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1 ls chained together in an operation called a workflow.
2 or trace samples), into a top-down proteomic workflow.
3 -gene epistasis through a two-stage modeling workflow.
4 on for routine medical decisions into clinic workflow.
5 alytical and clinical performance as well as workflow.
6 enzymes, Nepenthesin II (NepII), in a HDX-MS workflow.
7 eproducibility and costs in the complete NGS workflow.
8 glycogen is measured within the metabolomics workflow.
9 run individually or together in an automated workflow.
10 , without perturbing the existing diagnostic workflow.
11 lustering should be the foremost step of the workflow.
12 not dependent on RPPA platform and analysis workflow.
13 iterature, leading to a universal autonomous workflow.
14 3D cell environment in a fully automated HTS workflow.
15 ssay optimization and streamlining the assay workflow.
16 ems that are employed in the same analytical workflow.
17 causing genes were prioritised in a stepwise workflow.
18 ial and fungal species using a sub-60-minute workflow.
19 tic loss of signal for the standard clinical workflow.
20 s the rate-limiting step of the experimental workflow.
21 of clinical expertise and multiple clinical workflows.
22 ily implemented in standard and microfluidic workflows.
23 gistical challenges which interrupt surgical workflows.
24 critical step in volatile compound analysis workflows.
25 be readily integrated into existing droplet workflows.
26 andardised and readable statistical analysis workflows.
27 staple of network-based gene classification workflows.
28 tforms using distinct instrument set-ups and workflows.
29 andable Dockerfiles for typical data science workflows.
30 and are now integral to medicinal chemistry workflows.
31 not an established part of many experimental workflows.
32 g for easy implementation in decontamination workflows.
33 the WSH scores for integration into analysis workflows.
34 or machine-driven medicinal chemistry design workflows.
35 proteome coverage and have relied on manual workflows.
36 ns as an automated part of existing internal workflows.
37 engineering, drug discovery, and diagnostic workflows.
38 t to implement a GCxGC approach into routine workflows.
39 ding the need to work toward more integrated workflows.
40 designs, assembly plans, samples, data, and workflows; 2) developing new technologies for data curat
41 To construct the optimization informatics workflow, a number of critical components had to be subj
42 ting stable isotope-labeled standards, these workflows allow the determination of endogenous protein
46 rotocol was embedded in a shotgun-proteomics workflow and applied to serum spiked with the sulfopepti
47 ased genotype array coupled with an analysis workflow and database for the most speciose genus of cor
51 struction that is divorced from the everyday workflow and practices within laboratories and is design
54 describes the GlyGen data model, processing workflow and the data access interfaces featuring progra
55 was integrated into a liquid chromatography workflow and used to evaluate profiles of sites of unsat
57 le describes predominant methods of studying workflow and workarounds and provides examples of the ap
59 n two use cases: (i) integration with Galaxy workflows and (ii) using Epiviz to create a custom genom
60 However, coordinating and integrating the workflows and large teams necessary for gigabase genome
61 ons provide valuable guidance on choosing ML workflows and their tuning to generate well-calibrated C
62 networks at different stages of the analysis workflow, and compared these to established computer vis
64 s health are poorly integrated with clinical workflows, and have rarely produced actionable biometric
65 n steps, limit the throughput of high-volume workflows, and prevent the harmonization of diverse expe
67 ures, modification of laboratory/pathologist workflows, appropriate reimbursement/cost-offsetting mod
68 owever, some adjustments of the metabolomics workflow are needed before HRMS-based methods can detect
71 dard, we validate RNA extraction and RT-qPCR workflows as well as two detection assays based on CRISP
76 ata, we present and validate a computational workflow based on kallisto and bustools, that utilizes r
77 this, here we describe a buffer modification workflow (BMW) in which the same sample is run by LC-MS
79 tend an established targeted data extraction workflow by inclusion of the ion mobility dimension for
82 ased on these SNP markers were combined in a workflow called the Standard Tools for Acroporid Genotyp
84 show that a randomized splint ligation based workflow can reduce bias and increase the sensitivity of
85 ults demonstrate how standard mass cytometry workflows can be modified to perform high-throughput mul
87 d described each tracking package based on a workflow centred around tracking data (i.e. spatio-tempo
89 Hence this simple, versatile and informative workflow could be applicable for routine diagnostic test
97 ects of the cryo-EM single-particle analysis workflow (e.g., sample preparation, image acquisition an
98 line fractionation strategies, our optimized workflow effectively eliminated the need for sample desa
101 n to the field, covering the basic radiomics workflow: feature calculation and selection, dimensional
103 eloped here offers a robust and reproducible workflow for accurately determining PG composition in sa
104 Here, we show an N. gonorrhoeae diagnostic workflow for analysis of metagenomic sequencing data obt
106 ward this goal, here we present a convenient workflow for cryo-EM structural analysis of MPs embedded
107 s the development and application of a novel workflow for designing and fabricating orthoses, using a
111 ransplantation, a unique, highly coordinated workflow for image acquisition and processing was design
113 ucleic Acids from RDTs) approach; a complete workflow for large-scale molecular malaria surveillance.
