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4 largest of which is the D(3)(h)()-symmetric "trefoil" 2 and is composed of three [18]annulenes fused
5 e topoisomers-an unknot (0(1)) macrocycle, a trefoil (3(1)) knot(6-15), and a three-twist (5(2)) knot
7 d that the topological landscape of the beta-trefoils allows for the population of diverse, geometric
8 s, propellers, 2-solenoid, super-roll, clam, trefoil and box are not widely distributed and were prob
9 components in both PK and DSAEK groups were trefoil and coma from the anterior corneal surface (P <
10 variety of eutectic mesostructures including trefoil and hexafoil are observed, the former resembling
13 CC harbors two lectin-like domains: the beta-Trefoil and the beta-Prism domains; however, precise con
14 sitions in the pseudo-symmetric units of the trefoil, and are juxtaposed to one another in conformati
15 hanges in astigmatism, spherical aberration, trefoil, and coma with accommodation, which must arise f
16 Corneal higher-order aberrations (SA, coma, trefoil, and corneal asphericity) for a 6 mm pupil were
17 r generally poor thermal stability, the beta-trefoil architecture appears capable of substantial ther
20 linear DNAs demonstrates that the two chiral trefoils are produced in equal amounts, suggesting that
23 or (EGF-R) activation was also necessary for trefoil auto- and cross-induction, and both spasmolytic
24 ites, which are consistent with general beta-trefoil carbohydrate-binding sites (alpha, beta), and al
25 tructure and comparison with homologous beta-trefoil - carbohydrate complexes allows for a functional
26 ations and surface features of the family of trefoil cell motility factors (porcine SP, pS2, and hITF
28 an square of total higher order aberrations, trefoil, coma, tetrafoil, secondary astigmatism, and sph
29 P > 0.05), but the WF-guided group had less trefoil compared with the WF-optimized group (0.14 +/- 0
30 e N- and C-terminal regions outside the beta-trefoil core in FGF9 are ordered and involved in the for
32 he betaC'-betaE loop interacts with the beta-trefoil core region of FGF1, in the FGF1-FGFR3c structur
37 n motifs, we expressed the isolated VVH beta-trefoil domain and used glycan-chip screening to identif
38 intermolecular disulfide bonds via an extra-trefoil domain cysteine residue and are present in vivo
40 gnificant structural differences between the trefoil domain in the monomer and dimer TFF3 are in the
42 RAM domain of Notch interacts with the beta trefoil domain of CSL; however, the C-terminal domain of
45 s in loop regions within the C-terminal beta-trefoil domain which showed greatly reduced ganglioside
47 de (SP, 106 residues) form a small family of trefoil domain-containing mammalian cell motility factor
51 s compared with the TFF1 dimer where the two trefoil domains are connected by a flexible region with
52 h N-terminal mART and C-terminal tandem beta-trefoil domains associate to form an overall architectur
53 triplicated repeats in each of the four beta-trefoil domains of fascins are significantly similar in
54 eals a novel arrangement of four tandem beta-trefoil domains that form a bi-lobed structure with appr
57 the recently synthesized cycloparaphenylene trefoil E creates a more ribbon-like structure with redu
58 f strongly induced after mucosal damage, the trefoil/EGF-R relationship may be pivotal in the generat
59 e factors revealed that the human intestinal trefoil factor (ITF) gene promoter bears a previously un
60 ' flanking sequence of the murine intestinal trefoil factor (ITF) gene was found to confer goblet cel
64 GF-I, interleukin (IL)-1beta, and intestinal trefoil factor (ITF) messenger RNAs (mRNAs) were measure
65 out inducing marker genes such as intestinal trefoil factor (ITF) or myo-inositol-1-phosphate synthas
68 ially ameliorate injury including intestinal trefoil factor (ITF), a small protease-resistant peptide
70 in the intestine-specific peptide intestinal trefoil factor (ITF), in which colonic restitution is le
74 and efficacy of recombinant human intestinal trefoil factor (rhITF) administered as topical oral spra
75 eceptor (TLR) 2 and modulation of GC-derived trefoil factor (TFF) 3 are functionally linked in the in
78 ed in malignant brain tumors (DMBT1) and the trefoil factor (TFF) proteins have all been proposed to
79 d for Ki67, ER, progesterone receptor (PgR), trefoil factor 1 (PS2), HER1 (epidermal growth factor re
80 repress estrogen-stimulated transcription of trefoil factor 1 (TFF1 or pS2) by stalling RNA polymeras
