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3 lly demonstrate the lack of commutability of tryptic and cleavable SIL peptides as internal calibrato
6 extraction of phosphopeptides from 40 muL of tryptic beta-casein digest using 70 mug of magnetic Ti-I
8 pectrometry because of the hydrophobicity of tryptic cleavage peptides on the one hand and the noncov
9 ease for rhEPO is compromised, as no natural tryptic cleavage site is located between the glycosylati
12 eptide products expected under commonly used tryptic conditions, we observe that peptides are formed
16 ilico identify the peptides from the E. coli tryptic digest and show the increased confidence in pept
20 okinetic elution and sample stacking using a tryptic digest of 16 proteins to maximize peptide identi
21 ilar results were obtained when evaluating a tryptic digest of a cellular lysate, representing a more
22 strated by fractionating the separation of a tryptic digest of a known protein mixture onto the micro
23 electrospray interface for the analysis of a tryptic digest of a sample of intermediate protein compl
27 peptides from injection of only 1 pmol of a tryptic digest of bovine serum albumin using an eluent f
28 illary LC for the analysis of substance P, a tryptic digest of bovine serum albumin, and a phosphopep
31 The approach is illustrated by examining a tryptic digest of cytochrome c and by identifying a pept
32 bilities of 2D FT-ICR MS are explored with a tryptic digest of cytochrome c with both ECD and IRMPD a
33 ber of peptides and proteins identified in a tryptic digest of E. coli cell lysate increased by 13% a
34 the enzyme transglutaminase 2) or the peptic-tryptic digest of gliadin (in native and deamidated form
35 selective enrichment of phosphopeptides from tryptic digest of standard protein (alpha-casein, beta-c
36 ll of reversed-phase C18 functionality) to a tryptic digest of whole Jurkat cell lysate to estimate t
37 muFFE analysis of a Chromeo P503-labeled BSA tryptic digest produced a 2D separation that made effect
38 anoLC-FAIMS-MS/MS of an unfractionated yeast tryptic digest using the modified FAIMS device identifie
39 xoid has been established by analysis of its tryptic digest using two-dimensional liquid chromatograp
40 eline resolved, and peptides from an albumin tryptic digest were much better resolved than with exist
41 t of casein phosphopeptides from a simulated tryptic digest with bovine serum albumin (BSA:casein, 10
42 ior to cleanup by immunoaffinity extraction, tryptic digest, and preconcentration by solid-phase extr
43 quantities (100 ng) of a Pyrococcus furiosus tryptic digest, but with mass-limited amounts (5 ng) CE
45 f small molecules and a bovine serum albumin tryptic digest, TASF improved the peak shape and resolut
46 tides as well as biological peptides bearing tryptic digest-like features and peptides with post-tran
54 tified and quantified the abundance of 1,056 tryptic-digested peptides, representing 163 proteins in
56 onto a polymer surface, followed by in situ tryptic digestion and comparative analysis using DESI-MS
57 on blocks lysine side chains, and subsequent tryptic digestion and N-terminal peptide derivatization
58 , ubiquitinated peptides were enriched after tryptic digestion by peptide immunoprecipitation using a
62 Our results demonstrate that LFASP-based tryptic digestion is efficient, robust, reproducible, an
63 sity coating, while the SPME protocol on the tryptic digestion of a protein supported that enzymes we
66 tion of mAbs with intact disulfide bonds and tryptic digestion of mAbs after reduction and alkylation
68 nd sequencing of phosphopeptides obtained by tryptic digestion of protein extracts from HeLa cells.
