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1 gnal amplification when they are unmodified (unmethylated).
2 sults suggest that the Ae. aegypti genome is unmethylated.
3 line where lytic viral promoters are largely unmethylated.
4 ently catalyze C2 methylation if the site is unmethylated.
5 , in D2 embryos the transgene is essentially unmethylated.
6 possibility that Dnmt2-only genomes might be unmethylated.
7 ch lytic viral gene promoters remain largely unmethylated.
8 dues within CpGs and those that were largely unmethylated.
9 d CpG islands show a strong preference to be unmethylated.
10 le promoters in IDH1/2 mutant cancers remain unmethylated.
11 in exon definition, but only when Lys-77 is unmethylated.
12 A methylation between generations and remain unmethylated.
13 d that only transformed cells contained some unmethylated 12S rRNA transcripts, with all detectable 1
14 r IFIT1, IFN-responsive genes that recognize unmethylated 2'-O RNA, resulted in restored replication
21 al for selectivity and stabilization, as the unmethylated analogue, mesoporphyrin IX, does not stabil
23 he approximately 70-repeat allele (which was unmethylated and associated with upregulation of C9orf72
24 most DNA methyltransferases operate at both unmethylated and hemi-methylated sites, BcgI methyltrans
31 toimmune hepatitis exhibited lower levels of unmethylated and methylated INS compared with subjects w
32 that absolute levels (rather than ratios) of unmethylated and methylated INS DNA differ between subje
33 sed droplet digital PCR to measure levels of unmethylated and methylated INS DNA in serum from subjec
36 mpared with control subjects, levels of both unmethylated and methylated INS DNA were elevated at T1D
40 on of CTCF binding loss in DKO ESCs, whereas unmethylated and nucleosome-depleted CpG islands were en
44 ngly, in both patients and controls, DNA was unmethylated at a CpG island in PR3, whereas in healthy
45 domain (ARD) as a reader of histone H4 tails unmethylated at K20 (H4K20me0), which are specific to ne
46 ule that specifically binds histone H3 tails unmethylated at K4 and R2 and acetylated at two key lysi
47 cruitment requires recognition of histone H4 unmethylated at lysine 20 (H4K20me0), linking DSB repair
50 on1A within a potential CpG island, which is unmethylated both in cell lines and in primary lymphoma
51 drated membranes containing trimethylated or unmethylated bovine c8-rings and bacterial c10- or c11-r
54 peri-tumoral lung tissues in which SOX30 was unmethylated, but was silenced or downregulated in lung
57 sociated Tremor Ataxia Syndrome, result from unmethylated CGG repeat expansions in the 5' untranslate
58 data also show that GC skew is predictive of unmethylated CGI promoters in a range of vertebrate spec
59 CRA gene enhancer (Ealpha) is in an open and unmethylated chromatin structure well before activation.
60 egrates sequencing reads from methylated and unmethylated compartments and estimates CpG methylation
62 ed CpG sites to current levels obtained with unmethylated copies of the DNA reveals the precise locat
63 were predictive of 5-hmC changes, suggesting unmethylated CpG and H3K4me2 as potential upstream signa
66 roducts such as lipopolysaccharide (LPS) and unmethylated CpG containing DNA to the liver via the por
68 G antibodies develop in humans against short unmethylated CpG dinucleotide sequences after administra
69 , our results suggest that a high density of unmethylated CpG dinucleotides is sufficient for vertebr
70 member of the ZF-CXXC family, which binds to unmethylated CpG dinucleotides of DNA and through enzyma
71 X CXXC domain binds DNA sequences containing unmethylated CpG dinucleotides, localizes to promoters a
77 and KDM2B, which helps target the complex to unmethylated CpG DNA islands, are required for optimal T
81 ed by the preferential binding of TET1-FL to unmethylated CpG islands (CGIs) through its CXXC domain.
83 ated with exons as compared to introns while unmethylated CpG islands near transcription start sites
85 ment with an oligodeoxynucleotide containing unmethylated CpG motif (CpG-ODN) and alanyl-glutamine in
86 x structure, which specifically binds to the unmethylated CpG motif but in a completely different man
88 Activation of TLR9 by direct injection of unmethylated CpG nucleotides into a tumor can induce a t
89 on of the TLR4 ligand LPS or the TLR9 ligand unmethylated CpG oligodeoxynucleotide before transient b
90 K plays an essential role in DC responses to unmethylated CpG oligodeoxynucleotide: although response
91 ntact sensitization and by adjuvants such as unmethylated CpG oligonucleotide (CpG) and LPS that indu
93 nthetic DNA probes that target methylated or unmethylated CpG sites in the MSP amplicon, and measures
94 gonucleotide with one hemimethylated and two unmethylated CpG sites, which are also recognition sites
100 ay a bimodal distribution with enrichment of unmethylated CpGs and depletion of fully methylated CpGs
101 CxxC finger protein 1 (Cfp1), which binds to unmethylated CpGs and links H3K4me3 with CpG islands (CG
103 abnormal methylation of a subset of normally unmethylated CpGs, a characteristic of the CpG island me
108 lfite conversion technique (i.e., converting unmethylated Cs to Us and then to Ts after PCR amplifica
111 ion to accurately estimate the parameters of unmethylated cytosine (5C), 5mC and 5hmC from Infinium m
115 lizes to methylated and, to a lesser degree, unmethylated cytosine-guanosine dinucleotides (CpGs), ye
119 Normal B cells can be activated by specific unmethylated cytosine-phosphate-guanosine (CpG) DNA moti
125 ligodeoxynucleotide CpG 7909, which contains unmethylated cytosine/guanine (CpG) motifs, has potent i
126 ted cytosines over the sum of methylated and unmethylated cytosines at position 5 (%5mC)] varied acro
128 of the key steps in the assay is converting unmethylated cytosines into thymines (BS conversion).
