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1 Hypoxanthine was a weaker inhibitor than uracil.
2 ious results that demonstrated inhibition by uracil.
3 responsible for the proton-driven uptake of uracil.
4 ansformants that grow on agar plates lacking uracil.
5 e to produce adenine, guanine, cytosine, and uracil.
6 cluding Drosophila, are incapable of binding uracil.
7 in incomplete conversion of intermediates to uracil.
8 te resonance form for residue bound 1-methyl-uracil.
9 he dynamic spatio-temporal nature of genomic uracil.
10 superfamily are essential for the removal of uracil.
11 (Vif) by deaminating viral cDNA cytosines to uracils.
12 infected individuals also contained abundant uracils.
13 elity by catalyzing the removal of mutagenic uracils.
14 hich converts cytosines in switch regions to uracils.
15 nduced APOBEC3A/APOBEC3B to increase genomic uracils.
16 id expressing APOBEC3A acquired more genomic uracils.
21 ndings relating to the function of the human uracil-5 methyltransferase (U5MT), TRMT2A, and its inter
22 gnated as Endonulcease Q (EndoQ), recognizes uracil, abasic site and xanthine, as well as hypoxanthin
23 nucleosides did not affect maternal hepatic uracil accumulation in DNA but did affect plasma folate
24 obulin (Igh) gene deamination as measured by uracil accumulation occurs primarily in early G1 after c
25 howed that SMUG1 efficiently prevent genomic uracil accumulation, even in the presence of UNG, and id
26 e et al. (2015) reveal how pathogen-secreted uracil acts at two steps to induce ROS via the Hedgehog
28 nstrate that mammalian cells can incorporate uracil analogs and characterize the enzymatic pathways r
30 the impact of SMUG1 deficiency, we measured uracil and 5-hydroxymethyluracil, another SMUG1 substrat
31 and -7-deazaguanine as well as 5-substituted uracil and cytosine 2'-deoxyribonucleosides and mono- an
34 higher than 10(9) M(-1) s(-1), while in the uracil and tert-butyluracil analogues, k(q) was markedly
36 egradation was observed at the hydroxymethyl uracil and tricyclic guanidine groups; uracil moiety cle
38 rocesses non-helix distorting lesions (e.g., uracils and gaps) and is composed of two subpathways tha
39 ncrease of the choline derivative compounds, uracil, and free amino acids, and a large decrease of ta
40 ucleic acids, is highly specific for thymine/uracil, and maintains and slightly stabilises the canoni
42 converts cytosines in single-stranded DNA to uracil, and mutations in a variety of human cancers are
43 Its role is to bind to DNA, locate unwanted uracil, and remove it using a base flipping mechanism.
44 Simulations were performed in the absence of uracil, and resulted in a closed state of the transporte
45 n UNG-null cells causes a buildup of genomic uracil, and the ensuing lethality requires processing of
46 les, aminoisoxazole, aminoisothiazole, amino uracils, and aliphatic enamines has been developed in an
50 ines (fluorouracil, capecitabine, or tegafur-uracil as single agents, in combination with other antic
51 on the post-transcriptional modification of uracil at position 8 (U8) of tRNAs by the 4-thiouridine
54 ccine strains, such as type I nonreplicating uracil auxotroph mutants, are highly effective in elicit
55 onreverting, nonreplicating, live attenuated uracil auxotroph vaccine strains in the type II Deltaku8
61 ed, contrary to current ideas, that cellular uracil base excision repair (UBER) enzymes target and cl
62 lated viral DNA products are degraded by the uracil base excision repair (UBER) machinery with less t
63 ity were also observed with RNA pol II using uracil base excision repair (UBER)-deficient human cells
68 on study on the ultrafast photorelaxation of uracil, based on a quantum description of the nuclei.
69 Here, we describe new 1-(omega-phenoxyalkyl)uracils bearing acetanilide fragment in 3 position of py
70 id, arginine, N1-acetylspermidine, xanthine, uracil, betaine, symmetric dimethylarginine, and asymmet
73 thase inhibitor (raltitrexed), which induces uracil but not 5-FU accumulation, thus indicating that g
74 guanine over adenine, cytosine, thymine and uracil, but this selectivity is extraordinarily amplifie
75 initiated through deamination of cytidine to uracil by activation-induced cytidine deaminase (AID).