69 to dissociate ADA-drug bindings, followed by tryptic digestion of protein pellets and subsequent LC-M
71 em can realize rapid, efficient and reusable tryptic digestion of proteins by taking advantage of its
72 technique for protein separation, and in-gel tryptic digestion of resolved protein bands has enhanced
74 the determination of thiolic peptides after tryptic digestion of serum albumins from different speci
77 chromatography (IMAC), which was followed by tryptic digestion of the enriched sample and quantificat
79 ed by MALDI-TOF mass spectrometry, and their tryptic digestion products sequenced via Shotgun proteom
81 s were generated based on a previous limited tryptic digestion result and hydrogen-deuterium exchange
82 ication of 10 pg/mL, while introduction of a tryptic digestion step, followed by quantification of a
83 ids reformation of disulfide bonds to enable tryptic digestion without alkylation of cysteine residue
84 the performance of "bottom-up" (in-solution tryptic digestion), "top-down" (intact protein fragmenta
85 ltistep sample cleanup at the protein level, tryptic digestion, and isotope dilution mass spectrometr
86 atography of protein on cobalt-loaded beads, tryptic digestion, and MALDI MS analysis are performed i
88 al approach via immunoaffinity purification, tryptic digestion, and subsequent detection by HPLC-HRMS
89 only used in protein solubilization prior to tryptic digestion, but the presence of the DS(-) hampers
90 This method involves optimization of in situ tryptic digestion, followed by reproducible and uniform
91 radigm of chemical cross-linking followed by tryptic digestion, mass spectrometry, and database searc
92 h an orthogonal traceable method using total tryptic digestion, peptide separation, and isotope dilut
93 mization of the conditions of extraction and tryptic digestion, restructured meat and blank values (t
94 otocol, which includes cell lysis, overnight tryptic digestion, sample analysis and database searchin
95 by the Fe3O4@Al2O3 MNPs followed by on-plate tryptic digestion, selective enrichment, and MALDI-MS an
96 lly toxic epitopes released after peptic and tryptic digestion, showing inefficiency as a treatment t
98 re used to show that after glycinylation and tryptic digestion, the mass spectrometric response from
100 sis of a LLDGSSTEIR glycopeptide released by tryptic digestion, which carried two variant structures,
107 cular species derived from trastuzumab after tryptic digestion: a stable signature peptide (FTISADTSK
109 mics experiments rely on prefractionation of tryptic digests before online liquid chromatography-mass
110 ntiated from nonmodified peptides in complex tryptic digests created upon proteolysis of proteins aft
111 online LC-MS analysis of hemoglobin and its tryptic digests directly from microliters of blood, achi
113 s pump to perform nanoflow HPLC separations; tryptic digests of bovine serum albumin (BSA), transferr
116 sites are enriched by the modified tips from tryptic digests of horse radish peroxidase, chicken avid
118 n sites after ablation of CypD, we subjected tryptic digests of isolated cardiac mitochondria from wi
123 S) cross-linked precursors, derived from the tryptic digests of three model proteins (Human Serum Alb
124 k areas of the two transition fragments from tryptic digests of whey proteins in stored milk protein
125 furosine results indicated that MRM based on tryptic digests of whole products was a feasible method
126 ides from human serum immunoglobulin G (IgG) tryptic digests were obviously observed with greatly imp
129 m fetuin, glycophorin A, ovalbumin and gp120 tryptic digests were used to build a spectral database o
130 The strategy includes periodate oxidation of tryptic digests, solid-phase enrichment of glycopeptides
136 n of the epitope, we isolated immunoreactive tryptic fragments by Western blotting and analyzed them
137 this reagent are easily separated from other tryptic fragments using strong cation exchange chromatog
140 hieved, which led to the identification of 7 tryptic glycopeptides from HRP and 16 glycopeptides from
144 eparation and characterisation of enzymatic (tryptic) hydrolysates of water-soluble proteins from Bac
146 homology in the phosphopeptides released by tryptic hydrolysis and simulated gastrointestinal digest
147 enatured proteins were used as substrate for tryptic hydrolysis and the hydrolysis progress was chara
151 d that doxycycline can inhibit activation of tryptic KLKs through an indirect mechanism by inhibition
152 live keratinocytes during the production of tryptic KLKs, this treatment indirectly resulted in decr
155 bin in restructured meat was developed using tryptic marker peptides of TG (five markers), and bovine
156 e through identification of peptides without tryptic miscleavages or posttranslational modifications,
157 It also differs from human in resisting tryptic peptidase inhibitors (e.g., aprotinin), while fa
160 nal activation of modified lysine-terminated tryptic peptide anions is consistent with a covalent mod
161 ed multiple reaction monitoring quantitative tryptic peptide assays were developed for each phosphory
162 ein concentration was shown to be unequal to tryptic peptide concentrations for most peptides, includ
163 ometry (LC-MS) with tandem MS (MS/MS) of the tryptic peptide containing the intramolecular disulfide
164 pproach simplified the detection of glycated tryptic peptide elution in the LC/MS analysis by giving
165 ine resolve four distinct sets of Abeta17-28 tryptic peptide epimers on a rapid (~1 s) time scale.