114 In our study, we developed an integrated workflow for multiplex analysis of global, glyco-, and p
115 developed Dropception, a robust, easy-to-use workflow for precise single-cell encapsulation into pico
116 create a quantitative and higher throughput workflow for producing palynological identifications and
117 y active for up to 72 h, and a semiautomated workflow for quantitative analysis of real-time in-cell
118 re, we present scHLAcount, a post-processing workflow for single-cell RNA-seq data that computes alle
120 Here, we present a scalable, HTS-compatible workflow for the automated generation, maintenance, and
121 Indeed, our main contribution is a novel workflow for the automatic construction of such similari
122 tical sensitivity, clinical performance, and workflow for the detection of SARS-CoV-2 in nasopharynge
126 mitation, here we report an improved SPS/ETD workflow for TMT-based intact glycopeptide quantificatio
128 a "gold standard" approach and experimental workflow for validating gene transfer to adipose tissue.
129 s toolbox can be used to build data-analysis workflows for metabolomics and other omics technologies.
130 l enable the broader use of gHDX in MS-based workflows for molecular identification and isomer differ
132 However, there is a need for more integrated workflows for processing and managing the resultant high
138 We have adapted ribosome profiling (RP) workflows from the Illumina to the Ion Proton platform a
140 nto existing healthcare systems and clinical workflows, harm resulting from potential false positives
144 obility separation to LESA mass spectrometry workflows has shown significant improvements in the sign
147 y-fluorescence-mass spectrometry (LC-FLR-MS) workflows have been limited with only a small amount of
148 was accomplished in 90 min with a walk-away workflow identical to real-time quantitative PCR (qPCR).
150 d by profound challenges supporting clinical workflow, impeding frontline clinicians' ability to deli
151 141 plasma samples using a 96-well automated workflow in a pilot non-small cell lung cancer classific
159 tworks were linked to HF risk in a multistep workflow, including machine learning-based identificatio
161 design, scripts of the quantitative analysis workflow, intermediate input and output files, as well a
168 As RCM is being adopted more widely, the workflow is expanding from real-time diagnosis at the be
169 tube-based high-throughput sample processing workflow is imperative to ensure sensitive, quantitative
170 in-modifying enzymes, demonstrating that our workflow is not restricted to reconstituted materials.
175 the development of specialized computational workflows is enabling systematic identification of BGCs
176 that are formally described using the Common Workflow Language, enabling greater provenance, reusabil
178 r post-enrichment and simplifies single-cell workflows, making it useful for other applications in si
180 considerable computing resources and several workflow management systems (WMS), e.g. Snakemake, Nextf
182 the recommended strategy in a computational workflow named NeoFlow to support proteogenomics-based n
183 wo common proteomics relative quantification workflows, namely label-free and tandem mass tag-based e
186 However, the effective implementation and workflow of RDTs are still a matter of debate, particula
190 ome of these challenges, microbiome analysis workflows often normalize the read counts prior to downs
198 atory features historically required complex workflows, preventing widespread adoption by the broad s
199 development was performed utilizing an Agile workflow process optimization with the Scrum framework.
