 sequence evolution in duplicated genes that transposed when compared to the parental copy at the ori

293 Because Ac-Ds has been shown to transpose widely in the plant kingdom, the activation ve

294 t, other Drosophila non-LTR retrotransposons transpose widely through gene-rich regions, but not to e

295 These "frameshift transplant" mutants transpose with only a modest decrease in efficiency, sug

296 All five versions of Tf1 transposed with frequencies that were significantly lowe

297 me family as the CRM elements, also recently transposed with the oldest element having transposed app

298 can occur, and lectin repeats replicate and transpose within the gene.

299 l CRM elements indicated that these elements transposed within the last 1.22 million years.

300 nd three classes of euchromatic sequences: X-transposed, X-degenerate and ampliconic.