129 esses resulting in replacement of 5meCs with unmethylated cytosines is a hallmark of primordial germ
131 Sodium bisulfite treatment (SBT) causes unmethylated cytosines to be sequenced as thymine, which
132 ted cytosines deaminate at higher rates than unmethylated cytosines, and the lesions they produce are
133 ges, whereas lipoteichoic acid and synthetic unmethylated deoxycytidine-deoxyguanosine dinucleotides,
134 odeoxyribonucleotides (ODNs) containing CpG (unmethylated deoxycytidylyl-deoxyguanosine dinucleotide)
135 y EP300 in the bodies of expressed genes are unmethylated despite the dense gene-body methylation sur
136 Although the Npas2 promoter remains largely unmethylated, differential Npas2 promoter occupancy of a
137 ons (177-plex) using dilutions of methylated/unmethylated DNA and in DNA from clinical lung cancer sa
139 ermore, the discrimination of methylated and unmethylated DNA is demonstrated in the presence of only
141 he endonuclease reaction of these enzymes on unmethylated DNA is preceded by bidirectional translocat
143 y is sensitive to distinguish methylated and unmethylated DNA sequences at single CpG resolution by d
144 M enzymes need to interact with two separate unmethylated DNA sequences in inversely repeated head-to
145 ce with respect to relative adsorption of an unmethylated DNA source and this was detected using surf
153 onstrate that EcoKI becomes unstable on long unmethylated DNA; reuse of the methyltransferase subunit
155 a level between that of fully methylated and unmethylated exons, highlighting gene context-dependent
158 MJD2A on the latent genome maintains H3K9 in unmethylated form and signals the readiness of specific
160 conversion of 5-methyl-cytosine back to the unmethylated form, the data were consistent with the use
162 tients With Newly Diagnosed Glioblastoma and Unmethylated Gene Promoter Status; NCT00813943), and Rad
164 genes and had slower evolutionary rates than unmethylated genes, suggesting that WGD genes evolve mor
167 ethylation establishment occurs on a largely unmethylated genome and in nondividing cells, making it
168 lular differentiation in organisms that have unmethylated genomes (such as Caenorhaditis elegans and
169 een organisms that have either methylated or unmethylated genomes, DNA methylation endows genomes wit
171 ion, smtB repression significantly increased unmethylated GlcCer levels and compromised filamentous g
173 that DeltasdeA accumulated C8-saturated and unmethylated GlcCer, while gcsA deletion impaired GlcCer
175 fully methylated, partially methylated, and unmethylated groups, profiling the average DNA methylati
176 robes selective for methylation-specific and unmethylated GSTP1 sequences were immobilized onto the s
177 G-rich strands, with a binding preference of unmethylated > 5hmCpG > 5mCpG, where methylated DNA-prot
178 ne mutants that mimicked the conformation of unmethylated H3 K79 increased the rate of silencing esta
179 erence for substrates with less methylation [unmethylated H3K27 (H3K27me0):me1:me2 k(cat)/K(m) ratio
180 show that the PHD1 preferentially recognizes unmethylated H3K4 histone tail, product of KDM5A-mediate
182 s able to predict the relative abundances of unmethylated, hemimethylated, fully methylated, and hydr
184 antly inhibited by stoichiometric amounts of unmethylated histone H3, but not by histones previously
186 teraction between Dnmt3-ADD domain with H3K4 unmethylated histone tails that is disrupted by histone
187 stablish the histone code on newly assembled unmethylated histones and thus may act as epigenetic mar
188 However, it has been suggested that the unmethylated IG-DMR acts as a positive regulator activat
189 lize to Polycomb group target genes that are unmethylated in 11 different fetal tissue types, we show
193 Surprisingly, the PD-1 promoter remained unmethylated in HIV-specific CD8 T cells from subjects w
195 d that the insulin gene promoter is uniquely unmethylated in insulin-expressing pancreatic beta-cells
197 bisulfite genome sequencing; whereas, it was unmethylated in normal cervical tissues (p < 0.05).