166 to analysis by MALDI-TOF mass spectrometry, tryptic peptide fingerprinting, molecular characterizati
167 ne strong cation exchange chromatography for tryptic peptide fractionation and combining it with the
168 ectrometry/mass spectrometry analysis on the tryptic peptide fragments indicates that the 3-fluorosia
169 E to the mobile phase of nLC/MS experiments, tryptic peptide identifications increased from 93 to 111
171 ss spectrometry (IMS-MS) study revealed that tryptic peptide ions containing a proline residue at the
172 ser desorption/ionization (AP-MALDI)-derived tryptic peptide ions have been subjected to ion/ion reac
173 study the peptide QPSSSR, a very hydrophilic tryptic peptide located on the C-terminus of the G prote
177 LC-MS/MS pipeline to identify taxon-specific tryptic peptide markers for the identification of Salmon
178 roscopy, separated protein fluorescence, and tryptic peptide modification in liquid chromatography-ta
180 raction and purification were tested and the tryptic peptide pools were analysed by untargeted high r
181 single artificial protein to create internal tryptic peptide standards for MS as well as an intact pr
182 digestion and quantitation of a NGF-derived tryptic peptide via high-flow peptide immunoaffinity enr
183 s in the mass spectra of this doubly charged tryptic peptide, based solely on its amino acid sequence
184 nd MeArg were not found together on the same tryptic peptide, suggesting reciprocal regulation of the
186 oaches using selected reaction monitoring of tryptic peptides (also known as bottom up) have become c
187 d substrate ssDNA bind to the same three A3G tryptic peptides (amino acids 181-194, 314-320, and 345-
188 onditions and analyzing the MS/MS spectra of tryptic peptides allow an easy and high-throughput asses
189 meTools synthetic peptide library to 550,000 tryptic peptides and 21 million high-quality tandem mass
190 hout enrichment of glycopeptides from global tryptic peptides and at a false discovery rate of 1%, 10
191 as obtained using PACE-MSI for both digested tryptic peptides and endogenous neuropeptides from compl
196 n this study, we optimized a method to image tryptic peptides by matrix-assisted laser desorption ion
197 sp. NRC-1 and identified the sequence of 23 tryptic peptides by nano-liquid chromatography electrosp
198 ed the mass distributions of all theoretical tryptic peptides composed of 20 natural amino acids and
199 tial analysis of 20 samples containing 10 ng tryptic peptides demonstrated high reproducibility with
200 the analysis of coeluting model peptides and tryptic peptides derived from human plasma proteins, all
201 no acid pools in barley leaves and then into tryptic peptides derived from newly synthesized proteins
202 CID as the unmodified cations for the small tryptic peptides examined here and more sequence informa
205 esulting peptide anions, as demonstrated for tryptic peptides from bovine serum albumin and Halobacte
206 y, was evaluated using a mixture composed of tryptic peptides from caseins, bovine serum albumin, and
207 ed deamidation half-life for three different tryptic peptides from collagen (I) ranged from 2000 to 6
208 even (15)N-labeled QconCATs that cover seven tryptic peptides from human clusterin with a length of n
209 samples containing approximately 100 mug of tryptic peptides from mouse cerebrocortical brain tissue
210 five pH bumps were applied to elute E. coli tryptic peptides from the monolith, followed by analysis
211 derivatives and the production of different tryptic peptides from the unmodified and modified versio
216 eries of epitope sequences concatenated with tryptic peptides in a single artificial protein to creat
220 ometer and applied for the separation of the tryptic peptides of a six-protein mixture and for the pr
222 the tested BGEs, the best resolution of the tryptic peptides of extracted proteins of the above thre
224 untargeted "adductomics" method detected 50 tryptic peptides of HSA, containing Cys34 and prominent
226 MS method for the direct detection of unique tryptic peptides of the KPC protein in clinical bacteria
227 ion concatamer (QconCAT) carrying prototypic tryptic peptides of UCH-L1 was used as an internal stand
228 lyze an interference model system comprising tryptic peptides of yeast that we contaminated with huma
229 digestion with trypsin, and stabilization of tryptic peptides on solid-phase extraction sorbent.
