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1 assessed how the bacteria adapted to utilize xylose.
2 es cerevisiae cultures that are catabolizing xylose.
3 ulose, l-rhamnose, 3-O-methyl-d-glucose, and xylose.
4 ructure that links a phosphotrisaccharide to xylose.
5 hanol with a yield of about 0.46 g ethanol/g xylose.
6 9), and Arg(226), and the hydroxyl groups of xylose.
7 ss directly, but it cannot naturally grow on xylose.
8 e surface glycan structures that are rich in xylose.
9 AT1, towards both alpha- and beta-anomers of xylose.
10 riched in transporters that confer growth on xylose.
11 y affected transport of both D-glucose and D-xylose.
12 ially glycated by incubation with glucose or xylose.
13 catabolism of the released l-arabinose and d-xylose.
14 DH were not affected at all by 5mM (75mg/dL) xylose.
15 onic acid (UDP-GalA), UDP-arabinose, and UDP-xylose.
16 cellulosic biomass materials are glucose and xylose.
17 ne for cleavage to xylo-oligosaccharides and xylose.
18 , rhamnose, glucose, fructose, galactose and xylose.
19 odimers has been achieved from inexpensive d-xylose.
24 nolicus produced high current densities from xylose (5.8 +/- 2.4 A m(-2)), glucose (4.3 +/- 1.9 A m(-
25 opment of biocatalysts capable of fermenting xylose, a five-carbon sugar abundant in lignocellulosic
26 exhibited a long lag time when metabolizing xylose above 10 g/l as a sole carbon source, defined her
27 plexes of GlyA1 with glucose, galactose, and xylose allowed picturing the catalytic pocket and illust
28 ynthetic acceptor containing an alpha-linked xylose alone, but requires the presence of the underlyin
29 at Gal2-N376F had the highest affinity for D-xylose, along with a moderate transport velocity, and ha
30 ity to classical CCD epitopes (core beta-1,2-xylose, alpha-1,3-fucose) was positively associated with
32 ion of the polysaccharide repeating unit [-3-xylose-alpha1,3-glucuronic acid-beta1-]n by like-acetylg
33 ci or the mutant strain with reduced surface xylose; although iBALT formation is slowed in the latter
36 MYB46 resulted in a significant increase in xylose and a small increase in lignin content based on a
43 -derived carbohydrates (such as D-glucose, D-xylose and D-galactose) are extracted on commercial scal
50 been hampered by inefficient fermentation of xylose and the toxicity of acetic acid, which constitute
55 f 40 to 50 kDa and is composed of galactose, xylose, and five distinct partially O-methylated galacto
56 a strain is comprised of glucose, galactose, xylose, and four partially O-methylated galactose residu
57 f the transported sugars, including glucose, xylose, and glucosamine, and this substrate-induced expr
58 f the wheat bran was dominated by arabinose, xylose, and glucose, whereas mannose and galactose were
60 drates, such as d-glucose, d-fructose, and d-xylose, and their typical degradation products, such as
61 ructures (in complex with a substrate mimic, xylose, and xylobiose), the residues that tune the uniqu
62 set of variables that captured core beta-1,2-xylose- and alpha-1,3-fucose-specific responses, and con
63 d mediated reduction of ribose-, arabinose-, xylose-, and lyxose-derived methyl and phenyl ketofurano
67 se, galactose, and mannose), three pentoses (xylose, arabinose, and ribose), two deoxyhexoses (fucose
68 abolism genes, many of which are involved in xylose, arabinose, cellobiose, and hemicellulose metabol
69 isiae strain to show significant growth with xylose as the sole carbon source, as well as partial co-
72 A2 from Col-0 is highly selective toward UDP-xylose as the sugar donor, and the isoform from C24 can
73 abled complete and efficient fermentation of xylose as well as a mixture of glucose and xylose by the
74 omprising the optimization of a heterologous xylose-assimilating pathway and evolutionary engineering
75 XYL1, XYL2, and XYL3 genes constituting the xylose-assimilating pathway increased ethanol yields and
76 ficiency (CE) varied by electron donor, with xylose at 34.8% +/- 0.7%, glucose at 65.3% +/- 1.0%, and
79 cular, hydrogen bonding between Asn(462) and xylose at the nonreducing end subsite +2 was important f
81 oburin E, dimers roburins A and D and lyxose/xylose-bearing dimers roburins B and C are the principal
82 e monomers vescalagin and castalagin, lyxose/xylose-bearing monomers grandinin and roburin E, dimers
83 biologically relevant pyranose sugars: beta-xylose, beta-mannose, alpha-glucose, beta-glucose, and b
86 that only the combination of protonation and xylose binding, and not glucose, sets up the transporter
88 rom C24 can utilize both UDP-glucose and UDP-xylose but with a higher affinity to the glucose donor.