76 o not significantly contribute to removal of uracils by uracil DNA glycosylase regardless of the tran
80 convert cytosines in single-stranded DNA to uracils, causing base substitutions and strand breaks.
81 s expressing AID at high levels have genomic uracils comparable to those seen with stimulated UNG(-/-
83 f-assembly and self-organization behavior of uracil-conjugated enantiopure (R)- or (S)-1,1'-binaphthy
84 cient enzyme that can remove uracil from any uracil-containing base pairs including the A/U base pair
88 AR9 is a giant Bacillus subtilis phage whose uracil-containing double-stranded DNA genome encodes dis
89 D4 binds weakly to nonspecific DNA and to uracil-containing substrates but binds abasic sites with
90 sured, including plasma nucleosides, hepatic uracil content, maternal plasma folate concentrations, a
91 east and discovered significant variation in uracil content, wherein uracil is excluded from the earl
92 Furthermore, this protein- and hence the uracils created by A3A- colocalize with replication prot
94 yzes the conversion of unpaired cytosines to uracils, creating permanent genetic tags for the positio
95 ubunit (APOBEC) enzymes convert cytosines to uracils, creating signature mutations that have been use
98 han are removed from the genome but that the uracil creation/excision balance is restored during esta
99 ance, such as the utility of the pyrimidine (uracil) degradation metabolites in predicting 5-fluorour
100 actions of free and hydrogen bonded 1-methyl-uracil demonstrate the relationship between the degree o
101 antiport mechanism and SLC25A36 cytosine and uracil (deoxy)nucleoside mono-, di-, and triphosphates b
103 ormation of unsymmetrical N,N'-disubstituted uracil derivatives can occur, the methodology demonstrat
104 t active compounds were the N(3)-substituted uracil derivatives containing 6-(4-bromophenoxy)hexyl or
106 A short and efficient one-pot synthesis of uracil derivatives with a high structural variability is
108 from Thermus thermophilus HB8 is not only a uracil DNA glycosyase acting on G/U, T/U, C/U, and A/U b
109 measured the probability that nuclear human uracil DNA glycosylase (hUNG2) excised two uracil lesion
112 y positioned 2'-deoxyuridine (dU) residue by uracil DNA glycosylase (UDG) and apurinic/apyrimidinic e
116 ils in the Ig gene loci can be recognized by uracil DNA glycosylase (UNG) or mutS homologs 2 and 6 (M
118 g uracil-guanine mismatches are processed by uracil DNA glycosylase (UNG)-mediated base-excision repa
119 nteractions with base excision repair enzyme uracil DNA glycosylase (UNG2) and crossover junction end
122 imilar to the recruitment of another target, uracil DNA glycosylase (UNG2), to the CRL4-DCAF1 E3 by V
123 ells can be selectively killed by inhibiting uracil DNA glycosylase 2 (UNG) and that this synthetic l
125 time quantitative PCRs (qPCRs) targeting the uracil DNA glycosylase gene (udg) or the 23S rRNA gene a
126 ficantly contribute to removal of uracils by uracil DNA glycosylase regardless of the translational o
129 ties of two model enzymes, exonuclease I and uracil DNA glycosylase with high sensitivity and selecti
134 ed Cas9 nickase, an Escherichia coli-derived uracil DNA N-glycosylase (eUNG) and a rat APOBEC1 cytidi
135 The present biosensor is able to detect both uracil DNA N-glycosylase (UNG) and AP-endonuclease 1 (AP
137 -induced cytidine deaminase are processed by uracil-DNA glycosylase (UNG) and mismatch repair (MMR) p
138 e excision repair (BER), either initiated by uracil-DNA glycosylase (UNG) or by single-strand selecti
142 created by AID/APOBEC enzymes, here we used uracil-DNA glycosylase and an alkoxyamine to covalently
143 us, and the VACV D4 protein serves both as a uracil-DNA glycosylase and as an essential component req
147 nockdown of SMUG1 or thymine-DNA glycosylase uracil-DNA glycosylases, proving that it is base excisio
148 moieties of Poly A nanocapsules and thymine/uracil does not affect the fluorescence of poly A nanoca
151 een with peripheral B cells and have nuclear uracil excision activity comparable to that seen with st
153 f-life of UNG2, reduces the rate of in vitro uracil excision, and slows UNG2 dissociation from chroma
154 o prevent this from happening in most cases, uracil exhibits an ultrafast relaxation mechanism from t
155 suggests that the C4-alkoxide (enol form of uracil) facilitates coupling by participation in the int
158 n extremely efficient enzyme that can remove uracil from any uracil-containing base pairs including t
159 n in MUG not only accelerates the removal of uracil from mismatched base pairs but also enables the e
163 he preferential access of mismatch repair or uracil glycosylase (UNG) to AID-initiated U:G mismatches
164 ctivator-like effector array proteins, and a uracil glycosylase inhibitor resulted in RNA-free DddA-d
165 and third-generation base editors that fuse uracil glycosylase inhibitor, and that use a Cas9 nickas
167 ults demonstrate that Pms2/Mlh1 and multiple uracil glycosylases act jointly, each one with a distinc
168 ations at A-T bases depend on two additional uracil glycosylases, thymine-DNA glycosylase and SMUG1.