81 ), comprising the regulatory elements of the trefoil factor 1 (Tff1) gene and the tamoxifen-inducible
86 -mediated induction of many genes, including trefoil factor 1 and keratin 14, were inhibited by great
87 n of the estrogen-regulated proteins PgR and trefoil factor 1, regardless of HER1/2 status (P < 0.000
91 erstood, this study investigated the role of trefoil factor 2 (TFF2), a well-established regulator of
92 o strong downregulation of the gene encoding trefoil factor 2 (Tff2), preventing maturation of the pr
93 previously identified hypomethylated genes (trefoil factor 2 and lipocalin 2) between pancreatic and
94 se tags corresponded to genes (lipocalin and trefoil factor 2) previously shown to be overexpressed i
95 his study, we demonstrate in mice that TFF2 (trefoil factor 2), an epithelial cell-derived repair mol
96 of cells that coexpressed intrinsic factor, trefoil factor 2, and Griffonia (Bandeiraea) simplicifol
99 a specialized cell type of IEC that secrete Trefoil factor 3 (TFF3) to regulate mucus viscosity and
100 munohistochemical staining for the biomarker Trefoil Factor 3 (TFF3), could be used to identify patie
101 x10(-16); MAF=0.22) in LRP2 (associated with trefoil factor 3 [TFF3]), and rs11048230 (P=4.77x10(-8);
102 a14) and masculine (cytochrome P450 4a12 and trefoil factor 3) genes, as well gender-neutral (H19 fet
103 gelatinase-associated lipocalin, cystatin C, trefoil factor 3, tissue inhibitor of metalloproteinase
104 probably because of the higher expression of trefoil factor 3, Toll-interacting protein, and zonula o
105 ion (cyclooxygenase-2 [COX-2] and intestinal trefoil factor [ITF]), and prostaglandin E2 (PGE2) level
106 ecreased apoptosis, and decreased intestinal trefoil factor expression in the mucosa of both the smal
107 observed robust regulation of the secretory trefoil factor family (TFF) members, including a causal
111 neck cells located below the isthmus express trefoil factor family 2 (TFF2) protein, TFF2 messenger R
113 cursor compartment for IPMNs and the role of Trefoil factor family 2 (TFF2)-a protein expressed by PD
114 e rapid emergence of spasmolytic polypeptide/trefoil factor family 2 (TFF2)-expressing metaplasia (SP
118 gene that encodes a peptide belonging to the trefoil factor family of protease-resistant peptides.
119 the first demonstration that a member of the trefoil factor family of proteins is bound covalently to
125 al control of GalNAc transfer by single TFF (Trefoil factor) domains as high stringency determinants.
127 nes (multidrug resistance gene-1, intestinal trefoil factor, CD73), resulting in attenuated loss of b
128 other surface molecules, such as intestinal trefoil factor, help to maintain the structural integrit
132 he genes (claudin4, lipocalin2, 14-3-3sigma, trefoil factor2, S100A4, mesothelin, and prostate stem c
135 rices consist of curli nanofibers displaying trefoil factors (TFFs), known to promote intestinal barr
136 forming growth factor, melatonin, serotonin, trefoil factors and H2S all enhance mucosal barrier func
140 hanisms in ulcer healing, the interaction of trefoil factors with the mucus gel, the interaction of g
142 rget genes upregulated by GATA-4 and -5, the trefoil factors, inhibinalpha, and disabled-2 (Dab2) are
143 talloproteinases, heat-inducible factors and trefoil factors, protective functions of submucosal mono
144 ts indicate that the global fold of the beta-trefoil family determines the energy landscape but that
147 spasmolytic polypeptide, is a member of the trefoil family of peptides and is expressed primarily in
148 can potentially be exploited for other beta-trefoil family proteins in the IL-1 and FGF families.
152 lop designer cytokine activity into the beta-trefoil fold and may be of general use in regulation of
159 interactions within the pseudosymmetric beta-trefoil fold of IL-1beta highlight the backbone water in
164 the extrinsic effect of lectin domains (beta-trefoil fold) of polypeptide GalNAc-transferases (ppGalN
166 phobic core residues that stabilize the beta-trefoil fold, as well as interfacial residues that are l
167 viously revealed that they both adopt a beta-trefoil fold, similar to those found in Kunitz soybean t
168 tor-1, a member of the 3-fold symmetric beta-trefoil fold, was subjected to a series of symmetric con
169 and contain a luminal MIR domain with a beta-trefoil fold, which is susceptive for missense mutations
175 rands, distinguishing cospin from other beta-trefoil-fold serine protease inhibitors in which beta4-b
177 the anterior corneal surface (P < 0.05) and trefoil from the posterior corneal surface (P < 0.05).