90 ity to their DNA binding sites, leading to a xylose catabolic activation independent of catabolite re
91 mutation in a transcriptional activator for xylose catabolic operons, either CRP or XylR, and these
92 in which glycogen synthesis is blocked, and xylose catabolism enabled through the introduction of xy
94 r versions should prove valuable for glucose-xylose cofermentation in lignocellulosic hydrolysates by
97 how any positive bias at a therapeutic level xylose concentration on the signal for a glucose sample.
98 hydrate-binding modules (CBMs) that binds to xylose-configured oligosaccharide/polysaccharide ligands
99 of the genes required for l-arabinose and d-xylose consumption is regulated by the sugar-responsive
101 ing pathway increased ethanol yields and the xylose consumption rates from a mixture of glucose and x
102 ene as a genomic change contributing to high xylose consumption, a trait important for lignocellulosi
106 d-(+)-raffinose, sucrose, d-trehalose, d-(+)-xylose, d-fructose, 1-thio-beta-d-glucose sodium salt, d
107 Other minor monosaccharides found were d-xylose, d-galactose, d-mannose, d-glucose, d-arabinose,
108 more active against substrates in which the xylose decorated with GlcA/MeGlcA is flanked by one or m
111 metabolite that is elevated during growth on xylose, demonstrating its relevance for pentose assimila
112 n of cysteine in the presence of fructose or xylose did not appreciably increase their production.
113 ies confirmed that a glucuronic acid beta1,4-xylose disaccharide synthesized by B4GAT1 acts as an acc
118 and motility associated genes responding to xylose feeding, as well as widely varying gene expressio
119 redox balancing strategy to enable efficient xylose fermentation and simultaneous in situ detoxificat
122 ill enable future efforts aimed at improving xylose fermentation to prioritize functional regulators
126 ch exhibited a shorter lag time and improved xylose-fermenting capabilities than the parental strain.
128 mmercial and laboratory strains (including a xylose-fermenting strain) under industrial-like conditio
129 is involved in the cleavage of the beta-1,2-xylose, followed by the alpha-mannosidase NixJ (GH125),
130 yme that converts UDP-glucuronic acid to UDP-xylose for capsule biosynthesis, but not known to play a
132 o be involved in the utilization of glucose, xylose, fucose, and arabinose, which are also substrates
134 f mutant alleles, a tight proportionality of xylose, galacturonic acid, and rhamnose was evidenced, e
136 to produce current from four electron donors-xylose, glucose, cellobiose, and acetate-with a fixed an
137 t part, the saccharide hydration properties (xylose, glucose, sucrose) in pure water are determined.