171 ted enriched MTHFD1 in the nucleus, elevated uracil in DNA, lower rates of de novo dTMP synthesis, an
173 We applied the Excision-seq method to map uracil in E. coli and budding yeast and discovered signi
174 vidence for a direct transcription arrest by uracil in either of the two settings because the vectors
175 ontaneous deamination of cytosine, producing uracil in pyrimidine dimers, followed by monomerization
176 best known for deaminating cytosine bases to uracil in single-stranded DNA, with characteristic seque
177 mutations through deamination of cytosine to uracil in single-stranded HIV-1 (-) DNA is the dominant
178 late synthase and causes the accumulation of uracil in the genome, whereas FdUTP is incorporated by D
179 eatures shows that non-treated cells possess uracil in the late replicating constitutive heterochroma
180 ould cooperate with MMR by excising a second uracil in the vicinity of the U:G mismatch, but it faile
182 ed deaminase (AID) converts DNA cytosines to uracils in immunoglobulin genes, creating antibody diver
183 singly, there was little increase in genomic uracils in PMA-treated wild-type or uracil repair-defect
188 d that AID generates few and mostly isolated uracils in the switch region, although processive AID de
190 y 5 UDGb can also act as an enzyme to remove uracil incorporated into DNA through the existence of dU
191 e pairs allows the MUG-K68N mutant to remove uracil incorporated into the genome during DNA replicati
192 thymidylate biosynthesis and lead to genomic uracil incorporation contributing to their antiprolifera
193 ication forks and the deleterious effects of uracil incorporation into DNA from thymidine-deficient n
195 integrity by preventing misincorporation of uracil into DNA, which results in DNA toxicity and cell
196 hypermutation (SHM) of immunoglobulin genes, uracils introduced by activation-induced cytidine deamin
197 ificant variation in uracil content, wherein uracil is excluded from the earliest and latest replicat
198 and an intermediate for antibody maturation, uracil is primarily processed by base excision repair (B
200 anics (QM/MM) models of the UDG active site, uracil is strongly polarized when bound to UDG and resem
201 nes on the displaced strand of the D-loop to uracil, leaving a permanent signature for the displaced
202 the ensuing lethality requires processing of uracil lesions (likely U/G mispairs) by MSH2 and MLH1 (l
203 or genomes, the majority of APOBEC-catalyzed uracil lesions are probably counteracted in an error-fre
205 n uracil DNA glycosylase (hUNG2) excised two uracil lesions spaced 10-80 bp apart in a single encount
206 thesis in a dose-dependent manner, increased uracil levels in nuclear DNA, and increased genome insta
210 (-/-) mice showed a synergistic increase in uracil levels with up to 25-fold higher uracil levels th
215 his "tautomeric strain" raises the energy of uracil, making uracilate a better than expected leaving
217 rget of arsenic trioxide (As2O3), leading to uracil misincorporation into DNA and genome instability.
219 ARP inhibitors, methyl-methanesulfonate, and uracil misincorporation, which reflects the need to remo
221 ethyl uracil and tricyclic guanidine groups; uracil moiety cleavage/fragmentation and further ring-op
224 DA heterozygotes (AID+/-), and patients with uracil N-glycosylase (UNG) deficiency, which impairs CSR
230 s of 5-(2-furyl, or 2-thienyl, or 2-pyrrolyl)uracil nucleosides, which are used as important RNA and
232 eceptor characterized by some as a dualistic uracil nucleotide/cysteinyl leukotriene receptor and by
234 d broad regions with elevated probability of uracil occurrence both in treated and non-treated cells.
