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1 the expression of miRNA-485, as a PGC1alpha upstream regulator.
2 TGF-beta1 was identified as the primary upstream regulator.
3 le evidence on the potential relevance of an upstream regulator.
4 bout how expression of Eya1 is controlled by upstream regulators.
5 compared with curated data sets to identify upstream regulators.
6 et there is little information regarding its upstream regulators.
7 sponses at the level of genes, pathways, and upstream regulators.
8 and Rictor were identified as potential key upstream regulators.
9 epair pathways and altered activities of key upstream regulators.
10 n analysis of transcription factors to infer upstream regulators.
11 s a Bayesian approach to infer corresponding upstream regulators.
12 titumor activity but circumvented control by upstream regulators.
13 e ERK1/2 activation by BCAR1/BCAR3 and other upstream regulators.
14 volves loss of duplicate copies of genes and upstream regulators.
15 ps into account to arrive at the best set of upstream regulators.
17 proinflammatory functional gene sets, while upstream regulator analysis coupled with Western blottin
26 bination of differential expression testing, upstream regulator analysis, clustering techniques, and
29 ng of group-level data used a combination of upstream regulator and coexpression network analysis, fo
31 vivo and identify Reelin as an extracellular upstream regulator and Erk1/2 as downstream effectors of
32 r-associated protein with death domain as an upstream regulator and transforming growth factor beta-a
37 ttern to that of cocaine SA with overlapping upstream regulators and downstream pathways predicted.
40 is predicted that LPS and MPLA share similar upstream regulators and have comparable effects on canon
41 d that PO differentially regulates predicted upstream regulators and pathways, including LPS, members
42 f differentially affected cellular pathways, upstream regulators and predicted miRNA-target interacti
43 biphasic regulation is due to repression of upstream regulators and promotion of AMS protein degrada
44 ebrates, we report deep conservation of both upstream regulators and segmental activity of enhancer e
47 y, we used RT-qPCR, RNA sequencing, pathway, upstream regulator, and histological analyses to demonst
48 n the Hippo field has focused on identifying upstream regulators, and a complex Hippo interactome has
49 tical role in modulating levels of KLF2, its upstream regulators, and its downstream target molecules
50 nally co-regulated mRNA subsets share common upstream regulators, and sequence elements generated by
51 entification of mRNA targets of FMRP and its upstream regulators, and the use of small molecules to s
52 , this is true even when fluctuations in the upstream regulator are far below the dissociation consta
56 e also identified top canonical pathways and upstream regulators associated with CXCL13-CXCR5 express
57 d IFN-gamma and IL-1beta as the top enriched upstream regulators associated with higher grade of immu
58 d an evolutionary shift in many of the known upstream regulators at the base of the arthropod lineage
59 nin signalling pathway, targeting up to nine upstream regulators at the same time, thus modulating th
60 ew statistical method that will infer likely upstream regulators based on observed patterns of up- an
64 tors Egr1, Atf3, Jun, Fos, and Mafb, and the upstream regulators Csf1r, Tgfb1, and Tgfbr1, which are
65 s-related pathways with LPS and cytokines as upstream regulators directly associated with heat stress
66 epigenome map, and a knockout of a predicted upstream regulator disrupts normal regeneration, validat
69 - and gain-of-function studies indicate that upstream regulators, Expanded, Merlin and Kibra, play a
71 ive RNA-binding protein RCF3 is an important upstream regulator for heat stress-responsive gene expre
73 support for shared dysregulated pathways and upstream regulators for two brain regions in human ASD b
74 s significant under expression of atrogenes, upstream regulators (FOXO1, FOXO3, NFKB1A), key componen
75 CN5L1 liver specific knockout mice and their upstream regulator, FoxO1 protein levels are decreased v
77 involving the MYC locus or mutations of its upstream regulators, how c-MYC expression is induced and
79 okine G-CSF (r(2)=0.0683, p < 0.05), and its upstream regulator IL-17 (r(2)=0.0891, p < 0.05) both co
80 of the top diseases, functions, pathways and upstream regulators implied that a common underlying mec
82 on, and demonstrate differential activity of upstream regulators in different subcellular domains.