138 the mixture contained a negligible amount of xylose, having xylobiose, xylotriose and xylotetraose as
139 lting in strains with a 2.7-fold increase in xylose import rates, a 4-fold improvement in xylose inte
144 witch to the metabolism of l-arabinose and d-xylose in the absence of its preferred carbon source, gl
145 ed that the Araf decoration linked O3 to the xylose in the active site is located in the pocket (-2*
147 f uuat1 mutants had less GalA, rhamnose, and xylose in the soluble mucilage, and the distal cell wall
148 pectively, were produced from cellobiose and xylose in unsterilized seawater and algal-contaminated w
149 zyme activity after prolonged incubation was xylose indicating the presence of xylanase; however, a s
153 xylose import rates, a 4-fold improvement in xylose integration into central carbon metabolism, or a
155 in this process, the molecular transport of xylose into the cell, can serve as a significant flux bo
158 fficiently use glucose, their ability to use xylose is often repressed in the presence of glucose.
160 different sugars, including L-glucose and D-xylose, is described in this issue (Meinert et al., ), p
163 rried shared mutations: amplification of the xylose isomerase gene and inactivation of ISU1, a gene e
164 c library to identify multiple copies of the xylose isomerase gene as a genomic change contributing t
166 ty 20 member-B), which is a newly identified xylose kinase essential for glycosaminoglycan (GAG) form
167 neuraminic acid), 'all-or-none' responses (d-xylose, l-rhamnose) and complex combinations thereof (l-
168 total monosaccharide (glucose, arabinose and xylose) levels in the glycosides were determined after a
171 se, galactose, arabinose, glucose, rhamnose, xylose, mannose, fructose and ribose) plus inositol as i
172 tose, arabinose, glucose, sucrose, rhamnose, xylose, mannose, fructose, and ribose were quantified in
174 ore, the competitive pathway responsible for xylose metabolism in E. coli was blocked by disrupting t
175 antially as compared to the parental strain, xylose metabolism was interrupted by accumulated acetate
176 inducible genes for L. lactis growth in ATL, xylose metabolism was targeted for gene knockout mutagen
179 i D-lactate producer TG114, 94% of a glucose-xylose mixture (50 gL(-1) each) was used in mineral salt
180 production yield of 0.35 g/g from a glucose/xylose mixture, which is significantly higher than repor
181 tage glycosidation reaction to introduce the xylose moiety and a lithiation-borylation reaction to at
182 conformational changes, whereas its extended xylose moiety forms hydrophobic interactions with a Tyr
184 cture, the nucleophile O4 oxygen atom of the xylose molecule is found in close proximity to the C1 an
187 ignocellulosic biomass hydrolysates, such as xylose, must be improved before yeast can serve as an ef
189 1 or SSK2 improved the ability to metabolize xylose of yeast cells without adaptive evolution, sugges
192 ntly solved crystallographic models of the D-xylose permease XylE from Escherichia coli and GlcP from
193 tion is impaired by loss of Fam20B-dependent xylose phosphorylation and reveal a previously unappreci
195 the wall is glucuronoxylan, a beta1,4-linked xylose polysaccharide that is decorated with alpha-linke
196 support the importance of the cytosolic UDP-xylose pool and UDP-xylose transporters in cell wall bio
197 train of C. neoformans that cannot transport xylose precursors into the secretory compartment is seve
198 indings suggest that the binding affinity of xylose ramifications on RG-I to a cellulose scaffold is
204 oxylanase activities and higher arabinose-to-xylose ratios of WU-AX than those of corresponding whole
206 accharomyces cerevisiae revealed that fungal xylose reductases act as xylodextrin reductases, produci
208 emonstrated that XynA is a rare reducing end xylose-releasing exo-oligoxylanase and not an endo-beta-
209 , in zebrafish embryos, the peptide-proximal xylose residue can be metabolically replaced with a chai
210 ber B (Fam20B) phosphorylates the initiating xylose residue in the proteoglycan tetrasaccharide linka
213 he xylan backbone polymer, a linear chain of xylose residues connected by beta-1,4 glycosidic linkage