180 ed, showed reduced expression of the gastric trefoil genes SP and pS2, suggesting that trefoil peptid
181 n (HSQC) NMR spectra confirmed that the beta-trefoil global fold was largely intact under these three
182 within the immunodominant H chain as a beta-trefoil (Hcbetatre) structure; we hypothesize that induc
183 uces more negative-noded than positive-noded trefoils, indicating an asymmetry in the interaction bet
184 x months postoperatively and NCVA, while the trefoil, internal higher order aberration (HOA) and tota
186 f this tail suggests that ClpXP tightens the trefoil knot against GFP, which prevents GFP unfolding.
190 strategy for the preparation of a molecular trefoil knot from a flexible bipyridine oligomer and a z
191 ere the near-quantitative self-assembly of a trefoil knot from a naphthalenediimide-based aqueous dis
192 e stereoselective synthesis of a left-handed trefoil knot from a tris(2,6-pyridinedicarboxamide) olig
197 to show that the free energy cost to form a trefoil knot in the denatured state of a polypeptide cha
198 slipknot can be transformed into a tightened trefoil knot involving approximately 13 amino acid resid
199 ut the use of only (R,R)-1 leads solely to a trefoil knot of Lambda-handedness, whereas (S,S)-1 forms
200 ional methods to investigate the effect of a trefoil knot on the breaking strength of a polymer stran
203 ials, the acoustic fields with Hopf link and trefoil knot vortex lines have been observed experimenta
204 tein Data Bank, a previously unreported deep trefoil knot was found in acetylornithine transcarbamyla
208 the AdoMet-binding pocket, formed by a deep trefoil knot, contains a bound phosphate molecule, which
210 ll single domain protein harboring a shallow trefoil knot, we allow the protein to refold from either
217 embers of the alpha/beta-knot clan form deep trefoil knots in their native backbone structure, a topo
219 roteins considered to be knotted form simple trefoil knots with one end of the chain extending throug
220 rom small-molecule building blocks have been trefoil knots, the first pentafoil knot was recently syn
221 structures and colloidal particles, such as trefoil knots, with 'frozen' orientational order of flak
222 strategy is reported for the production of a trefoil knotted polymer from a copper(I)-templated helic
225 Here, we characterized the effects of the trefoil-knotted protein MJ0366 from Methanocaldococcus j
227 biaceae type 1 RIPs fused with a double beta trefoil lectin gene similar to the actual Cucurbitaceae
233 of macromolecules indicates that the simple trefoil or 'overhand' knot is likely to be present in an
234 y favour the formation of constructs tied in trefoil or pentafoil, or even of more exotic torus knots
236 showed the lowest values at central zone for trefoil (P = .043) and tetrafoil (P = .002) in AC group.
237 ned unchanged (P = 0.07) while the change in trefoil (P = 0.047) postoperatively, was not clinically
241 -coated pits, suggesting that integration of trefoil peptide responses may occur after internalizatio
245 to block apoptosis correlated with a loss of trefoil peptide-induced transactivation of the EGF recep
246 al anti-inflammatory agents, confirming that trefoil peptides increased the barrier properties of the
247 ic trefoil genes SP and pS2, suggesting that trefoil peptides may individually regulate transcription
248 enerating bicarbonate, mucus, phospholipids, trefoil peptides, prostaglandins (PGs), and heat shock p
249 there have been striking findings regarding trefoil peptides, the protective effect of regulatory pe
254 a are shared among other members of the beta-trefoil protein family, although clear differences can e
255 op 2/loop 3 regions, which suggest that each trefoil protein has a specific target or group of target
257 These showed that the 6.67 kDa secreted trefoil protein is present as an approximately 25 kDa co
264 have explored the sequence space of all beta-trefoil proteins and have determined that the actin-bind
265 provide statistical evidence that these beta-trefoil proteins are all homologues, having arisen from
270 ation rate of this material-template system, trefoil, quatrefoil, cinquefoil and hexafoil mesostructu
274 synthesis and characterization of star- and trefoil-shaped polyethynyl aromatic structures, which re
276 at might function either supporting the beta-trefoil structure or in the communication between both s
277 -1beta (IL-1beta) structural motif is a beta-trefoil super fold created by six two-stranded beta-hair
279 risms is varied from small lobed, big lobed, trefoil, T-shaped to a reuleaux triangle by increasing t
281 The interaction between DMBT1(gp340) and trefoil TFFs proteins was investigated using an ELISA as
283 lly important cytokine with a symmetric beta-trefoil topology, are characterized using optical spectr
287 forms, especially in the P1.1 helix and the trefoil turn in the single-stranded region connecting P4
288 that this local conformational change in the trefoil turn is kinetically coincidental with a previous
293 pair and the A-minor motif of the catalytic trefoil turn that depend on the identity of the N-1 base
298 versions of an extant protein fold (the beta-trefoil) were produced by top-down symmetric deconstruct
301 tively were vertical coma (Z3(-1)), vertical trefoil (Z3(-3)), and secondary astigmatism (Z4(4)).