85 les indicated that several anti-inflammatory upstream regulators, including transforming growth facto
86 , NF-kappaB, complement, IL-6 signaling) and upstream regulators (INFgamma, IL-1beta, NF-kappaB, MYD8
88 responsive to nutrient stress, including the upstream regulator KLF15, aminoacid catabolizing enzymes
90 RNA interference of MLC-4, as well as of its upstream regulators, LET-502 (Rho-associated coiled-coil
91 ng of a dicitrate transporter fecBCDE and an upstream regulator likely for iron uptake, whereas the o
92 he membrane lipid transporter ABCA1, and its upstream regulator Liver X receptor (LXR) in the macroph
93 hat location-specific activation by distinct upstream regulators may enable distinct functional outpu
94 ) was used to identify enriched pathways and upstream regulators.Measurements and Main Results: Respo
95 f ATC and suggest that ASH1L, along with its upstream regulator miR-200b-3p and its downstream mediat
96 ibit ABCB1 is to target its cancer-specific, upstream regulators, mitigating damage to normal tissue.
100 wn of vacuolar H+-ATPase 12 (vha-12) and its upstream regulator, nuclear hormone receptor 31 (nhr-31)
101 Brat represses the translation of src64B, an upstream regulator of a conserved Rho-dependent pathway
102 cytosolic form of Gpx4 was identified as an upstream regulator of a novel form of non-apoptotic cell
104 Our study indicates MIF is a central and upstream regulator of ADPKD pathogenesis and provides a
105 tion, we have identified a tension-sensitive upstream regulator of alpha-actinin-4 as synaptopodin.
108 This study identifies PKCzeta as a novel key upstream regulator of BA-regulated SHP function, reveali
110 results show that ROCK1 acts as a prominent upstream regulator of Beclin1-mediated autophagy and mai
111 sive cytoplasmic adapter molecule that is an upstream regulator of both IkappaB kinase (IKK) and c-Ju
113 by inhibiting mTOR, placing mTOR as a novel upstream regulator of caspase-2 and supporting the possi
115 tified cyclin-dependent kinase (CDK) 6 as an upstream regulator of CDK2 controlling SAMHD1 phosphoryl
116 ctor AP-2gamma (TFAP2C) functions as a novel upstream regulator of Cdx2 expression and position-depen
118 ations demonstrate that GflB is an essential upstream regulator of chemoattractant-mediated cell pola
119 nscription factor E2F3 (E2F3) as a prominent upstream regulator of cocaine-induced changes in gene ex
122 molog of the mammalian MAGI scaffolds, is an upstream regulator of E-Cad-based AJs during cell rearra
123 , these findings define DEPTOR as a critical upstream regulator of EC activation responses and sugges
126 d a novel regulatory mechanism of MSI2 as an upstream regulator of ESR1 and revealed the clinical rel
127 findings reveal mitochondrial dynamics as an upstream regulator of essential mechanisms governing ste
129 threonine-specific kinase p38 as a druggable upstream regulator of FOXC2 stability and function that
130 synthase kinase-3 (GSK3) was found to be an upstream regulator of FoxM1 because GSK3 inhibition or r
136 , we identify the ABL2 tyrosine kinase as an upstream regulator of HSF1 protein expression and show t
138 helix-loop-helix (bHLH) transcription factor Upstream Regulator of IRT1 (URI) acts as an essential pa
139 uman peripheral blood cells and to define an upstream regulator of its activation through the release
140 In the present study, we identified the upstream regulator of Jab1/Csn5 expression and demonstra
141 hese data demonstrate that DLK is a critical upstream regulator of JNK-mediated neurodegeneration dow
142 itor of DNA binding protein 2 (ID2) as a key upstream regulator of KDR activation during myeloid diff
143 A2 transcription factor was identified as an upstream regulator of miR-194, consistent with a strong
144 hioredoxin-interacting protein (TXNIP) as an upstream regulator of miR-204, we also assessed whether
148 ough Raptor-associated mTORC1 is a known key upstream regulator of mRNA translation, initiation and e
149 s analysis has identified p120-catenin as an upstream regulator of neurogenesis and cell cycle pathwa
151 Collectively, our results uncover MLK4 as an upstream regulator of NF-kappaB signaling and a potentia
152 ticular, c-MYC was identified as a candidate upstream regulator of OGT target genes and OGT inhibitio
154 ough CDC42 has previously been considered an upstream regulator of Pak2, we found a paradoxical decre
155 cers, indicative of DNA methylation being an upstream regulator of phylotypic enhancer function.