215 s-alpha-xylosidase activity also transferred xylose residues from xyloglucan oligosaccharides to long
216 tructure and that the hydroxyl groups of all xylose residues in the active site are solvent exposed,
217 stituted oligosaccharides (AXOS) having 2-10 xylose residues in the main chain but no unsubstituted x
218 sts of a linear backbone of beta(1,4)-linked xylose residues substituted with alpha(1,2)-linked glucu
219 an, a beta1,4-glucan decorated with alpha1,6-xylose residues, by targeting structures common to the t
221 (where Man and Xyl represent d-mannose and d-xylose, respectively), underlying the molecular basis of
223 sults reveal that xylan is the most abundant xylose-rich component in Arabidopsis seed mucilage and i
224 Asn(139), which interact with arabinose and xylose side chains at the -2* subsite, abrogates catalyt
225 also make hydrophobic interactions with the xylose side chains of xyloglucan, conferring the distinc
228 g xylitol, a five-carbon polyol derived from xylose, the most abundant pentose in lignocellulosic bio
230 rmocellum (KJC335) was engineered to utilize xylose through expressing a heterologous xylose cataboli
233 DP-N-acetylglucosamine, UDP-glucose, and UDP-xylose to conjugate xenobiotics, including drugs and end
234 ilization, strains could efficiently convert xylose to ethanol with a yield of about 0.46 g ethanol/g
236 ward pentoses such as arabinose, ribose, and xylose to the exclusion of the expected fructose, which
239 ove the transcriptional state of cells using xylose toward that of cells producing large amounts of e
244 deduced from the crystal structure of the D-xylose transporter XylE from Escherichia coli, both resi
248 developed approach, we identified three UDP-xylose transporters in the Arabidopsis thaliana NST fami
250 t growth-based screening system for mutant D-xylose transporters that are insensitive to the presence
252 simultaneous fermentation of D-glucose and D-xylose, two primary sugars present in lignocellulosic bi
259 strongly increased glucose (up to +81%) and xylose (up to +153%) release, suggesting that down-regul
261 two amino acid substitutions in XylR enhance xylose utilization and release glucose-induced repressio
263 rain, containing an established heterologous xylose utilization pathway, and imposed a laboratory evo
264 te consumption pathway and an NADH-producing xylose utilization pathway, engineered yeast converts ce
266 daptive evolution with selection for optimal xylose utilization, strains could efficiently convert xy
268 ompared KJC335's transcriptomic responses to xylose versus cellobiose as the primary carbon source an
271 The negligible activity of AnGDH towards xylose was also explained on the basis of a 3D structura
272 ing a novel polyphosphate xylulokinase (XK), xylose was converted into H2 and CO2 with approaching 10
274 , and once glucose was completely exhausted, xylose was used by the microorganisms, mainly related to
276 the repeats but that extension of glucose by xylose weakens stability, explained by the binding of th
279 l participants, IgE and IgG to core beta-1,2-xylose were positively associated with Sm infection and
282 se and hexose sugars, especially glucose and xylose, which are the most abundant sugars in cellulosic
283 li strain was constructed to produce BT from xylose, which is a major component of the lignocellulosi
285 ellent overall yield of more than 10% from d-xylose, while the heterodimer route led to UT-39 in 19 s
286 ion only occurs in the presence of substrate xylose, while the inhibitor glucose locks the transporte
287 -3-enopyranosid-2-ulose) was prepared from D-xylose, while the R analogue was obtained from L-arabino
290 by product removal and separate oxidation of xylose with the aldose sugar dehydrogenase, is more prod
291 ylosyltransferase that attaches the distal d-xylose (Xyl) unit to the l-fucose (Fuc) that is part of
293 the simultaneous determination of arabinose, xylose, xylo-oligosaccharides (XOS), and AXOS by applyin
297 ell wall, consists of a backbone of beta-1,4-xylose (Xylp) units that are often decorated with arabin
298 henol abundance, and four for glucose and/or xylose yield, not a single QTL for aromatic abundance an
300 idazolium acetate, 90-95% glucose and 70-75% xylose yields were obtained for these samples after 72-h