200 ed orbital prosthesis using this fabrication workflow produced good symmetry, color match, and prosth
201 red with standard gating, the results of our workflow provide new insights in cellular subsets, alter
203 ormaticians are able to deploy data analysis workflows (recipes) that their collaborators can execute
207 ever, the conventional bottom-up MS analysis workflows require an enzymatic digestion step which can
208 ndard approaches, this article helps advance workflow research that ultimately serves to inform how t
211 y and support of reproducibility; in turn, a workflow's reproducibility can be greatly affected by th
212 ssible super-resolution imaging and analysis workflow-SEQUIN-that quantifies central synapses in huma
213 into existing single-beam and multibeam SEM workflows should be straightforward, increasing reliabil
214 ive data-independent acquisition (HRMS1-DIA) workflow shows that coordinated proteotype data acquisit
215 th diagnostic tests, including multiplexing, workflow simplicity, and reduced turnaround time and cos
216 junction with our ready-to-use computational workflows, STRIPE-seq is a straightforward, efficient me
218 ons of the utility of IMS in high-throughput workflows such as liquid chromatography-fluorescence-mas
219 on of breast cancer without prolonging their workflow.Supplemental material is available for this art
220 st enough to enhance and accelerate clinical workflows.Supplemental material is available for this ar
222 different sample preparation and MS analysis workflows, targeted different PTEN peptides, and were pe
223 report an MS1 automatized suspect screening workflow that allows for a rapid preannotation of HRMS d
225 ll Morphometry 3D (BCM3D), an image analysis workflow that combines deep learning with mathematical i
226 This is followed by a functional annotation workflow that combines sequence comparisons and conserve
228 This review presents a clinical practice workflow that has been successful since (177)Lu DOTATATE
232 esponsibilities in order to support clinical workflow that more consistently delivers on the potentia
233 escribe an improved GC-MS-based metabolomics workflow that uses insoluble protein-derived glutamate f
234 upport improved nurses work environments and workflow that will enhance nursing care interventions.
235 n designed to provide separate, reproducible workflows that (i) can determine the overall quality of
236 post-processing algorithms and developed ML workflows that allow for unbiased class probability (CP)
237 mprehensive R package for geneset enrichment workflows that offers multiple enrichment, visualization
239 mer additive in otherwise traditional curing workflows, the resulting materials can display the same
240 ntals regarding algorithms and best-practice workflows, the review covers different applications of m
244 Our systematic and high-throughput genetic workflow to characterize phage-host interaction determin
247 ped a sample drying, extraction, and loading workflow to enable reproducible and reliable sample inje
248 ional biosensors, provide a characterisation workflow to facilitate forward engineering efforts, exem
250 ve Isoform analysis of RNA), a computational workflow to identify high-confidence transcripts, perfor
251 epts of such analyses and provide a detailed workflow to illustrate their implications and additional
253 In conclusion, our data help to establish a workflow to obtain high-quality control data for diagnos
254 a generic method with a dedicated processing workflow to obtain these two sets of information simulta
255 ly, we organize the resource into a coherent workflow to prioritize key elements and variants, in add
259 ce/external scripts and tools, tailoring the workflow to the needs of the individual researcher withi
264 of the technologies utilized to couple these workflows to mass spectrometers have significant limitat
265 nteractoMIX includes a range of ready-to-use workflows to run complex analyses requiring minimal inte
268 identifier (UMI)-linked consensus sequencing workflow (UMIC-seq) that simplifies mapping of evolution
272 by PCA and PLS-DA was also achieved by this workflow using XCMS, even for the concentration of 5 mug
273 Here we present an automated benchmarking workflow, using synthetic shotgun sequencing reads for w
288 erforms state-of-the-art scRNA-Seq detection workflows when applied to well-established benchmarks.
289 ced crosslinking mass spectrometry (fliX-MS) workflow, which allows the mapping of protein-DNA contac
291 Taken together, we present a well-documented workflow, which utilizes existing high-dimensional singl
292 of our optimizations, we report an optimized workflow with an extraction time of 10 min, 150 mug of m
293 e Prereg Challenge format was a "structured" workflow with detailed instructions and an independent r
294 high-level overview of the radiation therapy workflow with discussion of the implications that AI is
299 d by a CI team with the goal to optimize the workflow within our EHR, improve operative room metrics