156 vious findings that cell surface GRP78 is an upstream regulator of PI3K/AKT signaling, we show here t
160 identifies CHD7 as a previously unrecognized upstream regulator of Reln, and provides direct in vivo
162 F breakpoint cluster region (Bcr) as a major upstream regulator of RhoA activity, stress fibers, and
163 variants, we provide evidence that Nck is an upstream regulator of RhoA-dependent, MMP14-mediated bre
166 our data suggest that Mesp-b is an intrinsic upstream regulator of skeletal muscle progenitors and th
167 , our data indicate that OsMADS26 acts as an upstream regulator of stress-associated genes and thereb
168 e ubiquitin-modifying enzyme TNFAIP3/A20, an upstream regulator of T cell receptor (TCR) signaling in
170 primary response (MyD)88 pathway was crucial upstream regulator of TAK-1 and NF-kappaB p50/p65 activa
173 rved an attenuation of NF-kappaB pathway, an upstream regulator of the aforementioned genes, concomit
174 e recapitulated by mutations in Expanded, an upstream regulator of the conserved Hippo pathway, and m
175 led that Pals1 functions as a dose-dependent upstream regulator of the crosstalk between Hippo- and T
176 ed ataxia telangiectasia mutated protein, an upstream regulator of the DDR pathway, and we found a si
177 rferon gamma was identified as a significant upstream regulator of the expression changes for RR and
179 rexpression increased expression of PAR1, an upstream regulator of the Hippo pathway; PAR1 promotes i
181 uction in neurofibromin 2/Merlin protein, an upstream regulator of the Hippo signaling pathway, at le
183 onclude that alpha6 integrin is an essential upstream regulator of the IGF-1R survival pathway that r
184 LEAFY-like genes in Welwitschia, could be an upstream regulator of the MADS-box genes APETALA3/PISTIL
185 testicular development, thereby acting as an upstream regulator of the male pathway in P. sinensis.
186 res a bidirectional promoter with MAP3K4, an upstream regulator of the MAPK signaling pathway, and re
187 rter of EMT, we discovered that S100A4 is an upstream regulator of the master EMT regulators SNAIL2 a
189 monstrates that alpha2M*/CS-GRP78 acts as an upstream regulator of the PDK1/PLK1 signaling axis to mo
191 findings support the notion that BAG2 is an upstream regulator of the PINK1/PARKIN signaling pathway
192 studies have demonstrated that cyclin D1, an upstream regulator of the Rb/E2F pathway, is an essentia
194 nflammatory cytokine that acts as a critical upstream regulator of the SA secretory phenotype (SASP).
195 NB1 is an integral component and not only an upstream regulator of the spindle checkpoint pathway.
196 Thus, Pitx2 has long been considered as an upstream regulator of the transcriptional hierarchy in e
197 Another recent study predicted E2F3 as an upstream regulator of the transcriptional response to co
198 and identifies Hedgehog signaling as a novel upstream regulator of their prosensory function in the m
199 The transcription factor CREB is a predicted upstream regulator of this network and binds to the Zfp1
204 ation factor 6 (ARF6), a small G protein and upstream regulator of type I phosphatidylinositol phosph
206 initiated by lysophosphatidic acid (LPA), an upstream regulator of Yap that can cause fetal haemorrha
209 effectors of ATR have been established, the upstream regulators of ATR and the effect of such regula
210 binding proteins cofilin and VASP, which are upstream regulators of conformational integrin changes.
212 all regulatory RNAs (microRNAs) that control upstream regulators of cytoskeletal proteins are also in
213 ta signaling and a network of four miRNAs as upstream regulators of DeltaNp63, providing key informat
214 Nck-interacting kinase (TNIK or MAP4K7), as upstream regulators of DLK/JNK signaling in neurons.
216 n factors NAC25 and NAC1L were identified as upstream regulators of EXPA2 expression, gibberellin-med
218 teins in different developmental contexts as upstream regulators of Hox genes-as factors that interac
222 ) dual-specificity phosphatases as potential upstream regulators of ischemic neuronal death and Cdk4
224 vations highlight Chk1 and STAT3 as critical upstream regulators of KIM-1 expression after AKI and ma
229 mponents of the gamma-secretase complex, are upstream regulators of multiple cellular pathways via re
232 l border specifiers Pax3 and Zic1 are direct upstream regulators of neural crest specifiers Snail1/2,
233 rial function directly by phosphorylation of upstream regulators of PGC-1alpha and subsequently decre
235 ving regeneration gene expression as well as upstream regulators of regeneration are identified and v
239 he storage product of excess cholesterol, as upstream regulators of Tau early during AD development.