230 times the peptides were observed relative to tryptic peptides or those guanidinated with the conventi
232 oteome level by examining the quality of the tryptic peptides prepared by on-surface nanodiamond dige
233 he LC/MS/MS analysis of the affinity-labeled tryptic peptides purified from HPLC, identified two majo
234 spectrometry analysis of >330,000 synthetic tryptic peptides representing essentially all canonical
235 mass spectrometry for the direct measure of tryptic peptides representing the amounts of specific pr
237 all isoforms of APP concatenated with those tryptic peptides that are unique for specific APP isofor
238 es were driven by the spatial orientation of tryptic peptides upon interaction with the negatively ch
239 igestion, online enrichment of IL-21 derived tryptic peptides using antipeptide antibodies, and quant
240 eptides in addition to a complex mixtures of tryptic peptides using LC-MS/MS, showing not only that A
241 arge proteomic retention data set of ~30 000 tryptic peptides was collected for each 2D pairing.
243 motifs in interacting proteins, their unique tryptic peptides were analyzed by the motif scan softwar
245 by one-dimensional gel electrophoresis, and tryptic peptides were extracted from gel slices and anal
246 ristics of these standards and collection of tryptic peptides were mapped into hydrophobicity index (
247 were digested, and evolutionarily conserved tryptic peptides were quantified using isotope-dilution
248 ction; (iii) enrichment of the biotin-tagged tryptic peptides with streptavidin; (iv) liquid chromato
249 cal lengths (e.g. shorter/longer than common tryptic peptides) and lack of tryptic residues to facili
250 tein sequence up to 28 residues, overlapping tryptic peptides, and cyanogen bromide (CNBr) peptides.
251 sotopic tags to both the N- and C-termini of tryptic peptides, and second, a search engine (based on
253 ography tandem mass spectrometry analysis of tryptic peptides, followed by searching an appropriate s
255 ~1000 proteins reliably using only 75 pg of tryptic peptides, representing a 10-100-fold sensitivity
256 nown histone H3/H4 acetylated and methylated tryptic peptides, we identified novel H3 K18 methylation
269 lision Induced Dissociation (CID) spectra of tryptic peptides], their performance often deteriorates
270 by two-dimensional thin layer chromatography tryptic phosphopeptide profiles suggested that Ser-395 w
271 ied the ratio of (18)O- versus (16)O-labeled tryptic phosphopeptide using high mass accuracy mass spe
274 gineer the sequence of EsxA to add desirable tryptic properties aimed at improving complex MS analysi
275 ntitative differences in CZE-UV profiling of tryptic protein digests were found, which can be potenti
277 evidence of T cell activation by peptic and tryptic (PT) digests of gliadins from 2 monococcum lines
278 er than common tryptic peptides) and lack of tryptic residues to facilitate peptide ionization/fragme
280 n kallikrein-related peptidase 2 (KLK2) is a tryptic serine protease predominantly expressed in prost
281 important means of evolving new functions of tryptic serine proteases from transmembrane ancestors.
286 . Pharmacopeia (USP) chapter <797> calls for tryptic soy agar with polysorbate and lecithin (TSApl) f
288 sms in double-distilled water (ddH2O) versus tryptic soy broth (TSB) to incubate disks, and incubatio
289 n several formulations of 4 different media (tryptic soy broth (TSB), brain-heart infusion (BHI), Lur
291 s and Escherichia coli O157:H7 cultivated in tryptic soy broth at 4, 22, and 35 degrees C for up to 7
293 g of two 45-min exposures per 24-h period in tryptic soy broth followed by immersion in a remineraliz
295 bapenem inactivation method (mCIM), in which tryptic soy broth was substituted for water during the i
296 ease in biofilm density in cells cultured in tryptic soy broth with 1% glucose (TSBG) when selenite w