199 We also found that the SAMHD1 promoter is unmethylated in primary CD4(+) T lymphocytes, which expr
201 at the transcriptional regulatory region was unmethylated in the PD-1(hi) HIV-specific CD8 T cells, w
202 an overlapping Pol II transcript and remain unmethylated in the presence of trans-acting 24-nt siRNA
203 tional regulatory region continued to remain unmethylated in these donor CD8 T cells generated from a
204 in secretion, indicating that the changes in unmethylated INS DNA are indicative of beta cell killing
206 a-cell death by measuring relative levels of unmethylated INS DNA in serum and used it to measure bet
207 althy controls and higher than the levels of unmethylated INS DNA in the at-risk progressor and at-ri
208 We conclude that a blood test that measures unmethylated INS DNA serves as a marker of active beta c
209 who progressed to T1D had average levels of unmethylated INS DNA that were elevated modestly compare
210 Subjects at high risk for T1D had levels of unmethylated INS DNA that were higher than those of heal
211 progressed to T1D, the observed increases in unmethylated INS DNA were associated with decreases in i
215 ns as a dual lysine reader, probing for both unmethylated K4 and methylated K9 modifications on the h
218 t to At3g43340 and At3g43350, the originally unmethylated Ler genomic segment receives the C24 (m)C p
223 producible and clearly discriminated between unmethylated, methylated and even partially methylated D
225 results offer an explanation for how and why unmethylated microsatellite repeats can be destabilized
228 lso suggest that uridylation may destabilize unmethylated miRNAs through an unknown mechanism and com
230 ltaT(m)'s for serial dilutions of methylated:unmethylated mixtures allows for quantification of methy
231 e accomplished include the discrimination of unmethylated, mono-, di-, and trimethylated lysines on a
232 rthermore, KLF4 binds specific methylated or unmethylated motifs in human embryonic stem cells in viv
235 gh expression of hepatocyte growth factor or unmethylated O(6)-methylguanine-DNA methyltransferase ma
236 n individual DNA molecules, we show that the unmethylated OCT4 distal enhancer has an NDR, whereas NA
237 y shift assays revealed increased binding of unmethylated oligos with nucleoproteins of cells maintai
238 nt homeodomain (PHD(4-6)) of MLL4 recognizes unmethylated or asymmetrically dimethylated histone H4 A
240 ong known to exist in two functional states: unmethylated or methylated at the 5-position of the pyri
241 se results suggest that MBD2 targets NuRD to unmethylated or methylated CpG islands where its distinc
242 f human DNA and 668 KB of mouse DNA that was unmethylated or methylated in order to investigate the e
246 The Kcnq1ot1 non-coding RNA emerges from the unmethylated paternal KvDMR in antisense direction, resu
248 the consequence of binding of methylated and unmethylated Pc2 to the ncRNAs TUG1 and MALAT1/NEAT2, lo
249 Here we use antibodies specific for the unmethylated phosphatases to show that PP6 is carboxyl-m
250 ased on the ability of O-methylated (but not unmethylated) precursors to bypass the BioC requirement
251 rphology, implying the presence of a pool of unmethylated prenyl proteins in these cells under normal
252 f JMJD1A facilitates efficient production of unmethylated product from dimethyl-H3K9 and decreases th
254 1 or -Dnmt3a fusion protein to methylated or unmethylated promoter sequences caused activation or sil
256 d when considering only those tumors with an unmethylated promoter, whereas the related factor, TFAP2
259 to regulate transcription of methylated and unmethylated promoters in a luciferase reporter assay.
262 -methylcytosine, 5-hydroxymethylcytosine and unmethylated proportions from methylation array data.
264 guish between methylated (petrogenic) versus unmethylated (pyrogenic) phenanthrenes; such antibodies
266 e cytosine methylation, it is less clear how unmethylated regions in mammalian genomes are protected
267 discovery rate), we found a large number of unmethylated regions not qualifying as CGIs located in i
268 lled restriction sites, whereas R recognizes unmethylated restriction sites as non-self and introduce
271 re, tethering SUVH2 with a zinc finger to an unmethylated site is sufficient to recruit Pol V and est
272 almost all Type IIB systems, BcgI needs two unmethylated sites for nuclease activity; it cuts both s
273 effect on the binding affinity of SP1 to the unmethylated sites in H9c2 cells, hearts of fetuses and
274 d target DNA methylation de novo at normally unmethylated sites in the genomes of root cells from a d
277 ncreased in linear range by concentration of unmethylated ssDNA from 1.6 x 10(-15) to 6.6 x 10(-13)M
285 designed new tools to compare methylated and unmethylated structural profiles of TFs and methods to d
288 ess 60-fold higher ISG15 compared with SULF2 unmethylated (SULF2U) NSCLC cell lines and normal human
289 he PP2A catalytic subunit, selective for the unmethylated tail and perturbing/inactivating the phosph
291 e stranded regions resulting to digestion of unmethylated targets, and leaving methylated targets int
293 istal regulatory elements are constitutively unmethylated throughout T cell differentiation, irrespec
297 iched with CpG sites, are hypomethylated and unmethylated under HG ambience and hyperglycemic states
298 TANCE The binding of ZEBRA to methylated and unmethylated viral DNA triggers activation of the EBV ly
299 wo distinct chromatin configurations: one is unmethylated with an NDR upstream of the TSS; another is
300 er-associated genomic regions and are mostly unmethylated within highly methylated mammalian genomes.