240 use of integrative analyses for identifying upstream regulators of the affected downstream molecular
243 lated or its relationship to the other known upstream regulators of the Hippo pathway remains poorly
244 High-confidence ASD risk genes emerge as upstream regulators of the network, and many risk genes
246 Recently, oncogenic mutations in NRAS/KRAS, upstream regulators of the RAF/MEK/ERK pathway, have bee
247 eleasing Factor 1 (RasGRF1) and 2 (RasGRF2), upstream regulators of the Ras-ERK signaling cascade, on
248 g growth factor-beta, and IL-13 as potential upstream regulators of the serum protein patterns in the
249 y, to create membrane domains that partition upstream regulators of the TORC1 and TORC2 signaling pat
250 Although many mysteries remain about the upstream regulators of these changes, we review the core
251 A TGFbeta-regulated miRNA network acted as upstream regulators of this oscillatory expression of De
252 nuity Pathway Analysis demonstrated that the upstream regulators of type I and type III interferons,
253 n factor that modulates the transcription of upstream regulators of WNT and MAPK-ERK signaling to saf
255 hat this approach can correctly identify the upstream regulator on expression data sets for which the
257 oma, only a handful of lincRNAs are known as upstream regulators or downstream effectors of oncogenes
258 t this regulation occurs not at the level of upstream regulators or primary cilia, but rather at the
262 updosing detected minimal changes to pathway/upstream regulator profiles despite 32.5% symptom reduct
264 overed cell-type heterogeneity and predicted upstream regulator proteins that mediate cell survival,
265 ences in the expression or function of their upstream regulators, providing insights into the genetic
266 sub-networks and the connections with their upstream regulator receptors to obtain a systems view of
267 nd microtubule-associated proteins; however, upstream regulators remain controversial due to the conf
268 viously unrecognized roles for GPR10 and its upstream regulator REST in the pathogenesis of uterine f
269 abling convergent advection of MyoII and its upstream regulators Rho1 GTP, Rok and MyoII phosphatase.
271 (DNMT3a) in human cancer, the nature of its upstream regulator(s) and relationship with the master c
275 This is all the more important since it is upstream regulators such as this that need to be directl
276 s was undisturbed, depletion of G3BP1 or its upstream regulator TDP-43 disturbed normal interactions
277 ne-triggered activation of NF-kappaB and its upstream regulator TGF-beta-activated kinase-1 in murine
278 s response networks frequently have a single upstream regulator that controls many downstream genes.
279 e Bayesian network can be queried to suggest upstream regulators that can be causally linked to the a
280 genes (DEGs), over-represented pathways, and upstream regulators that contribute to kidney disease pr
283 identification of a repertoire of intrinsic upstream regulators that drive the dopaminergic stress r
285 geting endothelin and angiotensin, which are upstream regulators that promote VSM contraction, was no
286 in the core autophagy machinery and describe upstream regulators that respond to extracellular and in
287 Early transcriptomic changes and predicted upstream regulators that were found in all three procedu
288 icrodeletions encompassing p190RhoGAP or its upstream regulator, the Abl2/Arg tyrosine kinase, have b
290 ied, little is known about the role of their upstream regulators, the Rho guanine nucleotide exchange
291 ce of ANAC019, suggesting that ANAC019 is an upstream regulator these genes for drought response and
292 rrelations associated with expression of the upstream regulators TSC1, TSC2, AKT, p-AKT, PDPK1, PTEN,
294 WNK1 increases the expression of the PI3KC3 upstream regulator unc-51-like kinase 1 (ULK1), its phos
296 Our results suggest that Arp2/3 and the upstream regulator, WAVE2, are essential co-factors hija
299 dentified transcription factor USF2 as their upstream regulator, which was also increased in nonrespo
300 triiodothyronine (reverse) were inferred as upstream regulators with differences in incidence and st