236 The expression constructs contained a single uracil opposite an adenine (to mimic dUTP misincorporati
237 ear isoform of UNG, catalyzes the removal of uracil or 5-fluorouracil lesions that accumulate in DNA
239 aimed to uncover genome-wide alterations in uracil pattern upon drug treatments in human cancer cell
240 ) stress, a defect in the trafficking of the uracil permease, alpha-syn accumulation and foci, and a
244 iouracil (TU) in cells expressing transgenic uracil phosphoribosyltransferase (UPRT), a method known
245 nsgenic mice that express cell-type-specific uracil phosphoribosyltransferase (UPRT), an enzyme requi
246 TK(SR39) mutants), yeast cytosine deaminase:uracil phosphoribosyltransferase (yCD:UPRT) and nitrored
250 brational spectroscopy of the dehydrogenated uracil radical is obtained by a dipole-bound state with
252 d in an Escherichia coli strain defective in uracil repair (ung mutant), and the mutations that accum
253 electrochemical sensing of 8-oxoguanine and uracil repair glycosylase activity within DNA monolayers
257 he ability to synthesize the 5-amino-ribityl-uracil riboflavin precursor and to activate polyclonal a
258 of PcUP1 in ligand-free and in complex with uracil/ribose-1-phosphate, 2'-deoxyuridine/phosphate and
259 ne tract and closely associated Cytosine and Uracil-rich (CU-rich) sequences, upstream of the mini-ex
260 ds a subpopulation of mRNAs characterized by uracil-rich 3'-untranslated regions under normoxic condi
261 Higher expression in NGS was discovered for uracil-rich miRNAs (p = 7 x 10(-37)), while high express
262 During hypoxia, UBP1C association with non-uracil-rich mRNAs is enhanced concomitant with its aggre
263 natural hosts, expresses seven small nuclear uracil-rich non-coding RNAs (called HSURs) in latently i
264 N-propargylation of the N3 position of its uracil ring resulted in a vast reduction of its biologic
266 of Cid1 that provides detailed evidence for uracil selection via the dynamic flipping of a single hi
267 n in complex with a PAN RNA MRE, revealing a uracil specific binding site that is also conserved in K
269 sulting path reveals an extensive network of uracil-specific interactions spanning the first 12 nucle
274 Unmethylated cytosines may be converted to uracil through the addition of sodium bisulphite, allowi
275 ameters demonstrate that SLC25A33 transports uracil, thymine, and cytosine (deoxy)nucleoside di- and
276 idine deaminase (AID) converts cytosine into uracil to initiate somatic hypermutation (SHM) and class
278 ug treatment induced a shift of incorporated uracil towards segments that are normally more active/fu
279 ture with a substrate-bound structure of the uracil transporter UraA in an inward-facing conformation
280 ate domain, similar to the previously solved uracil transporter UraA, which belongs to the same famil
281 l importance is a bifurcation point at which uracil triphosphate is partitioned towards either nucleo
283 se APOBEC3F (A3F) deaminates cytosine (C) to uracil (U) and is a known restriction factor of HIV-1.
284 esis of C-4'-spiro-oxetanoribonucleosides of uracil (U) and thymine (T) in 37 and 45% overall yields,
288 f the main OPV attenuating mutations such as uracil (U) to cytosine (C) at nucleotide 472 in the 5' n
289 ffect of three thymine (T) analogs including uracil (U), 5-fluorouracil (5FU) and 5-hydroxymethylurac
291 ed a protein that covalently links to DNA at uracils, UdgX, for mammalian expression and immunohistoc
293 = 6.3 mum, and H = 7.7 mum were obtained for uracil (unretained), butyrophenone (k = 0.85), and valer
294 equent glycosylation reaction with activated uracil via C-1 phosphate and installation of the cyclic
296 in direct evidence for the presence of these uracils, we engineered a protein that covalently links t
297 terize its ability to convert cytosines into uracils, we tested several derivatives of APOBEC3B gene
298 alous X-ray diffraction label (5-selenophene uracil), which enables the correlation of RNA conformati
299 First, the copper-catalyzed coupling of uracil with aryl iodides, employing picolinamide 16 as t